Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013205.1 Kokia drynarioides strain JFW-HI SEQ_128224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139165
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:225 original size:4 final size:4
Alignment explanation
Indices: 205--270 Score: 71
Period size: 4 Copynumber: 16.2 Consensus size: 4
195 AACACATTAC
* * * *
205 CTTT CTTT CCTT C-TT CTTT CTTT CCTCT CCTT CTTC CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT
253 CTTT CCTTT CTTT CTTT C
1 CTTT -CTTT CTTT CTTT C
271 CCGTTTATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.06
4 42 0.81
5 7 0.13
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (4 bp):
CTTT
Found at i:239 original size:17 final size:15
Alignment explanation
Indices: 205--271 Score: 72
Period size: 13 Copynumber: 4.7 Consensus size: 15
195 AACACATTAC
205 CTTTCTTTCCTTCTT
1 CTTTCTTTCCTTCTT
220 CTTTCTTTCC-TC-T
1 CTTTCTTTCCTTCTT
*
233 CCTTC-TTCCTTTCTTT
1 CTTTCTTTCC-TTC-TT
249 CTTTCTTTCC-T-TT
1 CTTTCTTTCCTTCTT
262 CTTTCTTTCC
1 CTTTCTTTCC
272 CGTTTATTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
12 4 0.09
13 17 0.38
14 4 0.09
15 11 0.24
16 5 0.11
17 4 0.09
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (15 bp):
CTTTCTTTCCTTCTT
Found at i:251 original size:29 final size:27
Alignment explanation
Indices: 211--268 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 27
201 TTACCTTTCT
211 TTCCTTCTTCTTTCTTTCCTCTCCTTC
1 TTCCTTCTTCTTTCTTTCCTCTCCTTC
* *
238 TTCCTTTCTTTCTTTCTTTCCTTTCTTTC
1 TTCC-TTC-TTCTTTCTTTCCTCTCCTTC
267 TT
1 TT
269 TCCCGTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 4 0.15
28 3 0.11
29 20 0.74
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (27 bp):
TTCCTTCTTCTTTCTTTCCTCTCCTTC
Found at i:3220 original size:17 final size:16
Alignment explanation
Indices: 3190--3238 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
3180 TTATAAAGTG
*
3190 GTATGAACTATTATTA
1 GTATGAACTGTTATTA
*
3206 TGTATGAATTGTTATCTA
1 -GTATGAACTGTTAT-TA
*
3224 GCATGAACTGTTATT
1 GTATGAACTGTTATT
3239 TCATTTGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 1 0.04
17 24 0.89
18 2 0.07
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (16 bp):
GTATGAACTGTTATTA
Found at i:12620 original size:23 final size:23
Alignment explanation
Indices: 12594--12639 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
12584 AAGAAGATAC
*
12594 CTATGCACTTAAGGCTGATATGG
1 CTATGCACTTAAAGCTGATATGG
12617 CTATGCACTTAAAGCTGATATGG
1 CTATGCACTTAAAGCTGATATGG
12640 TGTCTAACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (23 bp):
CTATGCACTTAAAGCTGATATGG
Found at i:16353 original size:16 final size:17
Alignment explanation
Indices: 16332--16365 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16322 TTTAAAACCC
*
16332 TAAATA-CTAACCATTA
1 TAAATATCTAAACATTA
16348 TAAATATCTAAACATTA
1 TAAATATCTAAACATTA
16365 T
1 T
16366 TCTAACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAATATCTAAACATTA
Found at i:18745 original size:24 final size:24
Alignment explanation
Indices: 18710--18758 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
18700 ATCCTAAAAT
*
18710 GGAGAGAAAAGGATGGTGAGA-GAA
1 GGAGAGAAAAGG-GGGTGAGATGAA
18734 GGAGA-AATAAGGGGGTGAGATGAA
1 GGAGAGAA-AAGGGGGTGAGATGAA
18758 G
1 G
18759 TGGGATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.47, T:0.10
Consensus pattern (24 bp):
GGAGAGAAAAGGGGGTGAGATGAA
Found at i:19492 original size:19 final size:19
Alignment explanation
Indices: 19468--19506 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
19458 GTGTACTTAA
*
19468 AGAAACTGATACAGAAACG
1 AGAAACTCATACAGAAACG
*
19487 AGAAACTCTTACAGAAACG
1 AGAAACTCATACAGAAACG
19506 A
1 A
19507 CCTAATATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.18, G:0.18, T:0.13
Consensus pattern (19 bp):
AGAAACTCATACAGAAACG
Found at i:24764 original size:28 final size:28
Alignment explanation
Indices: 24733--24790 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
24723 TTTTCAAGCT
**
24733 AGAAACAATTTAACGCTCTACCCGAGCC
1 AGAAACAAGATAACGCTCTACCCGAGCC
**
24761 AGAATTAAGATAACGCTCTACCCGAGCC
1 AGAAACAAGATAACGCTCTACCCGAGCC
24789 AG
1 AG
24791 GAGTAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.17
Consensus pattern (28 bp):
AGAAACAAGATAACGCTCTACCCGAGCC
Found at i:24801 original size:28 final size:28
Alignment explanation
Indices: 24743--24868 Score: 121
Period size: 28 Copynumber: 4.5 Consensus size: 28
24733 AGAAACAATT
*
24743 TAACGCTCTACCCGAGCCAGAATTA-AGA
1 TAACGCTCTACCCGAGCCAGAAGTAGA-A
*
24771 TAACGCTCTACCCGAGCCAGGAGTAGAA
1 TAACGCTCTACCCGAGCCAGAAGTAGAA
* * * * *
24799 TAATGCTCTACCTGAGCAAG-ATTCAGTA
1 TAACGCTCTACCCGAGCCAGAAGT-AGAA
* * *
24827 TAACGCTCTACCCAAGCCCGAAGTATAA
1 TAACGCTCTACCCGAGCCAGAAGTAGAA
*
24855 TAATGCTCTACCCG
1 TAACGCTCTACCCG
24869 GGTAAGATTC
Statistics
Matches: 78, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
27 2 0.03
28 73 0.94
29 3 0.04
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.21
Consensus pattern (28 bp):
TAACGCTCTACCCGAGCCAGAAGTAGAA
Found at i:24878 original size:56 final size:56
Alignment explanation
Indices: 24747--24880 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
24737 ACAATTTAAC
* * * *
24747 GCTCTACCCGAGCCAGAATTAAG-ATAACGCTCTACCCGAGCCAGGAGTAGAATAAT
1 GCTCTACCCGAGCAAG-ATTCAGTATAACGCTCTACCCAAGCCAGAAGTAGAATAAT
* * *
24803 GCTCTACCTGAGCAAGATTCAGTATAACGCTCTACCCAAGCCCGAAGTATAATAAT
1 GCTCTACCCGAGCAAGATTCAGTATAACGCTCTACCCAAGCCAGAAGTAGAATAAT
* *
24859 GCTCTACCCGGGTAAGATTCAG
1 GCTCTACCCGAGCAAGATTCAG
24881 AAATGTCACT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
55 5 0.07
56 62 0.93
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (56 bp):
GCTCTACCCGAGCAAGATTCAGTATAACGCTCTACCCAAGCCAGAAGTAGAATAAT
Found at i:27061 original size:52 final size:52
Alignment explanation
Indices: 26974--27212 Score: 229
Period size: 52 Copynumber: 4.6 Consensus size: 52
26964 GTAAATGAAA
* *
26974 AGGTCCAATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGAATATG
1 AGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTATGGAATATG
** * * *
27026 AGGTTTGATGACTAAGTGTCATCGTGAGTATATGAAATACTTTATGG-ATTTAA
1 AGGTCCGATGACTAAGTGTCATCGTGAGTATATG-AATCCTTTATGGAATAT-G
*
27079 AGGTCCGATGACTAAGTGTCAT-GTGAGTATAT-AGATCCTTTATGGATTATG
1 AGGTCCGATGACTAAGTGTCATCGTGAGTATATGA-ATCCTTTATGGAATATG
* * * ** * *
27130 ATGTCCGATGATTCT-A-TGTCATCGTGAGTATACGAATCCCTCGTGGATTATA
1 AGGTCCGATGA--CTAAGTGTCATCGTGAGTATATGAATCCTTTATGGAATATG
* *
27182 AGGTCCGGTGATTATA-TGTCATCGTGAGTAT
1 AGGTCCGATGACTA-AGTGTCATCGTGAGTAT
27213 TACATGAAAT
Statistics
Matches: 155, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
50 2 0.01
51 26 0.17
52 93 0.60
53 34 0.22
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTATGGAATATG
Found at i:27209 original size:104 final size:105
Alignment explanation
Indices: 26972--27212 Score: 271
Period size: 104 Copynumber: 2.3 Consensus size: 105
26962 TTGTAAATGA
* * **
26972 AAAGGTCCAATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTATGGAATATGAGGTTTGATGA
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTATGGAATATGAGGTCCGATGA
* * *
27037 CTAAGTGTCATCGTGAGTATATGAAATACTTTATGGATTT
66 CTAAGTGTCATCGTGAGTATACGAAATACCTCATGGATTT
* *
27077 AAAGGTCCGATGACTAAGTGTCAT-GTGAGTATAT-AGATCCTTTATGGATTATGATGTCCGATG
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGA-ATCCTTTATGGAATATGAGGTCCGATG
* *
27140 ATTCT-A-TGTCATCGTGAGTATACG-AATCCCTCGTGGA-TT
65 A--CTAAGTGTCATCGTGAGTATACGAAATACCTCATGGATTT
* *
27179 ATAAGGTCCGGTGATTATA-TGTCATCGTGAGTAT
1 A-AAGGTCCGATGACTA-AGTGTCATCGTGAGTAT
27213 TACATGAAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
102 3 0.03
103 29 0.25
104 59 0.50
105 24 0.21
106 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (105 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTATGGAATATGAGGTCCGATGA
CTAAGTGTCATCGTGAGTATACGAAATACCTCATGGATTT
Found at i:34188 original size:52 final size:52
Alignment explanation
Indices: 34102--34338 Score: 239
Period size: 52 Copynumber: 4.5 Consensus size: 52
34092 AATGAAAAAG
* * * *
34102 GGTCCGATGACTAAGTGACACCATGAGTAAATGAATCCTTTAAGGATTATAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAAGGATTATAA
* *
34154 GGTCTGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTATGGATT-TAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATG-AATCCTTTAAGGATTAT-AA
* * * *
34207 AGTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACA-AATTA-AGA
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTA-AGGATTATA-A
** * * * ***
34259 GGTCCGATGACTCTGTGACATCGTGAGTATACGAATCCGTCGTGGATTATAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAAGGATTATAA
34311 GGTCCGATGACTATA-TGTCATCGTGAGT
1 GGTCCGATGACTA-AGTGTCATCGTGAGT
34339 GTTAAATGAA
Statistics
Matches: 150, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
51 1 0.01
52 102 0.68
53 47 0.31
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (52 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTATATGAATCCTTTAAGGATTATAA
Found at i:34288 original size:105 final size:104
Alignment explanation
Indices: 34103--34338 Score: 255
Period size: 105 Copynumber: 2.3 Consensus size: 104
34093 ATGAAAAAGG
* * * * *
34103 GTCCGATGACTAAGTGACACCATGAGTAAATGAATCCTTTAAGGATTATAAGGTCTGATGACTAA
1 GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTAAGAATTATAAGGTCCGATGACTAA
* * * *
34168 GTGTCATCGTGAGTATATGAAATCCTTTATGGATT-TAAAA
66 GTGACATCGTGAGTATACG-AATCCGTCATGGATTAT-AAA
* * *
34208 GTTCGATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACA-AATTA-AGAGGTCCGATGACT
1 GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTA-AGAATTATA-AGGTCCGATGACT
** * *
34271 CTGTGACATCGTGAGTATACGAATCCGTCGTGGATTATAAG
64 AAGTGACATCGTGAGTATACGAATCCGTCATGGATTATAAA
34312 GTCCGATGACTATA-TGTCATCGTGAGT
1 GTCCGATGACTA-AGTGTCATCGTGAGT
34339 GTTAAATGAA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
104 39 0.35
105 70 0.64
106 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (104 bp):
GTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTAAGAATTATAAGGTCCGATGACTAA
GTGACATCGTGAGTATACGAATCCGTCATGGATTATAAA
Found at i:44883 original size:23 final size:23
Alignment explanation
Indices: 44791--44931 Score: 108
Period size: 23 Copynumber: 6.1 Consensus size: 23
44781 CTCTCCTTTA
* *
44791 TTAGCACTTCGTGTGCTCTTTGA
1 TTAGCACTTCGTGTGCTCTTCGT
* *
44814 TTAGCGCTTCGTGTGCT-TTCTGA
1 TTAGCACTTCGTGTGCTCTTC-GT
* * *
44837 TTAGCACTTTGTGTACTCTCCGT
1 TTAGCACTTCGTGTGCTCTTCGT
*
44860 TTAGCACTTAGTGTGCTCTTCGT
1 TTAGCACTTCGTGTGCTCTTCGT
* *
44883 TACCCAGCACTT-TTGTGCTCTTCGT
1 T---TAGCACTTCGTGTGCTCTTCGT
* * *
44908 TTAGTACTTCG-GTACTCTGCGT
1 TTAGCACTTCGTGTGCTCTTCGT
44930 TT
1 TT
44932 TTGTTCCGTA
Statistics
Matches: 95, Mismatches: 17, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
22 19 0.20
23 54 0.57
24 2 0.02
25 13 0.14
26 7 0.07
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (23 bp):
TTAGCACTTCGTGTGCTCTTCGT
Found at i:50443 original size:36 final size:30
Alignment explanation
Indices: 50405--50465 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
50395 AATCAAAGAA
50405 TAAAAATAATTAATTTTATGTGTTCATGAT
1 TAAAAATAATTAATTTTATGTGTTCATGAT
50435 TAAAAATAATTAATTTTATGTGTTCATGAT
1 TAAAAATAATTAATTTTATGTGTTCATGAT
50465 T
1 T
50466 TTAGTATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (30 bp):
TAAAAATAATTAATTTTATGTGTTCATGAT
Found at i:51200 original size:23 final size:22
Alignment explanation
Indices: 51139--51238 Score: 76
Period size: 23 Copynumber: 4.3 Consensus size: 22
51129 CTTAGCGCGT
* *
51139 TCTCCGTTTAGCACATTTTGTGC
1 TCTCCGATTAGCAC-TTGTGTGC
*
51162 TCTCCTTTATTAGCACTTCGTGTGC
1 TCTCC--GATTAGCACTT-GTGTGC
* *
51187 TCTCCGATTAGCACTTTATGTAC
1 TCTCCGATTAGCAC-TTGTGTGC
*
51210 TCTCC-ATTTAGCACTTAGTGTGG
1 TCTCCGA-TTAGCACTT-GTGTGC
51233 TCTCCG
1 TCTCCG
51239 TTACCCAGCA
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
22 3 0.05
23 37 0.61
24 4 0.07
25 17 0.28
ACGTcount: A:0.15, C:0.27, G:0.17, T:0.41
Consensus pattern (22 bp):
TCTCCGATTAGCACTTGTGTGC
Found at i:51213 original size:48 final size:46
Alignment explanation
Indices: 51139--51273 Score: 121
Period size: 48 Copynumber: 2.8 Consensus size: 46
51129 CTTAGCGCGT
* * * *
51139 TCTCCGTTTAGCACATTTTGTGCTCTCCTTTATTAGCACTTCGTGTGC
1 TCTCCGATTAGCACATTTTGTACTCTCC-AT-TTAGCACTTAGTGTGC
*
51187 TCTCCGATTAGCAC-TTTATGTACTCTCCATTTAGCACTTAGTGTGG
1 TCTCCGATTAGCACATTT-TGTACTCTCCATTTAGCACTTAGTGTGC
* ** *
51233 TCTCCG-TTACCCAGCACTTTTGTGTTCTCCATTTAGTACTT
1 TCTCCGATTA-GCA-CA-TTTTGTACTCTCCATTTAGCACTT
51274 CGATACTCTC
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
45 3 0.04
46 22 0.30
47 5 0.07
48 40 0.55
49 3 0.04
ACGTcount: A:0.16, C:0.27, G:0.16, T:0.42
Consensus pattern (46 bp):
TCTCCGATTAGCACATTTTGTACTCTCCATTTAGCACTTAGTGTGC
Found at i:51237 original size:46 final size:48
Alignment explanation
Indices: 51139--51238 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 48
51129 CTTAGCGCGT
* * * *
51139 TCTCCGTTTAGCACATTTTGTGCTCTCCTTTATTAGCACTTCGTGTGC
1 TCTCCGATTAGCACATTTTGTACTCTCCTATATTAGCACTTAGTGTGC
*
51187 TCTCCGATTAGCAC-TTTATGTACTCTCC-AT-TTAGCACTTAGTGTGG
1 TCTCCGATTAGCACATTT-TGTACTCTCCTATATTAGCACTTAGTGTGC
51233 TCTCCG
1 TCTCCG
51239 TTACCCAGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 20 0.43
47 4 0.09
48 22 0.48
ACGTcount: A:0.15, C:0.27, G:0.17, T:0.41
Consensus pattern (48 bp):
TCTCCGATTAGCACATTTTGTACTCTCCTATATTAGCACTTAGTGTGC
Found at i:55276 original size:34 final size:34
Alignment explanation
Indices: 55229--55294 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
55219 GTTAGTAAGC
55229 ATTGTCATGACA-TTCCTATTGTCATTACATTTTA
1 ATTGTCATGACATTTCC-ATTGTCATTACATTTTA
* *
55263 ATTGTCACT-ACATTTGCATTGTCATTGCATTT
1 ATTGTCA-TGACATTTCCATTGTCATTACATTT
55295 CCATTTGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 24 0.86
35 4 0.14
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (34 bp):
ATTGTCATGACATTTCCATTGTCATTACATTTTA
Found at i:55299 original size:17 final size:17
Alignment explanation
Indices: 55228--55307 Score: 65
Period size: 17 Copynumber: 4.6 Consensus size: 17
55218 TGTTAGTAAG
55228 CATTGTCA-TGACA-TTC
1 CATTGTCATTG-CATTTC
* *
55244 CTATTGTCATTACATTTT
1 C-ATTGTCATTGCATTTC
* * * *
55262 AATTGTCACTACATTTG
1 CATTGTCATTGCATTTC
55279 CATTGTCATTGCATTTC
1 CATTGTCATTGCATTTC
55296 CATTTGTCATTG
1 CA-TTGTCATTG
55308 TAATTTAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
16 1 0.02
17 38 0.75
18 12 0.24
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (17 bp):
CATTGTCATTGCATTTC
Found at i:55714 original size:40 final size:40
Alignment explanation
Indices: 55659--55749 Score: 182
Period size: 40 Copynumber: 2.3 Consensus size: 40
55649 TAAATAAAAG
55659 ACACTCCAATGTGGGTGTATTGTGAACTGTTCAAGGGGGA
1 ACACTCCAATGTGGGTGTATTGTGAACTGTTCAAGGGGGA
55699 ACACTCCAATGTGGGTGTATTGTGAACTGTTCAAGGGGGA
1 ACACTCCAATGTGGGTGTATTGTGAACTGTTCAAGGGGGA
55739 ACACTCCAATG
1 ACACTCCAATG
55750 CAAGTGTTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (40 bp):
ACACTCCAATGTGGGTGTATTGTGAACTGTTCAAGGGGGA
Found at i:59928 original size:17 final size:17
Alignment explanation
Indices: 59886--59934 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
59876 AACTAAATTA
*
59886 ACAA-AAAAATTCAATG
1 ACAATAAAAATGCAATG
59902 ACAAAATAAAAATGCAATG
1 AC--AATAAAAATGCAATG
59921 ACAATAAAAATGCA
1 ACAATAAAAATGCA
59935 TGCAAACTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.07
17 12 0.41
18 2 0.07
19 13 0.45
ACGTcount: A:0.63, C:0.12, G:0.08, T:0.16
Consensus pattern (17 bp):
ACAATAAAAATGCAATG
Found at i:62302 original size:15 final size:15
Alignment explanation
Indices: 62282--62311 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62272 ATTTTAAAAC
*
62282 GAAACAAGTAAAAGT
1 GAAACAAATAAAAGT
62297 GAAACAAATAAAAGT
1 GAAACAAATAAAAGT
62312 AAATGTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13
Consensus pattern (15 bp):
GAAACAAATAAAAGT
Found at i:67551 original size:6 final size:6
Alignment explanation
Indices: 67540--67585 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
67530 CAGCAATTTA
* *
67540 TTCTTT TTCTTT TTCTTT CTTCTTT TTCTTAT TTTTTT TTATTT TT
1 TTCTTT TTCTTT TTCTTT -TTCTTT TTCTT-T TTCTTT TTCTTT TT
67586 TCAAGTGACT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 25 0.69
7 11 0.31
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (6 bp):
TTCTTT
Found at i:67564 original size:13 final size:12
Alignment explanation
Indices: 67540--67585 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
67530 CAGCAATTTA
67540 TTCTTTTTCTTT
1 TTCTTTTTCTTT
67552 TTCTTTCTTCTTT
1 TTCTTT-TTCTTT
*
67565 TTCTTATTTTTTT
1 TTCTT-TTTCTTT
*
67578 TTATTTTT
1 TTCTTTTT
67586 TCAAGTGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 9 0.30
13 20 0.67
14 1 0.03
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (12 bp):
TTCTTTTTCTTT
Found at i:67584 original size:19 final size:19
Alignment explanation
Indices: 67543--67585 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
67533 CAATTTATTC
*
67543 TTTTTCTTTTTCTTTCTTC
1 TTTTTCTTTTTCTTTCTTA
*
67562 TTTTTCTTATTT-TTTTTTA
1 TTTTTCTT-TTTCTTTCTTA
67581 TTTTT
1 TTTTT
67586 TCAAGTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTTCTTTCTTA
Found at i:81635 original size:37 final size:36
Alignment explanation
Indices: 81586--81661 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
81576 ATTCCAAAAA
81586 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATTTTAATAGTATT-ATATT-AATTTAATAT
*
81622 TAATACTTATTTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATTTTAATAGTATTATATTAATTTAATAT
81659 TAA
1 TAA
81662 AGAGATTATC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 13 0.36
37 21 0.58
38 2 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (36 bp):
TAATATTATTTTAATAGTATTATATTAATTTAATAT
Found at i:81659 original size:11 final size:11
Alignment explanation
Indices: 81586--81661 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
81576 ATTCCAAAAA
*
81586 TAATATTATTT
1 TAATATTAATT
81597 TAATAGTTTAATAT
1 TAATA--TTAAT-T
81611 TAA-ATTTAATT
1 TAATA-TTAATT
*
81622 TAATACTTATTT
1 TAATA-TTAATT
*
81634 TAATAGT-ATT
1 TAATATTAATT
81644 T--TATTAATT
1 TAATATTAATT
81653 TAATATTAA
1 TAATATTAA
81662 AGAGATTATC
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 16 0.31
12 17 0.33
13 5 0.10
14 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:83206 original size:15 final size:15
Alignment explanation
Indices: 83188--83225 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
83178 ATATAGAGAC
83188 TATATAT-AT-TATA
1 TATATATAATCTATA
*
83201 TATATATAATCTCTA
1 TATATATAATCTATA
83216 TATATATAAT
1 TATATATAAT
83226 TTCCTCTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.32
14 2 0.09
15 13 0.59
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATATAATCTATA
Found at i:87101 original size:10 final size:11
Alignment explanation
Indices: 87062--87106 Score: 60
Period size: 10 Copynumber: 4.3 Consensus size: 11
87052 TGGCAATGCA
87062 TTTCTTTTCTT
1 TTTCTTTTCTT
87073 TTCTCTTTTC-T
1 TT-TCTTTTCTT
87084 TTT-TTTTCTT
1 TTTCTTTTCTT
87094 TTTC-TTTCTT
1 TTTCTTTTCTT
87104 TTT
1 TTT
87107 GTGATTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 5 0.16
10 14 0.45
11 5 0.16
12 7 0.23
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:87718 original size:17 final size:17
Alignment explanation
Indices: 87698--87742 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
87688 AGATAAACTA
*
87698 ACAAATAAAATGCAGTG
1 ACAAATAAAATGCAATG
*
87715 ACAAACAAAAATGCAATG
1 ACAAA-TAAAATGCAATG
*
87733 ACAACTAAAA
1 ACAAATAAAA
87743 AAAATGCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.60, C:0.16, G:0.11, T:0.13
Consensus pattern (17 bp):
ACAAATAAAATGCAATG
Found at i:87757 original size:19 final size:20
Alignment explanation
Indices: 87704--87759 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
87694 ACTAACAAAT
*
87704 AAAATGCA-GTGAC-AAACA
1 AAAATGCATGTAACTAAACA
*
87722 AAAATGCAATGACAACTAAA-A
1 AAAATGC-ATG-TAACTAAACA
87743 AAAATGCATGTAACTAA
1 AAAATGCATGTAACTAA
87760 CTACTGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 4 0.13
21 10 0.32
22 3 0.10
ACGTcount: A:0.57, C:0.14, G:0.12, T:0.16
Consensus pattern (20 bp):
AAAATGCATGTAACTAAACA
Found at i:90008 original size:14 final size:14
Alignment explanation
Indices: 89989--90023 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
89979 GTATAGAATT
89989 TAAAAG-GAAACAAA
1 TAAAAGTGAAA-AAA
90003 TAAAAGTGAAAAAA
1 TAAAAGTGAAAAAA
90017 TAAAAGT
1 TAAAAGT
90024 AAATGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.69, C:0.03, G:0.14, T:0.14
Consensus pattern (14 bp):
TAAAAGTGAAAAAA
Found at i:95442 original size:74 final size:74
Alignment explanation
Indices: 95321--95471 Score: 293
Period size: 74 Copynumber: 2.0 Consensus size: 74
95311 TTGAATTGAA
95321 CATTTGAAACATCACCGGTTTCAATTCAAAATTTCCAGCTTGTATAGCTAGCCTTACAACCCCTG
1 CATTTGAAACATCACCGGTTTCAATTCAAAATTTCCAGCTTGTATAGCTAGCCTTACAACCCCTG
95386 GTTGCAAAT
66 GTTGCAAAT
*
95395 CATTTGAAACATCACCGGTTTCAATTCAAAATTTCCAGCTTGTATAGCTGGCCTTACAACCCCTG
1 CATTTGAAACATCACCGGTTTCAATTCAAAATTTCCAGCTTGTATAGCTAGCCTTACAACCCCTG
95460 GTTGCAAAT
66 GTTGCAAAT
95469 CAT
1 CAT
95472 CAAGGACAGG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (74 bp):
CATTTGAAACATCACCGGTTTCAATTCAAAATTTCCAGCTTGTATAGCTAGCCTTACAACCCCTG
GTTGCAAAT
Found at i:111382 original size:46 final size:46
Alignment explanation
Indices: 111281--111386 Score: 117
Period size: 46 Copynumber: 2.3 Consensus size: 46
111271 TGCTTAGGTT
* * * * *
111281 CTCAGCTCTTGCATTTGTTGCAGATTAGTGAATACGGATTTAGTTT
1 CTCAGTTCTTGCATTTGTTGCAGATTAGAGAATACGAATTAAGTTC
* *
111327 TTCATTTCTTGCATTTGTTGCAGATT-GAAGAATACGAAATTAAGTTC
1 CTCAGTTCTTGCATTTGTTGCAGATTAG-AGAATACG-AATTAAGTTC
111374 CT-AGTTCTTGCAT
1 CTCAGTTCTTGCAT
111387 ACGTTGCGGA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.02
46 40 0.82
47 8 0.16
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (46 bp):
CTCAGTTCTTGCATTTGTTGCAGATTAGAGAATACGAATTAAGTTC
Found at i:112334 original size:20 final size:20
Alignment explanation
Indices: 112309--112378 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
112299 TTAGCATGGG
112309 ACTTCTACCGGTAGAACTTC
1 ACTTCTACCGGTAGAACTTC
112329 ACTTCTACCGGTAGAACTTC
1 ACTTCTACCGGTAGAACTTC
* *
112349 ACTTCTACCGATACAACTTC
1 ACTTCTACCGGTAGAACTTC
*
112369 AGTTCTACCG
1 ACTTCTACCG
112379 ATACCTTGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (20 bp):
ACTTCTACCGGTAGAACTTC
Found at i:112503 original size:293 final size:294
Alignment explanation
Indices: 112037--112662 Score: 850
Period size: 293 Copynumber: 2.1 Consensus size: 294
112027 TTGGCCTAGG
* *
112037 ACTTCTATCGGTAGAACTTCACTTCTA-GGATACAACTTCAGTTCTACCAATACCTTGAAGACTT
1 ACTTCTACCGGTAGAACTTCACTTCTACCGATACAACTTCAGTTCTACCAATACCTTGAAGACTT
* * ** *
112101 CTACCGAAACAAGTCAAGTCAATAGTCAACATTCAGCATCATCTACACTTCTACCGATACTCTGA
66 CTACCGAAACAAGTCAAGTCAATAGCCAAAATTCAGCATCATCTACACTAATAACGATACTCTGA
*
112166 TGGATTCTAACGATACATAATGAAACCCTCAGAGTTCCACCGATACAATAAAGCATCTACC-AAC
131 CGGATTCTAACGATACATAATGAAACCCTCAGAGTTCCACCGATACAATAAAGCATCTACCAAAC
*
112230 AACTCTAACGGTAATATTTTCTAAAGCCATCTACCGATACAAATATGCTTCTATCGAAACAAGCT
196 AACTCTAACGGTAATATTTTCTAAAGCCATCTACCGATACAAATACGCTTCTATCGAAACAAGCT
*
112295 AGTTTTAGCATGGGACTTCTACCGGTAGAACTTC
261 AGTTTTAGCATGGGACTTCTACCAGTAGAACTTC
*
112329 ACTTCTACCGGTAGAACTTCACTTCTACCGATACAACTTCAGTTCTACCGATACCTTGAAGACTT
1 ACTTCTACCGGTAGAACTTCACTTCTACCGATACAACTTCAGTTCTACCAATACCTTGAAGACTT
* * * * *
112394 CTATCGAAACAAGTCAAGTCAGTAGCCAAAATAT-AGCATCCTTTGCACTAATAACGATACTCTG
66 CTACCGAAACAAGTCAAGTCAATAGCCAAAAT-TCAGCATCATCTACACTAATAACGATACTCTG
* * * *
112458 AC-GAGTTTTATCGATACCA-AATGAAACCCTCAGAGTTCTACCGATACAATGAAGCATCTACCA
130 ACGGA-TTCTAACGATA-CATAATGAAACCCTCAGAGTTCCACCGATACAATAAAGCATCTACC-
* * * * *
112521 ATAGAACGACTCTAACGGTAATATTTTGTAAAGTCGTCTACCGATACAAGTACGCTTCTATCGAA
192 --A-AACAACTCTAACGGTAATATTTTCTAAAGCCATCTACCGATACAAATACGCTTCTATCGAA
* *
112586 ACAAGCTAGTTTTAGCCTGGGACTTCTATCAGTAGAACTTC
254 ACAAGCTAGTTTTAGCATGGGACTTCTACCAGTAGAACTTC
* * * * *
112627 TCTTCTACCGATACAACTTTC-GTTCTACCTATACAA
1 ACTTCTACCGGTAGAAC-TTCACTTCTACCGATACAA
112663 GTATGCTTTT
Statistics
Matches: 292, Mismatches: 32, Indels: 14
0.86 0.09 0.04
Matches are distributed among these distances:
292 28 0.10
293 138 0.47
294 3 0.01
298 120 0.41
299 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (294 bp):
ACTTCTACCGGTAGAACTTCACTTCTACCGATACAACTTCAGTTCTACCAATACCTTGAAGACTT
CTACCGAAACAAGTCAAGTCAATAGCCAAAATTCAGCATCATCTACACTAATAACGATACTCTGA
CGGATTCTAACGATACATAATGAAACCCTCAGAGTTCCACCGATACAATAAAGCATCTACCAAAC
AACTCTAACGGTAATATTTTCTAAAGCCATCTACCGATACAAATACGCTTCTATCGAAACAAGCT
AGTTTTAGCATGGGACTTCTACCAGTAGAACTTC
Found at i:119013 original size:32 final size:33
Alignment explanation
Indices: 118966--119028 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
118956 GAACAATTAT
* *
118966 ATTTTCTATCCTTCTATTTTTC-TACCACTTCA
1 ATTTTCCATCCTTCTAATTTTCATACCACTTCA
* *
118998 ATTTTCCATCTTTCTAATTTTCATTCCACTT
1 ATTTTCCATCCTTCTAATTTTCATACCACTT
119029 TACCAAGCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.19, C:0.27, G:0.00, T:0.54
Consensus pattern (33 bp):
ATTTTCCATCCTTCTAATTTTCATACCACTTCA
Found at i:129477 original size:55 final size:57
Alignment explanation
Indices: 129380--129489 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 57
129370 TCTTCATTTG
*
129380 CCATATGATGCCATATCAATACGACTAGGCCTTACACTATATGGACTTC-ACATACC
1 CCATATGATGCCATATCAATACGACTAGGCCTTACACAATATGGACTTCTACATACC
* *
129436 CCATATGATGCCATAGTC-CTA-GACTAGGTCC-TACACAATATGGTCTTCTACATA
1 CCATATGATGCCATA-TCAATACGACTAGG-CCTTACACAATATGGACTTCTACATA
129490 TCAAAACTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
55 22 0.46
56 24 0.50
57 2 0.04
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (57 bp):
CCATATGATGCCATATCAATACGACTAGGCCTTACACAATATGGACTTCTACATACC
Found at i:134088 original size:58 final size:58
Alignment explanation
Indices: 133992--134141 Score: 219
Period size: 58 Copynumber: 2.6 Consensus size: 58
133982 ACCTATGTTC
* * *
133992 TGATAAAATCTCACTTTGTTTACTCAATTCATTCAAAATGGAACAACTTAATTACAAT
1 TGATAAAATCTGACTTTGTCTACTCAATTCATTAAAAATGGAACAACTTAATTACAAT
* * * * *
134050 TTATACAATCTGACTTTGTCTACTCAATTCTTTAAAAATGGAACAACTTACTTACTAT
1 TGATAAAATCTGACTTTGTCTACTCAATTCATTAAAAATGGAACAACTTAATTACAAT
134108 TGATAAAATCTGACTTTTGTCTACTCAATTCATT
1 TGATAAAATCTGAC-TTTGTCTACTCAATTCATT
134142 CAAGATCCAA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
58 62 0.77
59 18 0.22
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.39
Consensus pattern (58 bp):
TGATAAAATCTGACTTTGTCTACTCAATTCATTAAAAATGGAACAACTTAATTACAAT
Found at i:137519 original size:24 final size:24
Alignment explanation
Indices: 137485--137543 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
137475 CTAGAACTAG
* *
137485 TGAAACA--CAAAGGTTTAGTGCT
1 TGAAACATTCAAAGCTTTAGGGCT
*
137507 T-AGAACATTCAAAGCTTTGGGGCT
1 TGA-AACATTCAAAGCTTTAGGGCT
137531 TGAAACATTCAAA
1 TGAAACATTCAAA
137544 ACTCTTGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
24 23 0.77
25 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.27
Consensus pattern (24 bp):
TGAAACATTCAAAGCTTTAGGGCT
Found at i:138697 original size:18 final size:17
Alignment explanation
Indices: 138645--138697 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
138635 AATTTTTTAT
138645 AATTTAAAATTTTAAAAA
1 AATTTAAAA-TTTAAAAA
* **
138663 AATATAATTTTTTAAAAA
1 AATTTAA-AATTTAAAAA
*
138681 AGTTTAAAATTTAAAAA
1 AATTTAAAATTTAAAAA
138698 TTATTAAAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AATTTAAAATTTAAAAA
Done.