Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013237.1 Kokia drynarioides strain JFW-HI SEQ_128256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3373
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:682 original size:17 final size:17

Alignment explanation


    Indices: 657--739  Score: 87
    Period size: 17  Copynumber: 4.9  Consensus size: 17

        647 TTTGGACATT

                *            
        657 TAAAATTAAATTTATAA
          1 TAAATTTAAATTTATAA

                             *
        674 TAAATTTAAATTT-TAGC
          1 TAAATTTAAATTTATA-A

                             
        691 TAAATTTAAATTTATAA
          1 TAAATTTAAATTTATAA

                * *  *    *  
        708 TAAACTCAATTTTAAAA
          1 TAAATTTAAATTTATAA

                     *     
        725 TAAATTTAAGTTTAT
          1 TAAATTTAAATTTAT

        740 TGGGCCCAGA


Statistics
Matches: 53,  Mismatches: 11, Indels: 4
        0.78            0.16        0.06

Matches are distributed among these distances:
  16    2  0.04
  17   49  0.92
  18    2  0.04

ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45


Consensus pattern (17 bp):   
TAAATTTAAATTTATAA

Found at i:729 original size:34 final size:34

Alignment explanation


    Indices: 657--739  Score: 96
    Period size: 34  Copynumber: 2.4  Consensus size: 34

        647 TTTGGACATT

                *                 *         **
        657 TAAAATTAAATTTATAATAAATTTAAATTTTAGC
          1 TAAATTTAAATTTATAATAAATCTAAATTTTAAA

                                    *          
        691 TAAATTTAAATTTATAATAAA-CTCAATTTTAAAA
          1 TAAATTTAAATTTATAATAAATCTAAATTTT-AAA

                     *     
        725 TAAATTTAAGTTTAT
          1 TAAATTTAAATTTAT

        740 TGGGCCCAGA


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  33    7  0.17
  34   35  0.83

ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45


Consensus pattern (34 bp):   
TAAATTTAAATTTATAATAAATCTAAATTTTAAA
Done.