Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001324.1 Kokia drynarioides strain JFW-HI SEQ_112757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:816 original size:21 final size:22

Alignment explanation


    Indices: 757--818  Score: 56
    Period size: 21  Copynumber: 2.8  Consensus size: 22

        747 TTTTGTAGCC

                        *         
        757 TCTTTTTCTTGCGTT-TTCTTT
          1 TCTTTTTCTTGCCTTATTCTTT

            *            *           
        778 CCTTCTTCTCCTTACCTTATT-TTT
          1 TCTT-TT-T-CTTGCCTTATTCTTT

                             
        802 TCTTTTTCTTGCCTTAT
          1 TCTTTTTCTTGCCTTAT

        819 CGCCTCCGCA


Statistics
Matches: 32,  Mismatches: 5, Indels: 8
        0.71            0.11        0.18

Matches are distributed among these distances:
  21   12  0.38
  22    3  0.09
  23    3  0.09
  24   12  0.38
  25    2  0.06

ACGTcount: A:0.05, C:0.26, G:0.05, T:0.65


Consensus pattern (22 bp):   
TCTTTTTCTTGCCTTATTCTTT
Done.