Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013226.1 Kokia drynarioides strain JFW-HI SEQ_128245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9495
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:5838 original size:5 final size:5

Alignment explanation


    Indices: 5828--5861  Score: 50
    Period size: 5  Copynumber: 6.6  Consensus size: 5

       5818 TTCCAAATAT

                                 *                  
       5828 ATAAA ATAAA ATAAA ATTGAA ATAAA ATAAA ATA
          1 ATAAA ATAAA ATAAA A-TAAA ATAAA ATAAA ATA

       5862 TATGTAAAAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
   5   22  0.85
   6    4  0.15

ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24


Consensus pattern (5 bp):   
ATAAA
Done.