Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013236.1 Kokia drynarioides strain JFW-HI SEQ_128255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  477469

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
329548--329714
88
1.9
87
81
12
200
37
23
0
37
1.60
329725--329827
29
3.6
28
78
11
86
38
25
4
31
1.77
331577--331627
14
3.4
15
77
20
52
58
9
9
21
1.58
331882--331931
13
3.9
12
80
12
55
66
2
14
18
1.35
331859--331937
25
3.2
24
80
16
74
64
1
12
21
1.34
336484--336530
24
2.0
24
87
4
69
19
23
6
51
1.70
336814--336869
26
2.2
26
83
6
69
7
33
1
57
1.37
337197--337224
9
3.1
9
100
0
56
46
21
0
32
1.52
367115--367152
20
1.9
20
88
0
58
5
5
2
86
0.76
369544--369568
5
5.0
5
100
0
50
20
0
0
80
0.72
370626--370857
116
2.0
116
97
0
437
31
22
15
30
1.95
373317--373342
5
5.2
5
100
0
52
38
61
0
0
0.96
380167--380205
15
2.6
15
83
0
51
23
5
0
71
1.05
380410--380468
18
3.5
17
69
17
52
62
1
0
35
1.05
380471--380507
2
18.5
2
94
0
65
51
0
0
48
1.00
385404--385444
2
20.5
2
100
0
82
51
0
0
48
1.00
399339--399375
17
2.2
17
90
9
58
81
0
13
5
0.86
399338--399379
16
2.7
15
85
7
57
80
0
14
4
0.86
399463--399487
6
4.2
6
100
0
50
84
0
16
0
0.63
399498--399550
18
2.9
18
85
0
61
43
3
0
52
1.19
402493--402534
21
2.0
21
86
13
59
9
11
11
66
1.44
402785--402810
11
2.4
11
100
0
52
50
0
7
42
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
404622--404709
24
3.9
23
64
31
55
42
17
26
14
1.87
407104--407249
78
1.9
78
81
7
179
43
1
5
49
1.34
407514--407590
39
2.0
40
89
2
120
31
16
20
31
1.95
415498--415564
29
2.2
28
82
15
73
70
4
2
22
1.19
415710--415734
4
6.2
4
100
0
50
76
0
0
24
0.80
415807--415842
16
2.4
15
86
13
56
75
16
0
8
1.04
417347--417544
50
3.9
51
77
3
141
24
21
16
37
1.93
417367--418003
100
6.4
100
81
0
639
23
23
17
36
1.94
417367--418037
50
13.5
50
79
0
556
22
23
16
36
1.94
417367--418037
150
4.5
150
81
3
697
22
23
16
36
1.94
418410--418450
15
2.7
15
80
0
55
34
14
31
19
1.92
418498--418568
30
2.4
30
90
0
115
28
19
25
26
1.99
423283--423343
24
2.5
24
86
0
77
21
22
24
31
1.98
430430--430486
30
1.9
30
88
0
87
31
17
24
26
1.97
430433--430500
30
2.3
30
78
0
73
36
19
22
22
1.95
432499--432711
109
2.0
109
86
5
306
32
12
15
39
1.84
434456--434498
11
4.1
11
88
5
54
76
0
6
16
0.99
443430--443480
22
2.3
23
86
10
70
50
0
5
43
1.26
451691--451729
18
2.1
19
85
9
53
30
2
0
66
1.05
452704--452834
59
2.2
59
85
6
167
38
16
5
38
1.72
452701--452834
30
4.5
28
76
13
119
40
16
5
38
1.71
452734--452840
30
3.6
28
80
8
124
40
16
4
38
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
452904--452949
16
2.8
17
84
15
62
21
0
10
67
1.21
454860--454931
31
2.3
31
92
0
117
26
19
11
43
1.84
459709--459858
49
3.1
48
78
7
158
30
16
30
23
1.96
460138--460787
79
8.2
77
82
6
691
32
24
17
25
1.97
460138--460787
158
4.1
157
85
3
765
32
24
17
25
1.97
460138--460787
237
2.7
236
86
2
856
32
24
17
25
1.97
461214--461326
56
2.0
56
96
0
208
38
13
32
15
1.87
462423--462638
30
7.3
30
74
12
151
37
21
6
35
1.78
462423--462638
59
3.6
58
79
10
226
37
21
6
35
1.78
463640--463689
20
2.5
20
86
0
64
50
12
8
30
1.68
468223--468516
109
2.7
109
81
0
354
26
18
25
29
1.98

Tables:   1   2

The End!