Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013187.1 Kokia drynarioides strain JFW-HI SEQ_128206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4335
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Found at i:3844 original size:139 final size:139
Alignment explanation
Indices: 3589--4012 Score: 686
Period size: 139 Copynumber: 3.1 Consensus size: 139
3579 ATCCAAAAAA
* *
3589 CAGATTAGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTAA
1 CAGATTCGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTGA
* *
3654 TGAGACACTGAGAAGAAAACCCAAACAAGGCTCGAAACGAGCAAATATTCCTGATGAGATACGGA
66 TGAGACACTGAGAAGAAAACCCAAACGAGGCTCGAAACGAGCAAATCTTCCTGATGAGATACGGA
*
3719 GAAGTGAGC
131 GAAGTGAAC
*
3728 TAGATTCGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTGA
1 CAGATTCGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTGA
* *
3793 TAAGACACTGAGAAGAAAACCCAAACGAGGCTCGAAACGAGCAAATCTTCCTGATGAGATACGAA
66 TGAGACACTGAGAAGAAAACCCAAACGAGGCTCGAAACGAGCAAATCTTCCTGATGAGATACGGA
3858 GAAGTGAAC
131 GAAGTGAAC
* ** *
3867 CAGATTCGTATTCCTGATGAGATACAGAGAAACGGGTCGAAACAGCGATAGGATCATCTTCCTGA
1 CAGATTCGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTGA
* * * **
3932 TGAGATACTGAGAAGAAAACCCAAACGAGGCTCGAAGCGAGCAAATCTTCCCGATGAGATATTGA
66 TGAGACACTGAGAAGAAAACCCAAACGAGGCTCGAAACGAGCAAATCTTCCTGATGAGATACGGA
3997 GAAGTGAAC
131 GAAGTGAAC
*
4006 CAAATTC
1 CAGATTC
4013 ATAAGCAAAT
Statistics
Matches: 264, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
139 264 1.00
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (139 bp):
CAGATTCGTATTCCTGATGAGATACAGAGAAACGGATCGAAACAATGATGGGATCATCTTCCTGA
TGAGACACTGAGAAGAAAACCCAAACGAGGCTCGAAACGAGCAAATCTTCCTGATGAGATACGGA
GAAGTGAAC
Done.