genome.fa.s13246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013246.1 Kokia drynarioides strain JFW-HI SEQ_128266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187248

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2359--2403	22	2.0	22	100	0	90	35	13	24	26	1.92
4361--4444	28	3.0	28	80	1	98	35	8	5	50	1.57
4368--4453	28	3.2	28	77	11	72	39	10	5	44	1.63
4435--4504	28	2.5	28	85	0	95	35	11	4	48	1.59
4454--5572	28	39.6	27	77	11	802	34	13	3	48	1.58
4454--5553	84	13.0	83	79	9	951	34	13	3	49	1.58
4683--4807	64	2.0	63	81	10	148	38	9	3	48	1.52
5403--5469	33	2.0	33	91	0	107	28	14	2	53	1.56
5563--5704	27	5.3	27	75	5	135	31	15	3	49	1.62
9760--9817	29	2.0	29	93	0	98	25	22	17	34	1.96
16153--16192	8	4.7	9	80	20	50	65	0	35	0	0.93
17356--17415	29	2.0	31	83	6	79	38	0	0	61	0.96
20404--20449	22	2.1	22	100	0	92	30	13	32	23	1.93
23484--23528	24	1.9	23	81	4	54	60	13	11	15	1.60
27910--28113	98	2.1	98	99	0	401	34	18	17	30	1.93
38721--38770	12	3.6	14	74	15	50	50	0	0	50	1.00
38787--38891	35	3.1	35	84	13	148	17	40	0	42	1.49
38787--38891	32	3.2	33	79	11	126	17	40	0	42	1.49
58305--58341	16	2.3	17	81	13	51	45	0	0	54	1.00
62862--62908	19	2.5	19	96	0	85	27	10	8	53	1.64
66244--66300	28	2.0	28	100	0	114	33	28	17	21	1.96
66336--66373	3	12.7	3	88	0	58	60	0	39	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69871--70108	52	4.6	52	86	1	300	25	15	24	34	1.94
70773--70848	21	3.6	21	78	3	82	27	14	26	31	1.95
71778--71838	28	2.2	28	100	0	122	13	32	14	39	1.85
75779--75843	29	2.2	29	100	0	130	43	23	6	27	1.77
76612--76660	18	2.6	19	78	12	57	57	4	2	36	1.30
81724--81773	22	2.3	22	82	0	64	12	14	24	50	1.76
88415--88454	16	2.5	16	87	0	53	32	0	30	37	1.58
88590--88640	25	1.9	28	88	11	81	41	0	9	49	1.36
88615--88744	58	2.2	57	85	5	172	50	1	1	46	1.20
90079--90118	13	2.8	13	85	14	53	22	0	5	72	1.04
93684--93727	18	2.6	17	85	7	54	68	2	0	29	1.02
94807--94847	20	2.0	20	85	0	55	60	0	2	36	1.10
95316--95397	27	3.0	27	92	3	130	34	20	32	12	1.90
106980--107167	45	4.2	45	90	1	252	24	9	48	17	1.76
106966--107086	45	2.4	53	69	22	123	20	9	51	18	1.74
107119--107236	36	3.3	36	90	0	182	27	6	46	19	1.75
114589--114633	21	2.1	21	100	0	90	24	8	31	35	1.86
122864--122906	19	2.3	19	84	4	61	58	6	0	34	1.25
122863--122913	19	2.6	19	81	9	59	58	9	0	31	1.30
123049--123093	2	22.5	2	100	0	90	51	0	0	48	1.00
131158--131193	17	2.1	18	89	5	56	41	2	2	52	1.30
135006--135094	30	3.0	30	89	0	142	22	4	11	61	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142046--142086	2	20.5	2	94	0	73	51	0	0	48	1.00
142798--142859	32	1.9	32	83	6	81	67	1	1	29	1.09
142800--142868	32	2.2	30	82	12	77	65	2	1	30	1.16
155840--155898	28	2.1	28	87	0	82	45	10	20	23	1.81
161605--161804	80	2.5	80	100	0	400	39	22	13	26	1.90
161989--162033	15	3.1	15	74	6	56	46	0	0	53	1.00
161969--162042	29	2.5	30	91	2	123	48	1	0	50	1.09
174773--174811	4	9.5	4	94	5	69	23	0	53	23	1.46
184866--184924	24	2.4	23	78	10	64	30	0	0	69	0.89
184876--184927	27	1.9	27	84	7	70	32	0	0	67	0.91
184866--184926	25	2.4	25	81	10	72	31	0	0	68	0.89
185274--185315	18	2.3	18	84	15	52	54	2	0	42	1.13

Tables:   1

The End!