genome.fa.s13225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013225.1 Kokia drynarioides strain JFW-HI SEQ_128244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147328

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
885--921	16	2.2	16	90	9	56	81	0	0	18	0.70
885--921	5	7.6	5	82	17	51	81	0	0	18	0.70
2829--2875	23	2.0	23	100	0	94	36	12	25	25	1.92
4063--4096	16	2.2	15	94	5	59	23	14	17	44	1.86
9701--9730	15	1.9	16	93	6	53	46	6	6	40	1.56
9974--10008	18	1.9	18	88	0	52	65	0	2	31	1.07
9969--10032	29	2.2	31	83	13	82	60	1	1	35	1.15
11626--11685	12	5.0	12	85	0	84	38	13	16	31	1.87
11614--11685	24	3.0	24	91	4	92	40	12	16	30	1.86
11627--11685	24	2.5	24	100	0	118	37	13	16	32	1.88
18726--18768	18	2.4	18	80	0	50	44	18	6	30	1.76
20828--20882	18	3.2	17	78	12	60	50	0	0	49	1.00
20839--20890	15	3.3	15	75	8	50	55	0	0	44	0.99
24395--24419	2	12.5	2	100	0	50	48	0	0	52	1.00
24643--24668	2	13.0	2	100	0	52	50	0	0	50	1.00
29447--29550	29	3.6	29	78	10	106	37	2	22	37	1.69
29429--29559	29	4.4	29	72	15	83	36	3	22	38	1.70
29541--29605	28	2.4	28	81	2	78	29	3	32	35	1.73
29547--29603	27	2.1	27	87	6	80	29	1	29	38	1.67
29611--29764	30	5.1	30	80	9	154	36	0	23	40	1.55
29617--29778	60	2.7	61	81	9	199	37	0	25	37	1.56
36297--36354	30	1.9	30	96	0	107	43	15	3	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37044--37132	26	3.3	26	81	10	108	19	20	21	39	1.93
40497--40573	37	2.1	37	87	4	111	25	29	22	22	1.99
48388--48412	10	2.5	10	100	0	50	84	0	16	0	0.63
52244--52297	25	2.3	22	74	17	54	59	3	3	33	1.33
54746--54825	25	3.4	25	73	19	91	43	2	6	47	1.41
54730--54799	20	3.2	20	72	18	68	47	1	5	45	1.35
54730--54833	45	2.3	45	91	4	176	44	1	4	49	1.34
63862--63887	7	3.7	7	100	0	52	76	0	0	23	0.78
65104--65196	40	2.3	40	90	1	143	26	22	20	30	1.98
65142--65284	39	3.7	39	77	12	109	22	20	21	35	1.96
65142--65348	78	2.7	78	82	3	211	24	17	20	37	1.94
67681--67716	17	2.1	17	89	0	54	52	11	0	36	1.37
75321--75380	21	2.9	21	74	0	57	33	21	11	33	1.90
81624--81673	21	2.4	21	96	0	91	28	16	24	32	1.96
84586--84627	20	2.1	20	95	0	75	47	7	9	35	1.64
95971--96033	31	2.0	31	90	0	99	31	0	14	53	1.41
96745--96779	18	2.0	17	88	5	52	34	0	2	62	1.10
102282--102323	20	2.2	19	86	4	57	69	2	0	28	1.01
102724--102847	58	2.1	58	93	1	212	27	16	16	39	1.90
107059--107127	21	3.3	21	66	22	63	30	20	10	39	1.85
107080--107154	21	3.6	21	68	20	66	34	24	6	34	1.81
107058--107148	42	2.2	42	100	0	182	31	23	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107058--107175	42	2.8	42	89	5	141	32	24	7	35	1.84
107847--107937	18	5.1	18	82	7	105	31	25	18	24	1.97
107852--107937	35	2.4	36	86	1	120	33	24	19	22	1.97
116197--116357	82	2.0	82	97	0	304	25	32	5	36	1.79
122180--122207	11	2.5	11	100	0	56	17	21	32	28	1.96
122247--122283	19	1.9	19	94	0	65	62	0	2	35	1.10
122344--122394	26	2.0	26	88	0	75	25	23	27	23	2.00
122959--123003	20	2.3	19	84	3	54	26	2	2	68	1.12
122980--123030	27	1.9	27	84	4	68	21	1	3	72	1.11
123170--123212	18	2.4	18	88	0	68	46	2	0	51	1.13
123169--123254	42	2.0	41	87	12	122	44	3	1	51	1.26
124654--124718	8	7.2	9	75	11	53	40	0	1	58	1.07
131549--132066	146	3.4	147	81	8	505	43	2	9	44	1.52
131549--132066	155	3.4	153	79	9	537	43	2	9	44	1.52
133697--133722	13	2.0	13	100	0	52	30	0	0	69	0.89
134821--134913	46	2.0	46	95	0	168	36	15	12	35	1.85
136065--136098	16	2.1	17	88	5	52	44	14	0	41	1.45
136061--136180	58	2.1	58	92	3	197	47	20	0	32	1.50
141083--141147	30	2.1	31	82	5	78	67	7	1	23	1.25
141135--141240	8	12.0	8	74	19	61	64	9	0	26	1.24
141135--141240	20	6.0	16	70	18	61	64	9	0	26	1.24
141127--141237	9	12.2	9	72	12	50	65	9	0	24	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143780--143835	29	1.9	29	85	0	76	39	16	16	28	1.89

Tables:   1

The End!