Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013202.1 Kokia drynarioides strain JFW-HI SEQ_128221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6212
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.32

Warning! 383 characters in sequence are not A, C, G, or T


Found at i:4803 original size:18 final size:18

Alignment explanation


    Indices: 4780--4814  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       4770 ATTAAATCAA

                              
       4780 TTCAACTGTTGATTTTTG
          1 TTCAACTGTTGATTTTTG

                   *  *      
       4798 TTCAACTTTTTATTTTT
          1 TTCAACTGTTGATTTTT

       4815 ACCAATCTCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.17, C:0.11, G:0.09, T:0.63


Consensus pattern (18 bp):   
TTCAACTGTTGATTTTTG
Done.