Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013197.1 Kokia drynarioides strain JFW-HI SEQ_128216, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14065
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:1643 original size:21 final size:21

Alignment explanation


    Indices: 1617--1667  Score: 93
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1607 TGCTTTCTAC

                                 
       1617 GTGGCGACACGGCTCCTATGT
          1 GTGGCGACACGGCTCCTATGT

                                 
       1638 GTGGCGACACGGCTCCTATGT
          1 GTGGCGACACGGCTCCTATGT

              *      
       1659 GTCGCGACA
          1 GTGGCGACA

       1668 ACAACTCTTG


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22


Consensus pattern (21 bp):   
GTGGCGACACGGCTCCTATGT
Done.