Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013207.1 Kokia drynarioides strain JFW-HI SEQ_128226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2103
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40


Found at i:1384 original size:17 final size:17

Alignment explanation


    Indices: 1358--1390  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1348 ACAAATGAAT

                 *           
       1358 TTAAACTTAAAAAATAA
          1 TTAAAATTAAAAAATAA

                            
       1375 TTAAAATTAAAAAATA
          1 TTAAAATTAAAAAATA

       1391 TATTTTTTAG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30


Consensus pattern (17 bp):   
TTAAAATTAAAAAATAA
Done.