Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013198.1 Kokia drynarioides strain JFW-HI SEQ_128217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25412
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Warning! 119 characters in sequence are not A, C, G, or T
Found at i:18 original size:3 final size:3
Alignment explanation
Indices: 5--124 Score: 62
Period size: 3 Copynumber: 38.0 Consensus size: 3
1 ACAT
* * *
5 TAA TAG TAA TAA TAGT TAA TAA TAA TAA TAA CTATT TAA TAAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA -TA-A TAA T-AA TAA TAA
* * * * * * *
54 TAA TAT TAA TAA TAAA TAG TAG TAA TAAA TAC CAT TAA TAAA TAT TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA T-AA TAA TAA TAA T-AA TAA TAA
* *
102 TAA AAA TAT TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
125 AAAGGGAAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
2 2 0.02
3 68 0.77
4 18 0.20
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:25 original size:16 final size:16
Alignment explanation
Indices: 4--34 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1 ACA
*
4 TTAATAGTAATAATAG
1 TTAATAATAATAATAG
20 TTAATAATAATAATA
1 TTAATAATAATAATA
35 ACTATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
TTAATAATAATAATAG
Found at i:29 original size:13 final size:12
Alignment explanation
Indices: 11--119 Score: 74
Period size: 13 Copynumber: 8.5 Consensus size: 12
1 ACATTAATAG
11 TAATAATAGTTAA
1 TAATAATA-TTAA
*
24 TAATAATAATAA
1 TAATAATATTAA
* *
36 CTATTTAATAAATAA
1 -TA-ATAAT-ATTAA
51 TAATAATATTAA
1 TAATAATATTAA
* *
63 TAATAAATAGTAG
1 TAAT-AATATTAA
** *
76 TAATAAATACCAT
1 TAAT-AATATTAA
89 TAATAAATATTAA
1 TAAT-AATATTAA
*
102 TAAAAATATTAA
1 TAATAATATTAA
114 TAATAA
1 TAATAA
120 AATAAAAAGG
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
12 24 0.31
13 43 0.55
14 6 0.08
15 5 0.06
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:1344 original size:59 final size:59
Alignment explanation
Indices: 1252--1741 Score: 563
Period size: 59 Copynumber: 8.3 Consensus size: 59
1242 TAAATTGCCC
* * * * *
1252 AAAATTCCTTTTTTACCCTCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACATCTA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* *
1311 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCTCGAAACTTCTA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* * * ** * **
1370 AAAATTCTATTTTTACCCTCGAACTTCCAAAAATTTCATTTTTGACCTCGAAACTTTTA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* * ** *
1429 AAAATTCCATTTTTACCCTCGAACTTCCAAAAATCTAATTTTTGACCTC-AAACTTCCA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* *
1487 AAAATTCCATTTTTACCCCCGAACTTCCAAAAATCCTATTTTTGACCCCGAAACTTCCA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* * **
1546 AAAATTCCATTTTTA-CTCTAGAACTTCCAAAAATCCCATTTTTGACCCAAAAACTTCCA
1 AAAATTCCATTTTTACCCCCA-AACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* **** * *
1605 AAAATTCCATTTTTACCCTCAAACTTTTGTAAATCCCATTTTTTACCCCGAAACTCCCA
1 AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
* * ** ** *
1664 AAAATTCCATTTTTTATCCCTAAACTTTAAAAAAATCCCATTTTT-ACCCTTAAACCTCCA
1 AAAATTCCA-TTTTTACCCCCAAAC-TTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
*
1724 AAAATGCCATTTTTACCC
1 AAAATTCCATTTTTACCC
1742 TTAAATGTCT
Statistics
Matches: 376, Mismatches: 50, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
58 54 0.14
59 274 0.73
60 33 0.09
61 15 0.04
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (59 bp):
AAAATTCCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCA
Found at i:1746 original size:29 final size:29
Alignment explanation
Indices: 1252--1742 Score: 462
Period size: 29 Copynumber: 16.7 Consensus size: 29
1242 TAAATTGCCC
*
1252 AAAATTCCTTTTTTACCCTCAAACTTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
* * *
1281 AAAATCCCATTTTTGACCC-CAAAACATCTA
1 AAAATTCCATTTTT-ACCCTC-AAACTTCCA
*
1311 AAAATTCCATTTTTACCCCCAAACTTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
* *
1340 AAAATCCCATTTTTGA-CCTCGAAACTTCTA
1 AAAATTCCATTTTT-ACCCTC-AAACTTCCA
* *
1370 AAAATTCTATTTTTACCCTCGAACTTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
* **
1399 AAAATTTCATTTTTGA-CCTCGAAACTTTTA
1 AAAATTCCATTTTT-ACCCTC-AAACTTCCA
*
1429 AAAATTCCATTTTTACCCTCGAACTTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
*
1458 AAAA-TCTAATTTTTGA-CCTCAAACTTCCA
1 AAAATTC-CATTTTT-ACCCTCAAACTTCCA
* *
1487 AAAATTCCATTTTTACCCCCGAACTTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
1516 AAAA-TCCTATTTTTGACCC-CGAAACTTCCA
1 AAAATTCC-ATTTTT-ACCCTC-AAACTTCCA
*
1546 AAAATTCCATTTTTACTCT-AGAACTTCCA
1 AAAATTCCATTTTTACCCTCA-AACTTCCA
* **
1575 AAAATCCCATTTTTGACCCAAAAACTTCCA
1 AAAATTCCATTTTT-ACCCTCAAACTTCCA
***
1605 AAAATTCCATTTTTACCCTCAAACTTTTG
1 AAAATTCCATTTTTACCCTCAAACTTCCA
* * *
1634 TAAATCCCATTTTTTACCC-CGAAACTCCCA
1 AAAATTCCA-TTTTTACCCTC-AAACTTCCA
**
1664 AAAATTCCATTTTTTATCCCT-AAACTTTAAA
1 AAAATTCCA-TTTTTA-CCCTCAAAC-TTCCA
* * *
1695 AAAATCCCATTTTTACCCTTAAACCTCCA
1 AAAATTCCATTTTTACCCTCAAACTTCCA
*
1724 AAAATGCCATTTTTACCCT
1 AAAATTCCATTTTTACCCT
1743 TAAATGTCTA
Statistics
Matches: 380, Mismatches: 55, Indels: 54
0.78 0.11 0.11
Matches are distributed among these distances:
28 7 0.02
29 191 0.50
30 165 0.43
31 17 0.04
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAATTCCATTTTTACCCTCAAACTTCCA
Found at i:1850 original size:27 final size:29
Alignment explanation
Indices: 1812--1871 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 29
1802 AAATTTTCCT
*
1812 AAAATCACCATTTTG-TCCTGAGAATCC-
1 AAAATCACCATTTTGCCCCTGAGAATCCG
* *
1839 AAAATTACCATTTTGCCCCTGAGCATCCG
1 AAAATCACCATTTTGCCCCTGAGAATCCG
1868 AAAA
1 AAAA
1872 GTCTTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 14 0.50
28 10 0.36
29 4 0.14
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (29 bp):
AAAATCACCATTTTGCCCCTGAGAATCCG
Found at i:14245 original size:17 final size:17
Alignment explanation
Indices: 14220--14301 Score: 101
Period size: 17 Copynumber: 4.8 Consensus size: 17
14210 ATGGGCTCGA
*
14220 TAAACTTAAATTTATTT
1 TAAATTTAAATTTATTT
* * *
14237 TAAAATTAAGTTTATTC
1 TAAATTTAAATTTATTT
*
14254 TAAATTTAAATTTAGTT
1 TAAATTTAAATTTATTT
* *
14271 GAAATTTAAATTTATTA
1 TAAATTTAAATTTATTT
14288 TAAATTTAAATTTA
1 TAAATTTAAATTTA
14302 AAATTTATTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 54 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (17 bp):
TAAATTTAAATTTATTT
Found at i:14263 original size:6 final size:6
Alignment explanation
Indices: 14220--14308 Score: 55
Period size: 6 Copynumber: 15.3 Consensus size: 6
14210 ATGGGCTCGA
* * * *
14220 TAAACT TAAATT T-ATTT TAAAAT TAAGTT T--ATT CTAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT -TAAATT TAAATT
* *
14266 T-AGTT GAAATT TAAATT T--ATT ATAAATT TAAATT TAAAATT TA
1 TAAATT TAAATT TAAATT TAAATT -TAAATT TAAATT T-AAATT TA
14309 TTTTAAATGT
Statistics
Matches: 63, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
4 5 0.08
5 9 0.14
6 37 0.59
7 12 0.19
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (6 bp):
TAAATT
Found at i:14285 original size:34 final size:34
Alignment explanation
Indices: 14219--14301 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
14209 TATGGGCTCG
* * * *
14219 ATAAACTTAAATTTATTTTAAAATTAAGTTTATT
1 ATAAATTTAAATTTAGTTGAAAATTAAATTTATT
* *
14253 CTAAATTTAAATTTAGTTGAAATTTAAATTTATT
1 ATAAATTTAAATTTAGTTGAAAATTAAATTTATT
14287 ATAAATTTAAATTTA
1 ATAAATTTAAATTTA
14302 AAATTTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (34 bp):
ATAAATTTAAATTTAGTTGAAAATTAAATTTATT
Found at i:14310 original size:24 final size:23
Alignment explanation
Indices: 14272--14316 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
14262 AATTTAGTTG
14272 AAATTTAAATTTATTATAAATTT
1 AAATTTAAATTTATTATAAATTT
*
14295 AAATTTAAAATTTATTTTAAAT
1 AAATTT-AAATTTATTATAAAT
14317 GTCCAAGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AAATTTAAATTTATTATAAATTT
Found at i:14962 original size:96 final size:96
Alignment explanation
Indices: 14779--14965 Score: 229
Period size: 96 Copynumber: 1.9 Consensus size: 96
14769 GAGAAAAGGA
* ** *
14779 TATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCAGAATC
1 TATTCGACTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCAGAATC
* *
14844 GAAGATAATGAAGCATTGCCTCGATTATCGG
66 GAAGATAAAGAAGCATTACCTCGATTATCGG
* *
14875 TATTCGACTATTTCGATTTGAGGAAAAATTGCACCTAGTAAGTTAAGGCACAA-ATTTTC-GAAA
1 TATTCGACTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTCAG-AA
*
14938 CTCGAA-ATAGAAGAA-TATTACCTCGATT
64 -TCGAAGATA-AAGAAGCATTACCTCGATT
14966 TTAAAGTTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
95 2 0.03
96 67 0.86
97 9 0.12
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (96 bp):
TATTCGACTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCAGAATC
GAAGATAAAGAAGCATTACCTCGATTATCGG
Found at i:15293 original size:29 final size:29
Alignment explanation
Indices: 15256--15693 Score: 386
Period size: 29 Copynumber: 15.0 Consensus size: 29
15246 GGAAAAATTT
* *
15256 GGGGTTAAAAATGGAATTTTTAGACA-TTC
1 GGGGGTAAAAATGGAATTTTTGGA-AGTTC
* *
15285 GGGGGTAAAAAT-GATATTTTTAGAAGTTT
1 GGGGGTAAAAATGGA-ATTTTTGGAAGTTC
*
15314 GAGGGTAAAAATGGAATTTTT-GAGAGTTTC
1 GGGGGTAAAAATGGAATTTTTGGA-AG-TTC
*
15344 GGGGTTAAAAAT-GAGATTTTTGGAAGTTC
1 GGGGGTAAAAATGGA-ATTTTTGGAAGTTC
* * *
15373 GAGGG-AAAAATGGAATTTTTGGGAGTTT
1 GGGGGTAAAAATGGAATTTTTGGAAGTTC
* *
15401 TGGGGTAAAAAATGGGATTTTTGGAAGTTC
1 GGGGGT-AAAAATGGAATTTTTGGAAGTTC
* * * *
15431 GAGTGTAAAAATGGAATTTTTGGGAGTTTT
1 GGGGGTAAAAATGGAATTTTTGGAAG-TTC
* * *
15461 GGGGTTAAAAATGGGATTTTTGGAAGTTT
1 GGGGGTAAAAATGGAATTTTTGGAAGTTC
* * * * *
15490 AGGGGTAAAAATAGAATTTTAGGAATTTT
1 GGGGGTAAAAATGGAATTTTTGGAAGTTC
** * *
15519 AAGGTTAAAAAT-GAGATTTTTGGAAGTTT
1 GGGGGTAAAAATGGA-ATTTTTGGAAGTTC
* *
15548 GGGGCTAAAAATGGAATTTTTGGGAGTTTC
1 GGGGGTAAAAATGGAATTTTTGGAAG-TTC
*
15578 GGGGTTAAAAATGGAATTTTTGGAAGTTC
1 GGGGGTAAAAATGGAATTTTTGGAAGTTC
* *
15607 GAGGGTAAAAATGGAATTTTTAGGAATTTC
1 GGGGGTAAAAATGGAATTTTT-GGAAGTTC
* * * *
15637 -GGGTTAAAAATTGTATTTTTAGAAGTTC
1 GGGGGTAAAAATGGAATTTTTGGAAGTTC
* *
15665 GGGGGTAAAAACGAAATTTTTGGACAGTT
1 GGGGGTAAAAATGGAATTTTTGGA-AGTT
15694 TAGGGACCTC
Statistics
Matches: 334, Mismatches: 58, Indels: 33
0.79 0.14 0.08
Matches are distributed among these distances:
28 34 0.10
29 191 0.57
30 107 0.32
31 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (29 bp):
GGGGGTAAAAATGGAATTTTTGGAAGTTC
Found at i:15467 original size:117 final size:116
Alignment explanation
Indices: 15261--15687 Score: 515
Period size: 117 Copynumber: 3.7 Consensus size: 116
15251 AATTTGGGGT
* * * * *
15261 TAAAAATGGAATTTTTA-GACATTCGGGGGTAAAAATGATATTTTTAGAAGTTTGAGGGTAAAAA
1 TAAAAATGGAATTTTTAGGA-TTTTGGGGTTAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAAA
*
15325 TGGAATTTTTGAGAGTTTCGGGGTTAAAAATGAGATTTTTGGAAGTTCGAGGG
65 TGGAATTTTTGGGAGTTTCGGGGTTAAAAATG-GATTTTTGGAAGTTCGAGGG
* * * * *
15378 -AAAAATGGAATTTTTGGGAGTTTTGGGGTAAAAAATGGGATTTTTGGAAGTTCGAGTGTAAAAA
1 TAAAAATGGAATTTTTAGGA-TTTTGGGGTTAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAAA
* *
15442 TGGAATTTTTGGGAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTT-TAGGGG
65 TGGAATTTTTGGGAGTTTCGGGGTTAAAAAT-GGATTTTTGGAAGTTCGA-GGG
* ** * *
15495 TAAAAATAGAA-TTTTAGGAATTTTAAGGTTAAAAATGAGATTTTTGGAAGTTTG-GGGCTAAAA
1 TAAAAATGGAATTTTTAGG-ATTTTGGGGTTAAAAATGAGATTTTTAGAAGTTCGAGGG-TAAAA
15558 ATGGAATTTTTGGGAGTTTCGGGGTTAAAAATGGAATTTTTGGAAGTTCGAGGG
64 ATGGAATTTTTGGGAGTTTCGGGGTTAAAAATGG-ATTTTTGGAAGTTCGAGGG
* * * *
15612 TAAAAATGGAATTTTTAGGAATTTCGGGTTAAAAATTG-TATTTTTAGAAGTTCGGGGGTAAAAA
1 TAAAAATGGAATTTTTAGGATTTTGGGGTTAAAAA-TGAGATTTTTAGAAGTTCGAGGGTAAAAA
* *
15676 CGAAATTTTTGG
65 TGGAATTTTTGG
15688 ACAGTTTAGG
Statistics
Matches: 266, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
116 20 0.08
117 222 0.83
118 24 0.09
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (116 bp):
TAAAAATGGAATTTTTAGGATTTTGGGGTTAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAAAT
GGAATTTTTGGGAGTTTCGGGGTTAAAAATGGATTTTTGGAAGTTCGAGGG
Found at i:16520 original size:3 final size:3
Alignment explanation
Indices: 16391--16506 Score: 151
Period size: 3 Copynumber: 37.0 Consensus size: 3
16381 TTTTTCGTGT
* * *
16391 TTA TTA TTTA TTA TTA TTA TTGAA ATA ATA GTTA TTA TTTA ATA TTA
1 TTA TTA -TTA TTA TTA TTA TT--A TTA TTA -TTA TTA -TTA TTA TTA
*
16438 TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16486 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
16507 ATGAATTTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 10
0.86 0.05 0.08
Matches are distributed among these distances:
3 92 0.90
4 8 0.08
5 2 0.02
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:17260 original size:17 final size:17
Alignment explanation
Indices: 17216--17268 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
17206 CTTTTTAATC
*
17216 AATTAAATTTTAAA-TT
1 AATTTAATTTTAAACTT
* *
17232 CAAATTAGTTTTAAACTT
1 -AATTTAATTTTAAACTT
17250 AATTTAATTTTAAACTT
1 AATTTAATTTTAAACTT
17267 AA
1 AA
17269 AAGAAAAGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 28 0.93
18 2 0.07
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (17 bp):
AATTTAATTTTAAACTT
Found at i:18073 original size:205 final size:203
Alignment explanation
Indices: 17731--18532 Score: 1052
Period size: 205 Copynumber: 3.9 Consensus size: 203
17721 TCTCTGGGTT
* * * * * * * *
17731 TCATCAGGAAGATGATTTTGGTTTATTTCCCCGTATTTCATCAGGAAGCTAACCGTTTTATTGTT
1 TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAA-CG-TTTATTGCT
* * *
17796 TCGA-CTCGCTTCTCGGTGCCTCATCCAGAAGCTGG-GATTCGAAGATTTGCCCACATCGAGCAT
64 TCGACCT-GCTTCTCGGTGTCTCAT-CAGAAGCTGGAG-TTCGAAGATTTGCTCACATCGAGCAC
* * * * *
17859 GGGTTTGATTTGGTCTTCTTCTCAGCATCTAATCAAGAAGTTGACCACGTCATTCGTTTCAATTT
126 GGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTT
*
17924 CCTTCTCTGTATC
191 GCTTCTCTGTATC
* *
17937 TCATCAGGAAGATGAATTTGGTTCGCTTCTCAGTATCTCATCAGGAAGCTCAACGTTTATTGCTT
1 TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCT-AACGTTTATTGCTT
** * *
18002 CGACCTGCTTCTCAATGTCTCATCAGGAAGCTGG-GATTCAAAGATTTGCTCACTTCGAGCACGG
65 CGACCTGCTTCTCGGTGTCTCATCA-GAAGCTGGAG-TTCGAAGATTTGCTCACATCGAGCACGG
* *
18066 GTTTGATTTGGACTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTTCAACTTGC
128 GTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTTGC
18131 TTCTCTGTATC
193 TTCTCTGTATC
* * * **
18142 TTATCAGGAAGACGAATTTGGTTCGCTTCTCAGTATCTCATCAGGAAACTCTCCGTTTATTGCTT
1 TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCT-AACGTTTATTGCTT
* *
18207 CGACCTGCTTCTCGGTGTCTCATCAAGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCGCTGG
65 CGACCTGCTTCTCGGTGTCTCATC-AGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCACGGG
* * *
18272 TTTTATTTGGTCTTCTTCTTAGTATCTCATCAGGAAGATAACCACGTCATTTGTTTCAATTTGCT
129 TTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTTGCT
18337 TCTCTGTATC
194 TCTCTGTATC
* * **
18347 TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTACCCATTTTATTATT
1 TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA-AC-GTTTATTGCT
* ** * * **
18412 TCGACCTGCTTCTCGGTATCTCATTTGAACCTGAAGTTCGAAGATTTGCTCACATCGAGCACGAA
64 TCGACCTGCTTCTCGGTGTCTCATCAGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCACGGG
*
18477 TTTGATTTGGTCTTCTTCTCAGTATCTTATCAGGAAGATGACCACGTCATTTGTTT
129 TTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTT
18533 TATGGATAAT
Statistics
Matches: 530, Mismatches: 59, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
204 2 0.00
205 447 0.84
206 79 0.15
207 2 0.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (203 bp):
TCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACGTTTATTGCTTC
GACCTGCTTCTCGGTGTCTCATCAGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCACGGGTT
TGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTTGCTTC
TCTGTATC
Done.