genome.fa.s13189.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013189.1 Kokia drynarioides strain JFW-HI SEQ_128208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51242

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3885--3953	9	7.4	9	71	18	52	0	13	4	82	0.81
3885--3935	12	4.5	11	80	7	57	0	13	3	82	0.81
3890--3944	22	2.6	21	81	13	67	0	14	3	81	0.82
3899--3957	31	2.0	29	90	6	91	0	11	6	81	0.87
5168--5327	75	2.2	74	86	5	218	25	16	19	38	1.92
8974--9008	17	2.1	17	100	0	70	65	0	28	5	1.15
13869--14147	30	9.4	30	79	9	227	39	3	19	37	1.68
13878--14176	29	10.1	30	77	8	220	37	3	20	38	1.69
13905--14147	59	4.1	58	79	10	246	38	3	19	38	1.68
13869--14088	88	2.5	88	84	4	273	40	2	19	37	1.66
13869--14207	59	5.7	60	77	7	185	37	3	20	38	1.69
14546--14601	27	2.0	28	83	10	71	33	25	0	41	1.56
15958--16050	48	1.9	48	88	0	141	20	21	18	39	1.92
15902--16179	123	2.3	123	86	3	382	21	19	18	40	1.91
28051--28122	27	2.6	29	75	18	71	63	11	11	13	1.51
28200--28429	29	7.8	29	78	9	209	38	3	20	36	1.71
28200--28432	59	3.9	59	80	8	251	39	3	20	36	1.71
30900--30925	13	2.0	13	100	0	52	61	15	7	15	1.55
31129--31182	23	2.3	24	81	9	67	31	9	14	44	1.77
32499--32706	74	2.8	74	98	0	398	35	17	11	35	1.86
38161--38221	30	2.0	31	96	3	115	52	0	0	47	1.00
40512--40696	29	6.4	29	74	7	119	37	23	3	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536--40787	58	4.3	57	75	8	177	35	24	3	36	1.72
40472--40696	87	2.6	86	83	3	270	37	23	3	35	1.72
40590--40957	28	12.8	28	73	10	183	37	25	3	33	1.72
40608--40896	146	2.0	147	82	10	351	36	26	3	33	1.73
40789--41101	114	2.7	113	80	4	288	36	25	5	32	1.80
46442--46482	15	2.9	14	82	7	55	75	0	24	0	0.80
47402--47698	49	6.0	49	75	9	246	35	18	30	15	1.92
47399--47697	150	2.0	148	83	6	381	35	18	30	15	1.92
47867--47951	41	2.0	42	82	6	102	28	18	22	30	1.97
47980--48078	38	2.5	39	78	3	110	24	32	18	25	1.97
48099--48974	207	4.2	210	85	4	1109	37	18	21	22	1.94
48778--49145	171	2.1	172	84	4	476	38	18	21	21	1.94
48957--49588	208	3.0	206	85	3	838	37	18	21	21	1.94
49413--49771	183	2.0	181	92	2	603	36	18	20	24	1.95
49597--49911	160	2.0	160	83	3	402	38	19	20	21	1.94

Tables:   1

The End!