Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013200.1 Kokia drynarioides strain JFW-HI SEQ_128219, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6998
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Warning! 73 characters in sequence are not A, C, G, or T
Found at i:444 original size:216 final size:216
Alignment explanation
Indices: 4--460 Score: 576
Period size: 216 Copynumber: 2.1 Consensus size: 216
1 AAG
* *
4 AGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 AGTTTGACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTT
* * * * * *
69 TTAATTCGAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAACTGATGCGAATTCC
66 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGAATTCC
*
134 CAAGCATGGAATGTTCAAAAAATTGTACGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCGA
131 CAAGCATGGAATGTTCAAAAAATTGTACGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCAA
*
199 TGTTATAAAAGAACTAGTAAA
196 AGTTATAAAAGAACTAGTAAA
* *
220 AGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTT
1 AGTTTGACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTT
* * * ** *
285 TTATTTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCC
66 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGAATTCC
* ** * * * * * * * *
350 CGAGCATGGAATGTTC-GGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGATCCA
131 CAAGCATGGAATGTTCAAAAAATTGT-ACGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCA
* * *
414 AAGTTA-AAAATTAGCTCGTAAA
195 AAGTTATAAAA-GAACTAGTAAA
* *
436 ATTTTGACATGTTTGAAAGTTCGTC
1 AGTTTGACAAGTTTGAAAGTTCGTC
461 CAGAAAACNN
Statistics
Matches: 203, Mismatches: 36, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
215 10 0.05
216 193 0.95
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
AGTTTGACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTT
TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGCGAATTCC
CAAGCATGGAATGTTCAAAAAATTGTACGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCAA
AGTTATAAAAGAACTAGTAAA
Found at i:903 original size:216 final size:216
Alignment explanation
Indices: 567--5386 Score: 5465
Period size: 216 Copynumber: 22.3 Consensus size: 216
557 ATGGATCTTG
* * * * * * * * * *
567 TTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTAATAAAATTTTGACATGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
*
632 TCCAGAA-AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * *
696 GTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAA
129 GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAA
761 ATTGTTCGAAAGAATAGATCGTC
194 ATTGTTCGAAAGAATAGATCGTC
*
784 TTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTT-AGAAGTTC
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGA-AAGTTC
* * * * *
848 GTCAAAGAACAAAGAGAGAAATATTTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAATTTG
65 GTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
* * ** * * *
913 TTTACAAAATGACAAACTATTTAGGTCAAATGATTTGATTTCCCGAGCATGGTATGTTC-AAAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
* * * * * *
977 TTTTCTCTAAGGAATGGATCTTG
195 TTGT-TCGAAAGAATAGATCGTC
* * * * * * * * * *
1000 TTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTTGTAAAATTTTGACATGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* *
1065 TCCAGAA-AACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * *
1129 GTTTGCAAAATGATAAACAATTTTGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCCAAAA
129 GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAA
*
1194 ATTGTTCGGAAGAATAGATCGTC
194 ATTGTTCGAAAGAATAGATCGTC
* * *
1217 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * * *
1282 TCAAACAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTAT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * * **
1347 TTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATTTTC-GGAAAT
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
* * * * * *
1411 TTTCTCTAAGGAATTGATCTTG
196 TGT-TCGAAAGAATAGATCGTC
* * * * * * * *
1433 TTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * * *
1498 TCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTAAAAGACCAATACTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * * *
1563 TTGCAAAATGATAAACAATTTCGACCAACTGATGCGATTTCCCAAGCACGGAATGTTCAAAAAAA
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
*
1628 TGTTCGAAAGAATAGATCATC
196 TGTTCGAAAGAATAGATCGTC
* * * * *
1649 TTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAACTTTGACACGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * *
1714 TCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAAAATTTG
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAACTTG
* * * * ** *
1779 TTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGGAAAT
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
** ** * * * *
1844 TTKCTCTWAGGAATRGATCTTG
195 TTGTTCGAAAGAATAGATCGTC
* * * ** * * * * * * *
1866 TTGAATACTTTASGGADCCAAARTTAAAAAATARCTCGTAARAKTTTGACAWGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * * * * * * * * *
1931 TCCARARARCAAARAGAGAAACAATTCTCACRTAAATAARTTTTTAATWCRAMGACCAAWACTTG
66 T-CAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
* * * ** *
1996 TTTGCAAAATGATAAACAATTTCGACCAAMTGATGCRAWTTCCCAAGCATGGAATGTTCAAAAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
*
2061 TTGTACGAAAGAATAGATCGTC
195 TTGTTCGAAAGAATAGATCGTC
* *
2083 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * *
2148 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTATTTCAAAGACCAAAATTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * **
2213 TTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-GGAAAT
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
* * * * * *
2277 TTTCTCTAAGGAATGGATCTTG
196 TGT-TCGAAAGAATAGATCGTC
* * * * * * * * * *
2299 TTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTGGCAAGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* *
2364 TCCAGAA-AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAATACTT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* ** * *
2428 GTTTGCAAAATGATAAACAATTTCTAGCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAA
129 GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAA
2493 ATTGTTCGAAAGAATAGATCGTC
194 ATTGTTCGAAAGAATAGATCGTC
** * * * * *
2516 TTGAATACTTTAAGGATCCGATGAAATAAGAGAACTAATAAAAGTTTAACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* ** * *
2581 TCAAAGAACAAAGAGAGAATCAATTCTCACAAAAATATGCTTTTT-ATTCAAAGACCAAAATTTG
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTG
* ** * * **
2645 TTTACAAAATGACAAACTTTTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-GGAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
* * * * * *
2709 TTTTCTCTAAGGAATGGATCTTG
195 TTGT-TCGAAAGAATAGATCGTC
* * * * * * * * * * *
2732 TTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTGGCATGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * * *
2797 TCCAGAA-ATCAAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAATA-TT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * * *
2860 GGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATTTTCCAAGCATGGAATGTTC-AAA
129 -GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAA
2924 AATTGTTCGAAAGAATAGATCGTC
193 AATTGTTCGAAAGAATAGATCGTC
* ** * * * *
2948 TAGAATACTTTAAGGATCCGATGAAATAAGAGAACTAGTAAAAGTTTAACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
** * *
3013 TCAAAGAACAAAGAGAGAAACAATTCTCACAAAAATAAGCCTTTTAATTCAAAGACCAAAATTTG
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTG
* * * * **
3078 TTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-GGAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
* * * * * *
3142 TTTTCTCTAAGGAATGGATCTTG
195 TTGT-TCGAAAGAATAGATCGTC
* * * * * * * * ** * *
3165 TCGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCCTAAAATTTTGACATGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
*
3230 TCCAGAA-AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * *
3294 GTTTGCAAAATGATAAACAATTTTGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAA
129 GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAA
3359 ATTGTTCGAAAGAATAGATCGTC
194 ATTGTTCGAAAGAATAGATCGTC
* *
3382 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * *
3447 TCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACCAAAATTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * *
3512 TTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-GAAAAT
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
* * * * * *
3576 TTTCTCTAAGGAATTGATCTTG
196 TGT-TCGAAAGAATAGATCGTC
* * * * * * * *
3598 TTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* *
3663 TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * * *
3728 TTGCAAAATGATAAACAATTTCGACCAACTGATGCGATTTCCCAAGCACGGAATGTTCAAAAAAA
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
*
3793 TGTTCGAAAGAATAGATCATC
196 TGTTCGAAAGAATAGATCGTC
* * * *
3814 TTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAACTTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * *
3879 TCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAAAATTTG
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAACTTG
* * * * **
3944 TTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGGAAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
* * * * *
4009 TT-TCTCTAAGGAATGGATCTTG
195 TTGT-TCGAAAGAATAGATCGTC
* * * * * * * * * * * *
4031 TTGAATGCTTTACGGAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTAGAAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * * *
4096 TCCAGAA-AACAAAGGGAGAAACAATTCTTACGTAAATAAGTTTTTAATACAATGACCAAAACTT
66 T-CA-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
* * *
4160 GTTTGCAAAATGATAAACAATTTTGACCAAATGATGTGATTTCCCAAGCGTGGAATGTTCAAAAA
129 GTTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAA
4225 ATTGTTCGAAAGAATAGATCGTC
194 ATTGTTCGAAAGAATAGATCGTC
* *
4248 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * ** *
4313 TCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAAATTTTAATTCAAAGACCAAAATTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * **
4378 TTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAA-GTTC-GGAAAT
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
* * * * * *
4441 TTTCTCTAAGGAATGGATCTTG
196 TGT-TCGAAAGAATAGATCGTC
* * * * * *
4463 TTGAATTCTTTAGGGAACC-ATAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTTGAAAGTTC
1 TTGAATACTTTAAGGATCCGAT-GTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTC
* * *
4527 TTCGAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTG
65 GTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
* * * * *
4592 TTCGCAAAATGACAAACTATATAGACCAAATGATGTGATTTCACAAGCATGGAATGTTCGAAAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
4657 TTGTTCGAAAGAATAGATCGTC
195 TTGTTCGAAAGAATAGATCGTC
* * * * * * *
4679 TTGAATACTTTAAGTATCCGATGTTATAGAAGAACTAGAAAAAGTTTGACTAGTTCGGAGGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
** * *
4744 TCAAACCACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCGAAACTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * *
4809 TTGCAAAATAATAAACAATTTCAG-CCAAATGATGCGATTTACCAAGAATGGAATGTTCAAAAAA
131 TTGCAAAATGACAAACAATTT-AGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
*
4873 TTGTACGAAAGAATAGATCGTC
195 TTGTTCGAAAGAATAGATCGTC
* * *
4895 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGTTCG
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
* * *
4960 TCAAACAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGT
66 TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
* * * * * ** *
5025 TTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTGCCGAGCATGGAATGTTCGGAAACT
131 TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
* * * * *
5090 T-TCTCTAAGGAATGGATCTTG
196 TGT-TCGAAAGAATAGATCGTC
* * * * * * * * *
5111 TCGAATGCTTT-AGGAAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGATAAGTTTGAAAGTTC
1 TTGAATACTTTAAGG-ATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTC
* *
5175 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTG
65 GTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
* * * * * *
5240 TTTGGAAGATGATAAACAATTTTGACCAAATGTTGCGATTTCCCAAGCATGGAATGTTCAAAAAA
130 TTTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAA
*
5305 TTGTACGAAAGAATAGATCGTC
195 TTGTTCGAAAGAATAGATCGTC
*
5327 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAA
1 TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAA
5387 ATTTCTCTAA
Statistics
Matches: 3776, Mismatches: 777, Indels: 101
0.81 0.17 0.02
Matches are distributed among these distances:
214 10 0.00
215 255 0.07
216 2094 0.55
217 1294 0.34
218 119 0.03
219 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (216 bp):
TTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCG
TCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
TTGCAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCAAAAAAT
TGTTCGAAAGAATAGATCGTC
Found at i:1328 original size:433 final size:433
Alignment explanation
Indices: 519--5298 Score: 7168
Period size: 433 Copynumber: 11.0 Consensus size: 433
509 NNNNNNNNNN
519 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* ** *
584 CCAAAGTTAAAAAATAGCTAATAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
649 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
*
714 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
* **
779 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTTAGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* * * * *
844 GTTCGTCAAAGAACAAAGAGAGAAATATTTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
**
909 TTTGTTTACAAAATGACAAACTATTTAGGTCAAATGATTTGAT
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* **
952 TTCCCGAGCATGGTATGTTCAAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * *
1017 CCAAAGTTAAAAAATAGCTTGTAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAAAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
1082 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* * * *
1147 AATTTTGACCAAATGATGTGATTTCCCAAGCATGGAATGTTCCAAAAATTGTTCGGAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
*
1212 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
*
1277 GTTCGTCAAACAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
*
1342 TTTATTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* * * *
1385 TTCCCGAGCATGGAATTTTCGGAAATTTTCTCTAAGGAATTGATCTTGTTGAATACTTTAGGGAA
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * *
1450 CCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGAAAGTTCGTCCA-AGAACAAAGAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* *
1514 GAAACAATTCTCATGTAAATAAGTTTTTAATTA-AAAGACCAATACTTGTTTGCAAAATGATAAA
131 GAAACAATTCTCACGTAAATAAGTTTTTAA-TACAAAGACCAAAACTTGTTTGCAAAATGATAAA
* * * *
1578 CAATTTCGACCAACTGATGCGATTTCCCAAGCACGGAATGTTCAAAAAAATGTTCGAAAGAATAG
195 CAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAG
* * * *
1643 ATCATCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAACTTTGACACGTTCGGA
260 ATCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA
* *
1708 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAA
325 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAA-AAAGTTTTTAATTCAAAGACCAA
1773 AATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
389 AATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* * * * *
1818 TTCCCGAGCATGGAATGTTCGGAAATTTKCTCTWAGGAATRGATCTTGTTGAATACTTTASGGAD
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * * * * * * *
1883 CCAAARTTAAAAAATARCTCGTAARAKTTTGACAWGTTTGAAAGTTCGTCCARARARCAAARAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* * * * * *
1948 GAAACAATTCTCACRTAAATAARTTTTTAATWCRAMGACCAAWACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* * * * *
2013 AATTTCGACCAAMTGATGCRAWTTCCCAAGCATGGAATGTTCAAAAAATTGTACGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
2078 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
*
2143 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTATTTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
2208 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
2251 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* *
2316 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGGCAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
*
2381 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
** *
2446 AATTTCTAGCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
** * * *
2511 TCGTCTTGAATACTTTAAGGATCCGATGAAATAAGAGAACTAATAAAAGTTTAACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
*
2576 GTTCGTCAAAGAACAAAGAGAGAATCAATTCTCAC--AAAAATATGCTTTTT-ATTCAAAGACCA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAA-A-G-TTTTTAATTCAAAGACCA
*
2638 AAATTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATTTGAT
388 AAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
2684 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * * *
2749 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGGCATGTTTGAAAGTTCGTCCAGAAATCAAATAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
*
2814 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAATA-TTGGTTTGCAAAATGATAAA
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTT-GTTTGCAAAATGATAAA
* *
2878 CAATTTCGACCAAATGATGCGATTTTCCAAGCATGGAATGTTC-AAAAATTGTTCGAAAGAATAG
195 CAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAG
* ** * *
2942 ATCGTCTAGAATACTTTAAGGATCCGATGAAATAAGAGAACTAGTAAAAGTTTAACAAGTTCGGA
260 ATCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA
* *
3007 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCAC-AAAAATAAGCCTTTTAATTCAAAGACCA
325 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAA-AAG-TTTTTAATTCAAAGACCA
3071 AAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
388 AAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
*
3117 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTCGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * *
3182 CCAAAGTTAAAAAATAGCTCCTAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
3247 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
*
3312 AATTTTGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
3377 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
*
3442 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
3507 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* * * *
3550 TTCCCGAGCATGGAATGTTCGAAAATTTTCTCTAAGGAATTGATCTTGTTGAATACTTTAGGGAA
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * *
3615 CCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGAAAGTTCGTCCA-AGAACAAAGAGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* *
3679 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* * * *
3744 AATTTCGACCAACTGATGCGATTTCCCAAGCACGGAATGTTCAAAAAAATGTTCGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
* * *
3809 TCATCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAACTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* *
3874 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAA-AAAGTTTTTAATTCAAAGACCAAA
3939 ATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
390 ATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* *
3983 TTCCCGAGCATGGAATGTTCGGAAAATTTCTCTAAGGAATGGATCTTGTTGAATGCTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * *
4048 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTAGAAAGTTCGTCCAGAAAACAAAGGGA
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* *
4113 GAAACAATTCTTACGTAAATAAGTTTTTAATACAATGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* * *
4178 AATTTTGACCAAATGATGTGATTTCCCAAGCGTGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
4243 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* **
4308 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAAATTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
4373 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* * *
4416 TTCCCGAGCATGGAA-GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATTCTTTAGGGAA
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * *
4480 CCATAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTTGAAAGTTC-TTC-GAAGAACAAAGAG
66 CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAA-AACAAAGAG
* * * *
4543 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTGTTCGCAAAATGACAAA
130 AGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAA
* * * * *
4608 CTATATAGACCAAATGATGTGATTTCACAAGCATGGAATGTTCGAAAAATTGTTCGAAAGAATAG
195 CAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAG
* * * *
4673 ATCGTCTTGAATACTTTAAGTATCCGATGTTATAGAAGAACTAGAAAAAGTTTGACTAGTTCGGA
260 ATCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA
* ** * * *
4738 GGTTCGTCAAACCACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCGAA
325 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
* * * * * **
4803 ACTTGTTTGCAAAATAATAAACAATTTCAG-CCAAATGATGCGAT
390 ATTTGTTTACAAAATGACAAACTATTT-AGACCAAATGATTTGAT
* * * ** * * * * * * * *
4847 TTACCAAGAATGGAATGTTCAAAAAATTGT-ACGAAAGAATAGATCGTCTTGAATACTTTAAGGA
1 TTCCCGAGCATGGAATGTTC-GGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
* * * * * * * * *
4911 TCCGATGTTATAAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGTTCGT-CA-AACAACAAAGA
65 GCCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAA-AACAAAGA
* * * * *
4974 GAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAA
* ** * * ** * * *
5039 ACTATTTAGACCAAATGATTTGATTTGCCGAGCATGGAATGTTCGGAAACTT-TCTCTAAGGAAT
194 ACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGT-TCGAAAGAAT
* * * * * * * * * * * * *
5103 GGATCTTGTCGAATGCTTT-AGGAAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGATAAGTTT
258 AGATCGTCTTGAATACTTTAAGG-ATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTC
* * * *
5167 GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACC
322 GGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACC
* ** * * * * *
5232 AAAACTTGTTTGGAAGATGATAAACAATTTTGACCAAATG-TTGCGAT
387 AAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT-TGAT
*
5279 TTCCCAAGCATGGAATGTTC
1 TTCCCGAGCATGGAATGTTC
5299 AAAAAATTGT
Statistics
Matches: 4010, Mismatches: 311, Indels: 53
0.92 0.07 0.01
Matches are distributed among these distances:
430 3 0.00
431 301 0.08
432 1031 0.26
433 2087 0.52
434 584 0.15
435 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.28
Consensus pattern (433 bp):
TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
CCAAAGTTAAAAAATAACTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
Found at i:2190 original size:866 final size:865
Alignment explanation
Indices: 519--6892 Score: 7651
Period size: 866 Copynumber: 7.3 Consensus size: 865
509 NNNNNNNNNN
519 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
** *
584 CCAAAGTTAAAAAATAGCTAATAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
649 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
714 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
**
779 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTTAGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* *
844 GTTCGTCAAAGAACAAAGAGAGAAATATTTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
** * **
909 TTTGTTTACAAAATGACAAACTATTTAGGTCAAATGATTTGATTTCCCGAGCATGGTATGTTCAA
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
* * *
974 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTTGT
456 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTCGT
* * *
1039 AAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAAAGAGAAACAATTCTCACGTAAATAA
521 AAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AAAACAAAGAGAGAAACAATTCTCACGTAAATAA
* * *
1104 GTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTTGACCAAATGATGTGAT
585 GTTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGAT
* *
1169 TTCCCAAGCATGGAATGTTCCAAAAATTGTTCGGAAGAATAGATCGTCTTGAATACTTTAAGGAT
650 TTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGAT
* *
1234 CCGATGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAACAACAAAGAGAG
715 CCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAG
*
1299 AAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTACAAAATGACAAACT
780 AAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACT
1364 ATTTAGACCAAATGATTTGAT
845 ATTTAGACCAAATGATTTGAT
* * * *
1385 TTCCCGAGCATGGAATTTTCGGAAATTTTCTCTAAGGAATTGATCTTGTTGAATACTTTAGGGAA
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * *
1450 CCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAGTTTGAAAGTTCGTCCA-AGAACAAAGAGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* *
1514 GAAACAATTCTCATGTAAATAAGTTTTTAATTA-AAAGACCAATACTTGTTTGCAAAATGATAAA
131 GAAACAATTCTCACGTAAATAAGTTTTTAA-TACAAAGACCAAAACTTGTTTGCAAAATGATAAA
* * *
1578 CAATTTCGACCAACTGATGCGATTTCCCAAGCACGGAATGTTCAAAAAAATGTTCGAAAGAATAG
195 CAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAG
* * *
1643 ATCATCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAACTTTGACACGTTCGGA
260 ATCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA
1708 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAA
325 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAAT-AAGCTTTTAATTCAAAGACCAA
1773 AATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC
389 AATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC
* * * * * * *
1838 GGAAATTTKCTCTWAGGAATRGATCTTGTTGAATACTTTASGGADCCAAARTTAAAAAATARCTC
454 GGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTC
* * * * * * *
1903 GTAARAKTTTGACAWGTTTGAAAGTTCGTCCARARARCAAARAGAGAAACAATTCTCACRTAAAT
519 GTAAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AAAACAAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
1968 AARTTTTTAATWCRAMGACCAAWACTTGTTTGCAAAATGATAAACAATTTCGACCAAMTGATGCR
583 AAGTTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCG
* *
2033 AWTTCCCAAGCATGGAATGTTCAAAAAATTGTACGAAAGAATAGATCGTCTTGAATACTTTAAGG
648 ATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGG
2098 ATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAG
713 ATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAG
*
2163 AGAAACAATTCTCACGTAAAAAAGTTTTTATTTCAAAGACCAAAATTTGTTTACAAAATGACAAA
778 AGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAA
2228 CTATTTAGACCAAATGATTTGAT
843 CTATTTAGACCAAATGATTTGAT
2251 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
*
2316 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGGCAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
*
2381 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* *
2446 AATTTCTAGCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
* * * *
2511 TCGTCTTGAATACTTTAAGGATCCGATGAAATAAGAGAACTAATAAAAGTTTAACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* * * *
2576 GTTCGTCAAAGAACAAAGAGAGAATCAATTCTCACAAAAATATGCTTTTTATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
*
2641 TTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
* *
2706 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCGT
456 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTCGT
* * * * *
2771 AAAATTTTGGCATGTTTGAAAGTTCGTCCAGAAATCAAATAGAGAAACAATTCTCACGTAAATAA
521 AAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AAAACAAAGAGAGAAACAATTCTCACGTAAATAA
2836 GTTTTTAATACAAAGACCAATA-TTGGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGA
585 GTTTTTAATACAAAGACCAATACTT-GTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGA
* *
2900 TTTTCCAAGCATGGAATGTTC-AAAAATTGTTCGAAAGAATAGATCGTCTAGAATACTTTAAGGA
649 TTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGA
** * *
2964 TCCGATGAAATAAGAGAACTAGTAAAAGTTTAACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGA
714 TCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGA
* *
3029 GAAACAATTCTCAC-AAAAATAAGCCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAA
779 GAAACAATTCTCACGTAAAA-AAG-TTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAA
3093 ACTATTTAGACCAAATGATTTGAT
842 ACTATTTAGACCAAATGATTTGAT
*
3117 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTCGAATACTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* *
3182 CCAAAGTTAAAAAATAGCTCCTAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
3247 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
*
3312 AATTTTGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
*
3377 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* *
3442 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
*
3507 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGA
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
* *
3572 AAATTTTCTCTAAGGAATTGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGT
456 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTCGT
* *
3637 AAGAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
521 AAAAGTTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* *
3702 TTTTTAATTCAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAACTGATGCGATT
586 TTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATT
* * *
3767 TCCCAAGCACGGAATGTTCAAAAAAATGTTCGAAAGAATAGATCATCTTGAATACTTTAAGGATC
651 TCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATC
* *
3832 CGATGATATAAAAGAACTAGTAAAACTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAGA
716 CGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAGA
* *
3897 AACAATTCTCACATAAATAAAGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACT
781 AACAATTCTCACGTAAA-AAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACT
3962 ATTTAGACCAAATGATTTGAT
845 ATTTAGACCAAATGATTTGAT
* *
3983 TTCCCGAGCATGGAATGTTCGGAAAATTTCTCTAAGGAATGGATCTTGTTGAATGCTTTACGGAG
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * *
4048 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTAGAAAGTTCGTCCAGAAAACAAAGGGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* *
4113 GAAACAATTCTTACGTAAATAAGTTTTTAATACAATGACCAAAACTTGTTTGCAAAATGATAAAC
131 GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
* * *
4178 AATTTTGACCAAATGATGTGATTTCCCAAGCGTGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
196 AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
*
4243 TCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
261 TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
* **
4308 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAAATTTTAATTCAAAGACCAAAA
326 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
4373 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAA-GTTCGG
391 TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
* * *
4437 AAATTTTCTCTAAGGAATGGATCTTGTTGAATTCTTTAGGGAACCATAGTTAAAAAATAACTCGT
456 AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTCGT
* * *
4502 AAAAGTTTGACAAGTTTGAAAGTTCTTCGAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
521 AAAAGTTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
4567 TTTTTAATTCAAAGACCAATACTTGTTCGCAAAATGACAAACTATATAGACCAAATGATGTGATT
586 TTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATT
* * *
4632 TCACAAGCATGGAATGTTCGAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGTATC
651 TCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATC
* * * * **
4697 CGATGTTATAGAAGAACTAGAAAAAGTTTGACTAGTTCGGAGGTTCGTCAAACCACAAAGAGAGA
716 CGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAGA
* * * * * * * *
4762 AACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCGAAACTTGTTTGCAAAATAATAAACAA
781 AACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTA
**
4827 TTTCAG-CCAAATGATGCGAT
846 TTT-AGACCAAATGATTTGAT
* * * ** * * * * * * * *
4847 TTACCAAGAATGGAATGTTCAAAAAATTGT-ACGAAAGAATAGATCGTCTTGAATACTTTAAGGA
1 TTCCCGAGCATGGAATGTTC-GGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
* * * * * * * * * *
4911 TCCGATGTTATAAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGTTCGT-CA-AACAACAAAGA
65 GCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAA-AACAAAGA
* * * * *
4974 GAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAA
* * ** * * ** * * *
5039 ACTATTTAGACCAAATGATTTGATTTGCCGAGCATGGAATGTTCGGAAACTT-TCTCTAAGGAAT
194 ACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGT-TCGAAAGAAT
* * * * * * * * * * * * * *
5103 GGATCTTGTCGAATGCTTT-AGGAAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGATAAGTTT
258 AGATCGTCTTGAATACTTTAAGG-ATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTC
* * * * *
5167 GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACC
322 GGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACC
* ** * * * * * *
5232 AAAACTTGTTTGGAAGATGATAAACAATTTTGACCAAATG-TTGCGATTTCCCAAGCATGGAATG
387 AAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT-TGATTTCCCGAGCATGGAATG
** * * * * * * * * * * * * *
5296 TTCAAAAAATTGT-ACGAAAGAATAGATCGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGA
451 TTC-GGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATA
* * * * ** *** *
5360 ACTAGTAAAAGTTTGACAAGTTCGAAAATTTC-TCTAAGGA-TTGGATCTTGTTGAATACTTCAA
515 ACTCGTAAAAGTTTGACAAGTTTG-AAAGTTCGTCCAAAAACAAAGA----G-AGAA-A---CAA
* * * * ** * * * * ****
5423 GGATC-CGATGATATAAAATAAATCGTAAAAGTTTGAC-AAGTTCGGAAGTTCATCAAAGAACAA
570 --TTCTC-ACG---T-AAATAAGT-TTTTAA---T-ACAAAG-AC-CAA-TACTTGTTTG--CAA
** * * ** * * *
5486 AGA-GGGAAACAATTCTC-ACATAAAT-AAGCTTTTAATTCAAAGACCA--AAATTTGTTTACAA
618 A-ATGATAAACAATT-TCGAC-CAAATGATGCGATT--TCCCAAG--CATGGAA--TG-TT-C--
* * * * * *
5546 AATGACAAACTAT-TTAGACCAAATGATTTTATTTCCCGAGCATGGAATGATCGGAAATTTTCTC
670 AA--A-AAA-T-TGTT---CGAAA-GA----A--T----AG-ATCG--T-CT-TG-AA--TACTT
* ** * * *
5610 TAAGGAAT-GGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTG
708 TAAGG-ATCCGA---TGTT--ATA----AAAGA-AC-TAGTA----AA-A----G------TTTG
* * *** * * *** * * **
5674 ACAAGTTTGAAAGTTC-GTCAAGAA-AACAAAGAGAGA-AACAATTCTCATTTAAATAAGTTTTT
746 ACAAGTTCGGAAGTTCGTCAAAGAACAA-AGAGAGAAACAA-TTCTCACGTAAA-A-AAGTTTTT
*
5736 AAATCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
807 AATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGAT
* *
5795 ATCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAT
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
* * * *
5860 CTAAAGTTAAAAAATAGCTCTTAAAATTTTGACATGTTTGAAAGTTCATCCAGAAAACAAAGAGA
66 CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
* * * *
5925 GAAACAATTCTCATGTAAATAAGTTTTTAAGT-CAAAGACCAAAATTTGTTTACAAAATGACAAA
131 GAAACAATTCTCACGTAAATAAGTTTTTAA-TACAAAGACCAAAACTTGTTTGCAAAATGATAAA
* * ** * * * * * * *
5989 CTATTTAGACCAAATGATTTGATTTCCCGACCATGGAATGTTC-AGAAATTTTCTCTAAGGAATG
195 CAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGT-TCGAAAGAATA
* * * * * * * * * * * *
6053 GATCTTATTGAATACTTTAGGGAACCGAAGTTAAAAAATAATTCGTAAAAGTTTGACAAGTTTGA
259 GATCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGG
* * * * * * *
6118 AAGTTTGTCCAAGAACAAAGAGTGAAAAAATTCTCACGTAAATAAG-TATTTAATTCATAGAACA
324 AAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCT-TTTAATTCAAAGACCA
* *** * * *
6182 AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAGTGCT
388 AAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTT
** * ** * ** ***
6247 AAGAAAATAGCTCTAAGGAATGGATCTTGTTGAATTCTTTTGGGAA-CTTTGTTAAAAAATAACT
453 CGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACT
* * *
6311 CGTAAAAGTTTTG-CAA-TTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
518 CGTAAAAG-TTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * * *
6374 TAAGTTTTTAATTCAATGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGACCAAATGATGC
582 TAAGTTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGC
** ** * * * * * * * *
6439 GATTTCCCGTGCATGGAATGTTCGGAAAATTGCTT-TAAGGATTGGATCTTGTTGAATACTGTAG
647 GATTTCCCAAGCATGGAATGTTCAAAAAATTG-TTCGAAAGAATAGATCGTCTTGAATACTTTAA
* * * * * *
6503 GGAACCGAAGTTATAAAAGACCTAGTAAAAGTTTGACAAGTTCGGAAGCTCATCCAAGAACAAAG
711 GGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAG
* * * *
6568 AGAGAAACAATTCTTATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACA
776 AGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACA
* * * * **
6633 AACAATTAACACCAAATTATGCGAT
841 AACTATTTAGACCAAATGATTTGAT
* * *
6658 TTCACGAGCATGGAATGTTCGAAAATTTGCTCTAAGGAATGGATCTTGTTGAATACTTTA-GGCA
1 TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGG-A
** * * *
6722 AACAAAGTTAAAAAATAACTCGTAAAAGTTTTG-CAA-TTTGACAGTTCGTCCA-AGAACAAAGA
65 GCCAAAGTTAAAAAATAGCTCGTAAAA-TTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGA
* * * *
6784 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAA
129 GAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAA
* * * **
6849 ACTATATAGACCAAATGATTTGATTTCCCAAGCATGGAATGTTC
194 ACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC
6893 GGAAATTTTC
Statistics
Matches: 4792, Mismatches: 570, Indels: 297
0.85 0.10 0.05
Matches are distributed among these distances:
860 1 0.00
861 112 0.02
862 24 0.01
863 415 0.09
864 231 0.05
865 816 0.17
866 2159 0.45
867 236 0.05
868 4 0.00
869 1 0.00
870 1 0.00
872 3 0.00
873 1 0.00
874 5 0.00
875 2 0.00
877 1 0.00
878 7 0.00
879 6 0.00
880 2 0.00
881 3 0.00
882 4 0.00
883 2 0.00
884 2 0.00
885 7 0.00
887 20 0.00
888 6 0.00
889 7 0.00
890 9 0.00
891 4 0.00
892 4 0.00
893 2 0.00
894 1 0.00
895 2 0.00
897 3 0.00
898 4 0.00
899 3 0.00
900 1 0.00
902 5 0.00
903 2 0.00
907 1 0.00
908 2 0.00
909 3 0.00
911 1 0.00
912 1 0.00
913 7 0.00
914 4 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 4 0.00
920 4 0.00
921 9 0.00
922 7 0.00
923 6 0.00
924 23 0.00
926 6 0.00
927 2 0.00
928 2 0.00
929 3 0.00
930 2 0.00
931 1 0.00
932 5 0.00
933 7 0.00
934 1 0.00
936 2 0.00
937 5 0.00
938 1 0.00
939 3 0.00
941 1 0.00
942 1 0.00
943 3 0.00
944 1 0.00
945 4 0.00
946 21 0.00
947 34 0.01
948 170 0.04
949 317 0.07
950 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (865 bp):
TTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAG
CCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAAC
AATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGA
TCGTCTTGAATACTTTAAGGATCCGATGATATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAA
GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAA
TTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGG
AAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAACCAAAGTTAAAAAATAACTCGT
AAAAGTTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATACAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATT
TCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATC
CGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAAAGAGAGA
AACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTA
TTTAGACCAAATGATTTGAT
Found at i:6263 original size:216 final size:216
Alignment explanation
Indices: 5379--6998 Score: 2129
Period size: 216 Copynumber: 7.5 Consensus size: 216
5369 AGTTTGACAA
* * * * * * * * *
5379 GTTC-GAAAATTTCTCTAAGGATTGGATCTTGTTGAATACTTCAAGGATCCGATGATATAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* * * * * *
5443 AATCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGAACAAAGAGGGAAACAATTCTCACATA
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTA
*
5508 AATAAGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
131 AATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
*
5573 TTTATTTCCCGAGCATGGAAT
196 TTGATTTCCCGAGCATGGAAT
* * *
5594 GATCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* * * **
5659 GCTCGTAAAATTTTGACAAGTTTGAAAGTTCGT-CAAGAAAACAAAGAGAGAAACAATTCTCATT
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAG--AACAAAGAGAGAAACAATTCTCACG
*
5723 TAAATAAGTTTTTAAATCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATG
129 TAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATG
*
5788 ATTTGATATCCCGAGCATGGAAT
194 ATTTGATTTCCCGAGCATGGAAT
* * *
5811 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGATCTAAAGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* * * * * *
5876 GCTCTTAAAATTTTGACATGTTTGAAAGTTCATCCAGAAAACAAAGAGAGAAACAATTCTCATGT
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCA-AGAACAAAGAGAGAAACAATTCTCACGT
*
5941 AAATAAGTTTTTAAGTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
130 AAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
*
6006 TTTGATTTCCCGACCATGGAAT
195 TTTGATTTCCCGAGCATGGAAT
* * *
6028 GTTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTTAGGGAACCGAAGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* ** * *
6093 ATTCGTAAAAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACAAAGAGTGAAAAAATTCTCACGTA
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* * * *
6158 AATAAGTATTTAATTCATAGAACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
131 AATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
*** * *
6223 GCAATTTCTCGAGCATGGAGT
196 TTGATTTCCCGAGCATGGAAT
* ** * ** * * ***
6244 GCTAAGAAAATAGCTCTAAGGAATGGATCTTGTTGAATTCTTTTGGGAA-CTTTGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
*
6308 ACTCGTAAAAGTTTTG-CAA-TTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT
66 ACTCGTAAAAG-TTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT
* * * *
6371 AAATAAGTTTTTAATTCAATGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGACCAAATGA
130 AAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** *
6436 TGCGATTTCCCGTGCATGGAAT
195 TTTGATTTCCCGAGCATGGAAT
* * * * * * * *
6458 GTTCGGAAAATTGCTTTAAGGATTGGATCTTGTTGAATACTGTAGGGAACCGAAGTTATAAAAGA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* * * * * * *
6523 CCTAGTAAAAGTTTGACAAGTTCGGAAGCTCATCCAAGAACAAAGAGAGAAACAATTCTTATGTA
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTA
* * * * *
6588 AATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAAACAATTAACACCAAATTAT
131 AATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
** *
6653 GCGATTTCACGAGCATGGAAT
196 TTGATTTCCCGAGCATGGAAT
* * * *
6674 GTTCGAAAATTTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGCAAACAAAGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* *
6739 ACTCGTAAAAGTTTTG-CAA-TTTGACAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
66 ACTCGTAAAAG-TTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT
*
6802 AAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATATAGACCAAATGA
130 AAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
*
6867 TTTGATTTCCCAAGCATGGAAT
195 TTTGATTTCCCGAGCATGGAAT
* * *
6889 GTTCGGAAATTTTCTCTAAGGAATGAATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATA
1 GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
* * * *
6954 GCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAA
66 ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCA-AGAACAAA
Statistics
Matches: 1231, Mismatches: 161, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
214 164 0.13
215 237 0.19
216 421 0.34
217 406 0.33
218 2 0.00
219 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (216 bp):
GTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACCAAAGTTAAAAAATA
ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
TTGATTTCCCGAGCATGGAAT
Found at i:6487 original size:430 final size:430
Alignment explanation
Indices: 5383--6998 Score: 2180
Period size: 430 Copynumber: 3.7 Consensus size: 430
5373 TGACAAGTTC
* * * * * * * * * *
5383 GAAAATTTCTCTAAGGATTGGATCTTGTTGAATACTTCAAGGATCCGATGATATAAAATAAATCG
1 GAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGA-ACTAAGTTAAAAAATAACTCG
* * * *
5448 TAAAAG-TTTGACAAGTTCGGAAGTTCATCAAAGAACAAAGAGGGAAACAATTCTCACATAAATA
65 TAAAAGTTTTGACAA-TTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
* *
5512 AGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTTA
129 AGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
*
5577 TTTCCCGAGCATGGAATGATCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
194 TTTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
* *
5642 GCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGT-CAAGAAAACAAAGA
259 ACCAAAGTTAAAAAATAGCTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAG--AACAAAGA
* * *
5706 GAGAAACAATTCTCATTTAAATAAGTTTTTAAATCAAAGACCAAAATTTGTTTACAAAATGACAA
322 GAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAA
** * * **
5771 ACTATTTAGACCAAATGATTTGATATCCCGAGCATGGAATGTTCG
387 ACTATTTAGACCAAATGATGCGATTTCACGAGCATGGAATG-TAA
* * * * * *
5816 GAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGATCTAAAGTTAAAAAATAGCTCT
1 GAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACT-AAGTTAAAAAATAACTCG
* * * *
5881 TAAAA-TTTTGACATGTTTGAAAGTTCATCCAGAAAACAAAGAGAGAAACAATTCTCATGTAAAT
65 TAAAAGTTTTGACA-ATTCGAAAGTTCATCCA-AGAACAAAGAGAGAAACAATTCTCACGTAAAT
*
5945 AAGTTTTTAAGTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTG
128 AAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTG
* * * *
6010 ATTTCCCGACCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTTAGGG
193 ATTTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGG
* ** *
6075 AACCGAAGTTAAAAAATAATTCGTAAAAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACAAAGAG
258 AACCAAAGTTAAAAAATAGCTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAG
* * * * * *
6140 TGAAAAAATTCTCACGTAAATAAGTATTTAATTCATAGAACAAAACTTGTTTACAAAATGACAAA
323 AGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAAA
* * *
6205 CTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAGTGCTAA
388 CTATTTAGACCAAATGATGCGATTTCACGAGCATGGAATG-TAA
* * * **
6249 GAAAATAGCTCTAAGGAATGGATCTTGTTGAATTCTTTTGGGAACTTTGTTAAAAAATAACTCGT
1 GAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTAAGTTAAAAAATAACTCGT
6314 AAAAGTTTTG-CAATTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGTTTTGACAATTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * **
6378 TTTTTAATTCAATGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGACCAAATGATGCGATT
131 TTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATT
* * * * * * *
6443 TCCCGTGCATGGAATGTTCGGAAAATTGCTTTAAGGATTGGATCTTGTTGAATACTGTAGGGAAC
196 TCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAAC
* * * * * * * * *
6508 CGAAGTTATAAAAGACCTAGTAAAAGTTTGACAAGTTCGGAAGCTCATCCAAGAACAAAGAGAGA
261 CAAAGTTAAAAAATAGCTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGA
* *
6573 AACAATTCTTATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAAACAA
326 AACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAAACTA
* * * **
6638 TTAACACCAAATTATGCGATTTCACGAGCATGGAATGTTC
391 TTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTAA
* *
6678 GAAAATTTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGCAAACAAAGTTAAAAAATAACTC
1 GAAAA-TTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGG-GAACTAAGTTAAAAAATAACTC
* * *
6743 GTAAAAGTTTTG-CAATTTGACAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
64 GTAAAAGTTTTGACAATTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
*
6807 AGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATATAGACCAAATGATTTGA
129 AGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
* *
6872 TTTCCCAAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGAATCTTGTTGAATACTTTACGGA
194 TTTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
* * *
6937 GCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAGAAAACAAA
259 ACCAAAGTTAAAAAATAGCTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AGAACAAA
Statistics
Matches: 1027, Mismatches: 147, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
429 6 0.01
430 323 0.31
431 250 0.24
432 29 0.03
433 220 0.21
434 195 0.19
435 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (430 bp):
GAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAACTAAGTTAAAAAATAACTCGT
AAAAGTTTTGACAATTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATT
TCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAAC
CAAAGTTAAAAAATAGCTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGA
AACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAACAAAATTTGTTTACAAAATGACAAACTA
TTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTAA
Done.