Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013248.1 Kokia drynarioides strain JFW-HI SEQ_128268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 127113
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Warning! 20 characters in sequence are not A, C, G, or T
Found at i:612 original size:59 final size:59
Alignment explanation
Indices: 483--1120 Score: 842
Period size: 59 Copynumber: 10.9 Consensus size: 59
473 GAGGTCACTA
* * * * *
483 AACCTTCTAAAAATTACTATTTTACCCCCGAACTT-CGAAAATCCCATTTTTAACCCCA
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
*
541 AATCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* * *
600 AACCTTCTAAAAATTATCATTTTACCCCCGAACTCCCAAAAATCCCATTTTTAGCCCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* **
659 AACCTT-CAAAAATTTACCATTTTACCCCCGAACTCCCAAAAATCCCATTTTTAGCCTTG
1 AACCTTCCAAAAA-TTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* ** *
718 AACCTTCTAAAAATTAATATTTTACCCTCGAACTTCCAAAAATCCCATTTTT-GACCCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAG-CCCCG
* * * *
777 AACCTTCCAAAAATTACCATTTTACCCCCAAACTCCCAAAAATCCCATTTTTAGACTCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* * *
836 AACCTTCCAAAAATTACCATTTTACCCTCGAACTCCCAAAAATCCCATTTTTAGCCCTG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* * * * *
895 AACTTTCC-AAAATTACCATTTTACCCCCTAACTTTCAAAAATCCCATTTTTAACCCTG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* *
953 AATCTTCCAAAAATTACCATTTTACCCCTC-AACTTCAAAAAATCCCATTTTTTA-CCCCG
1 AACCTTCCAAAAATTACCATTTTACCCC-CGAACTTCCAAAAATCCCA-TTTTTAGCCCCG
* ** **
1012 AATCTTCC-AAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTT-GATCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
* * *
1069 AACCTTTCGAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTT
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTT
1121 GATTCTGAAC
Statistics
Matches: 515, Mismatches: 54, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
57 14 0.03
58 164 0.32
59 324 0.63
60 13 0.03
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.31
Consensus pattern (59 bp):
AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAGCCCCG
Found at i:3509 original size:20 final size:20
Alignment explanation
Indices: 3473--3522 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
3463 TCATTAAGCT
*
3473 TTAATTAATCACTTTTA-ATC
1 TTAATTAAACACTTTTACA-C
3493 TTAATTAAAC-CTATTTACAC
1 TTAATTAAACACT-TTTACAC
3513 TTAATATAAA
1 TTAAT-TAAA
3523 TCATGCTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 19 0.73
21 5 0.19
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATTAAACACTTTTACAC
Found at i:8293 original size:20 final size:20
Alignment explanation
Indices: 8257--8306 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
8247 TCATTAAGCT
*
8257 TTAATTAATCACTTTTA-ATC
1 TTAATTAAACACTTTTACA-C
8277 TTAATTAAAC-CTATTTACAC
1 TTAATTAAACACT-TTTACAC
8297 TTAATATAAA
1 TTAAT-TAAA
8307 TCATGCTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 19 0.73
21 5 0.19
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATTAAACACTTTTACAC
Found at i:13109 original size:18 final size:18
Alignment explanation
Indices: 13086--13122 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
13076 ATTCACATAC
*
13086 TAATCAAATGCAATCACA
1 TAATCAAATGCAACCACA
*
13104 TAATCAGATGCAACCACA
1 TAATCAAATGCAACCACA
13122 T
1 T
13123 GCTCGAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.08, T:0.22
Consensus pattern (18 bp):
TAATCAAATGCAACCACA
Found at i:19182 original size:19 final size:19
Alignment explanation
Indices: 19158--19194 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
19148 GTGATAAAGA
19158 AGAGAAGGAAG-AAGAGAAG
1 AGAGAA-GAAGCAAGAGAAG
19177 AGAGAAGAAGCAAGAGAA
1 AGAGAAGAAGCAAGAGAA
19195 AAAGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.59, C:0.03, G:0.38, T:0.00
Consensus pattern (19 bp):
AGAGAAGAAGCAAGAGAAG
Found at i:19183 original size:15 final size:17
Alignment explanation
Indices: 19155--19194 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
19145 TGGGTGATAA
19155 AGAAGAGAAGGAAGAAG
1 AGAAGAGAAGGAAGAAG
*
19172 AGAAGAGAGAAGAAGCAAG
1 AGAAGAGA-AGGAAG-AAG
19191 AGAA
1 AGAA
19195 AAAGAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.60, C:0.03, G:0.38, T:0.00
Consensus pattern (17 bp):
AGAAGAGAAGGAAGAAG
Found at i:25613 original size:21 final size:21
Alignment explanation
Indices: 25566--25625 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
25556 AATAGTGCAG
* *
25566 ACTTCTACCAATACAAGTGGC
1 ACTTCTACCGATACAAGTGAC
*
25587 AGTTCTACCGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
* *
25608 TCTTCTACCGAAACAAGT
1 ACTTCTACCGATACAAGT
25626 CTTACTTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (21 bp):
ACTTCTACCGATACAAGTGAC
Found at i:28273 original size:37 final size:37
Alignment explanation
Indices: 28213--28357 Score: 132
Period size: 37 Copynumber: 3.9 Consensus size: 37
28203 TCGTTCTTGG
* * *
28213 ATCACCGACACAAAGCCTGCTAGGCACATAGCC-CAA
1 ATCACTGACACGAAGCCTACTAGGCACATAGCCTCAA
* *
28249 TTACACTGACACGAAGCCTACTAGGCACATAGCCTGAA
1 AT-CACTGACACGAAGCCTACTAGGCACATAGCCTCAA
* * *
28287 ATCACT-AGCATGAAGCCTACTAGGCACACAGCCTGAA
1 ATCACTGA-CACGAAGCCTACTAGGCACATAGCCTCAA
* * * * * *
28324 AACACCGGCATGAAGCCTACTAGGAACAAAGCCT
1 ATCACTGACACGAAGCCTACTAGGCACATAGCCT
28358 GAAAACACCG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
36 2 0.02
37 87 0.95
38 3 0.03
ACGTcount: A:0.36, C:0.31, G:0.19, T:0.14
Consensus pattern (37 bp):
ATCACTGACACGAAGCCTACTAGGCACATAGCCTCAA
Found at i:28358 original size:37 final size:37
Alignment explanation
Indices: 28258--28431 Score: 213
Period size: 37 Copynumber: 4.7 Consensus size: 37
28248 ATTACACTGA
* * **
28258 CACGAAGCCTACTAGGCACATAGCCTGAAATCACTAG
1 CACGAAGCCTACTAGGCACAAAGCCTGAAAACACCGG
* *
28295 CATGAAGCCTACTAGGCACACAGCCTGAAAACACCGG
1 CACGAAGCCTACTAGGCACAAAGCCTGAAAACACCGG
* *
28332 CATGAAGCCTACTAGGAACAAAGCCTGAAAACACCGG
1 CACGAAGCCTACTAGGCACAAAGCCTGAAAACACCGG
* * * * *
28369 CACAAATCCTACTACGCTCAAAGTCTGAAAACACCGG
1 CACGAAGCCTACTAGGCACAAAGCCTGAAAACACCGG
* *
28406 CACGAAGCCTACTAAGCATAAAGCCT
1 CACGAAGCCTACTAGGCACAAAGCCT
28432 AAATTTTTAG
Statistics
Matches: 117, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 117 1.00
ACGTcount: A:0.37, C:0.30, G:0.18, T:0.14
Consensus pattern (37 bp):
CACGAAGCCTACTAGGCACAAAGCCTGAAAACACCGG
Found at i:30026 original size:20 final size:20
Alignment explanation
Indices: 29990--30039 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
29980 TCATTAAGCT
*
29990 TTAATTAATCACTTTTA-ATC
1 TTAATTAAACACTTTTACA-C
30010 TTAATTAAAC-CTATTTACAC
1 TTAATTAAACACT-TTTACAC
30030 TTAATATAAA
1 TTAAT-TAAA
30040 TCATGCTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 19 0.73
21 5 0.19
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATTAAACACTTTTACAC
Found at i:34512 original size:3 final size:3
Alignment explanation
Indices: 34504--34530 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
34494 TTGGAGAGGA
34504 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
34531 CTAGTAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:35428 original size:26 final size:27
Alignment explanation
Indices: 35392--35465 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 27
35382 TTATGTTATG
*
35392 AATTAACTAAATTGATTTATATATG-AT
1 AATTAGCTAAATTGATTTATAT-TGCAT
* *
35419 AATTAG-TAAATTGAATTAAATTGCAT
1 AATTAGCTAAATTGATTTATATTGCAT
*
35445 TATTAGCTAAATTGATCTTAT
1 AATTAGCTAAATTGAT-TTAT
35466 GTTTTATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.05
26 20 0.53
27 13 0.34
28 3 0.08
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.43
Consensus pattern (27 bp):
AATTAGCTAAATTGATTTATATTGCAT
Found at i:35729 original size:24 final size:24
Alignment explanation
Indices: 35693--35759 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
35683 TTTATCTGAA
** *
35693 TAGCTGGTTAGCGTAAACGCATAT
1 TAGCTGGCAAGCGTAAACGCATAC
*
35717 TAGCTGGCGAGCGTAAACGCATAC
1 TAGCTGGCAAGCGTAAACGCATAC
35741 TAGCTGGCAAGCGTAAACG
1 TAGCTGGCAAGCGTAAACG
35760 TAAAGTGGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (24 bp):
TAGCTGGCAAGCGTAAACGCATAC
Found at i:35770 original size:24 final size:24
Alignment explanation
Indices: 35754--35834 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
35744 CTGGCAAGCG
35754 TAAACGTAAAGTGGCTGACGAGCA
1 TAAACGTAAAGTGGCTGACGAGCA
* *
35778 TAAATGTAAAGTGGATGACGAGCA
1 TAAACGTAAAGTGGCTGACGAGCA
* *
35802 TAAACGTATAGTGGCTGATGAGCA
1 TAAACGTAAAGTGGCTGACGAGCA
35826 TAAACGTAA
1 TAAACGTAA
35835 TTGAAACTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (24 bp):
TAAACGTAAAGTGGCTGACGAGCA
Found at i:41828 original size:32 final size:32
Alignment explanation
Indices: 41792--41855 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
41782 TATAATTTTT
41792 TAAAAAATAAAAA-CTATTTAAAAATATAAAAA
1 TAAAAAATAAAAAGCT-TTTAAAAATATAAAAA
*
41824 TAAAAAATAAAAAGCTTTTGAAAATATAAAAA
1 TAAAAAATAAAAAGCTTTTAAAAATATAAAAA
41856 AATTCCCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 28 0.93
33 2 0.07
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (32 bp):
TAAAAAATAAAAAGCTTTTAAAAATATAAAAA
Found at i:42297 original size:13 final size:13
Alignment explanation
Indices: 42279--42307 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
42269 AATTTTTATA
42279 TTTTAAAAATATT
1 TTTTAAAAATATT
42292 TTTTAAAAATATT
1 TTTTAAAAATATT
42305 TTT
1 TTT
42308 AAATTTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTTAAAAATATT
Found at i:42863 original size:18 final size:18
Alignment explanation
Indices: 42818--42865 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
42808 AAACATTGAA
42818 TTTTGAATTTTTTTATAT
1 TTTTGAATTTTTTTATAT
*
42836 TTTTAAAATTGTTTTTAT-T
1 TTTT-GAATT-TTTTTATAT
42855 TTTTGAATTTT
1 TTTTGAATTTT
42866 AAAGAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.08
18 8 0.31
19 9 0.35
20 7 0.27
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTTTGAATTTTTTTATAT
Found at i:42907 original size:19 final size:21
Alignment explanation
Indices: 42870--42912 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
42860 AATTTTAAAG
42870 AATTTTTATTTTTTAAAATAT
1 AATTTTTATTTTTTAAAATAT
42891 AATTTTTA-TTTTTAAATATAT
1 AATTTTTATTTTTTAAA-ATAT
42912 A
1 A
42913 TATATTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
AATTTTTATTTTTTAAAATAT
Found at i:44391 original size:15 final size:15
Alignment explanation
Indices: 44371--44401 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
44361 AAAATCAATC
44371 GCGTATGAATTTCGT
1 GCGTATGAATTTCGT
44386 GCGTATGAATTTCGT
1 GCGTATGAATTTCGT
44401 G
1 G
44402 TAATTTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.29, T:0.39
Consensus pattern (15 bp):
GCGTATGAATTTCGT
Found at i:44790 original size:12 final size:12
Alignment explanation
Indices: 44771--44810 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
44761 TCGTAGAGCC
44771 AGAGAGATAGAG
1 AGAGAGATAGAG
*
44783 ATAGAGATAGAG
1 AGAGAGATAGAG
*
44795 AGAGAGAGAGAG
1 AGAGAGATAGAG
44807 AGAG
1 AGAG
44811 GTGATTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.07
Consensus pattern (12 bp):
AGAGAGATAGAG
Found at i:44796 original size:2 final size:2
Alignment explanation
Indices: 44771--44810 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
44761 TCGTAGAGCC
* * *
44771 AG AG AG AT AG AG AT AG AG AT AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
44811 GTGATTGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.07
Consensus pattern (2 bp):
AG
Found at i:55030 original size:22 final size:21
Alignment explanation
Indices: 55005--55053 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
54995 GGATATCGTG
*
55005 ATACCCTCCACTGAGTA-TCGCA
1 ATACCC-CCACTAAGTACT-GCA
55027 ATACTCCCCACTAAGTACTGCA
1 ATAC-CCCCACTAAGTACTGCA
55049 ATACC
1 ATACC
55054 TCTATCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 20 0.83
23 3 0.12
ACGTcount: A:0.31, C:0.37, G:0.10, T:0.22
Consensus pattern (21 bp):
ATACCCCCACTAAGTACTGCA
Found at i:60441 original size:38 final size:37
Alignment explanation
Indices: 60398--60540 Score: 121
Period size: 37 Copynumber: 3.9 Consensus size: 37
60388 ACAAAGCTTG
*
60398 CTAGGCACATAGCCCAATAACACTGGCACGAAGGCCTG
1 CTAGGCACATAGCCCAATAACACTGGCACGAA-GCCTA
* * * * * *
60436 TTAGGCATAAAGCCCGATATCAC-GAGCATGAAGCCTA
1 CTAGGCACATAGCCCAATAACACTG-GCACGAAGCCTA
* * * *
60473 CTAGG--CATGGCTCGATAACACTGGCACGAAACCTA
1 CTAGGCACATAGCCCAATAACACTGGCACGAAGCCTA
* * *
60508 CTAGGCACATAGCCCAATATCACCGACACGAAG
1 CTAGGCACATAGCCCAATAACACTGGCACGAAG
60541 GCTTGCTAGG
Statistics
Matches: 79, Mismatches: 22, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
35 26 0.33
36 1 0.01
37 28 0.35
38 24 0.30
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.15
Consensus pattern (37 bp):
CTAGGCACATAGCCCAATAACACTGGCACGAAGCCTA
Found at i:60551 original size:38 final size:37
Alignment explanation
Indices: 60391--60552 Score: 105
Period size: 38 Copynumber: 4.4 Consensus size: 37
60381 CATCGGCACA
* * *
60391 AAGCTTGCTAGGCACATAGCCCAATAACACTGGCACG
1 AAGCCTGCTAGGCACATAGCCCAATAACACCGACACG
* * * * * *
60428 AAGGCCTGTTAGGCATAAAGCCCGATATCA-CGAGCATG
1 AA-GCCTGCTAGGCACATAGCCCAATAACACCGA-CACG
* * * * * *
60466 AAGCCTACTAGG--CATGGCTCGATAACACTGGCACG
1 AAGCCTGCTAGGCACATAGCCCAATAACACCGACACG
* * *
60501 AAACCTACTAGGCACATAGCCCAATATCACCGACACG
1 AAGCCTGCTAGGCACATAGCCCAATAACACCGACACG
*
60538 AAGGCTTGCTAGGCA
1 AA-GCCTGCTAGGCA
60553 TAAAGCCTGA
Statistics
Matches: 90, Mismatches: 29, Indels: 11
0.69 0.22 0.08
Matches are distributed among these distances:
35 24 0.27
36 1 0.01
37 30 0.33
38 35 0.39
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.17
Consensus pattern (37 bp):
AAGCCTGCTAGGCACATAGCCCAATAACACCGACACG
Found at i:67347 original size:38 final size:38
Alignment explanation
Indices: 67296--67563 Score: 265
Period size: 38 Copynumber: 7.1 Consensus size: 38
67286 CCGACACAAA
**
67296 GCCTACTAGGCACATAGCCCGATAACACCGGCATAAAG
1 GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
* * *
67334 GCCTACTAGGCACATAGTCCGATAACACCAGCATGAAG
1 GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
* * * * * *
67372 G-CTAGCTACGCATAAAGCTCGATATCACCGGCAC-AAA
1 GCCTA-CTAGGCACATAGCCCGATAACACCGGCACGAAG
* * * *
67409 TCCTGCAAGGCACATAGCCCGATAACACCAGCACGAAG
1 GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
**
67447 GCCTACTAGGCACATAGATCGATAACACCGGCACGAAG
1 GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
* * * * *
67485 G-CTAGCTAGGCATAAAGCCCGATATCATCGACACGAA-
1 GCCTA-CTAGGCACATAGCCCGATAACACCGGCACGAAG
* * *
67522 GCTTGCTAGGCACATAGCCCGATAACACCGACACGAAG
1 GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
67560 GCCT
1 GCCT
67564 GTTAGGCGTA
Statistics
Matches: 182, Mismatches: 42, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
37 59 0.32
38 123 0.68
ACGTcount: A:0.34, C:0.31, G:0.22, T:0.14
Consensus pattern (38 bp):
GCCTACTAGGCACATAGCCCGATAACACCGGCACGAAG
Found at i:67439 original size:75 final size:75
Alignment explanation
Indices: 67296--67480 Score: 210
Period size: 75 Copynumber: 2.5 Consensus size: 75
67286 CCGACACAAA
* * ** * * * * *
67296 GCCTACTAGGCACATAGCCCGATAACACCGGCATAAAGGCCTACTAGGCACATAGTCCGATAACA
1 GCCTACTACGCACAAAGATCGATAACACCGGCACAAA-TCCTGCAAGGCACATAGCCCGATAACA
*
67361 CCAGCATGAAG
65 CCAGCACGAAG
* * *
67372 G-CTAGCTACGCATAAAGCTCGATATCACCGGCACAAATCCTGCAAGGCACATAGCCCGATAACA
1 GCCTA-CTACGCACAAAGATCGATAACACCGGCACAAATCCTGCAAGGCACATAGCCCGATAACA
67436 CCAGCACGAAG
65 CCAGCACGAAG
* *
67447 GCCTACTAGGCACATAGATCGATAACACCGGCAC
1 GCCTACTACGCACAAAGATCGATAACACCGGCAC
67481 GAAGGCTAGC
Statistics
Matches: 91, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
75 61 0.67
76 30 0.33
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (75 bp):
GCCTACTACGCACAAAGATCGATAACACCGGCACAAATCCTGCAAGGCACATAGCCCGATAACAC
CAGCACGAAG
Found at i:67570 original size:113 final size:113
Alignment explanation
Indices: 67285--67563 Score: 400
Period size: 113 Copynumber: 2.5 Consensus size: 113
67275 CTCGATGAAT
* * **
67285 ACCGACACAAAGCCTACTAGGCACATAGCCCGATAACACCGGCATAAAGGCCTACTAGGCACATA
1 ACCGACACAAAGCCTGCTAGGCACATAGCCCGATAACACCGACACGAAGGCCTACTAGGCACATA
* *
67350 GTCCGATAACACCAGCATGAAGGCTAGCTACGCATAAAGCTCGATATC
66 GTCCGATAACACCAGCACGAAGGCTAGCTACGCATAAAGCCCGATATC
* * *
67398 ACCGGCACAAATCCTGCAAGGCACATAGCCCGATAACACC-AGCACGAAGGCCTACTAGGCACAT
1 ACCGACACAAAGCCTGCTAGGCACATAGCCCGATAACACCGA-CACGAAGGCCTACTAGGCACAT
* *
67462 AGAT-CGATAACACCGGCACGAAGGCTAGCTAGGCATAAAGCCCGATATC
65 AG-TCCGATAACACCAGCACGAAGGCTAGCTACGCATAAAGCCCGATATC
* * *
67511 ATCGACACGAAGCTTGCTAGGCACATAGCCCGATAACACCGACACGAAGGCCT
1 ACCGACACAAAGCCTGCTAGGCACATAGCCCGATAACACCGACACGAAGGCCT
67564 GTTAGGCGTA
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
113 144 0.99
114 2 0.01
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (113 bp):
ACCGACACAAAGCCTGCTAGGCACATAGCCCGATAACACCGACACGAAGGCCTACTAGGCACATA
GTCCGATAACACCAGCACGAAGGCTAGCTACGCATAAAGCCCGATATC
Found at i:67579 original size:38 final size:38
Alignment explanation
Indices: 67285--67589 Score: 219
Period size: 38 Copynumber: 8.1 Consensus size: 38
67275 CTCGATGAAT
* * *
67285 ACCGACAC-AAAGCCTACTAGGCACATAGCCCGATAAC
1 ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
* ** * * *
67322 ACCGGCATAAAGGCCTACTAGGCACATAGTCCGATAAC
1 ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
* * * * *
67360 ACC-AGCATGAAGG-CTAGCTACGCATAAAGCTCGATATC
1 ACCGA-CACGAAGGCCT-GCTAGGCACAAAGCCCGATAAC
* ** * *
67398 ACCGGCAC-AAATCCTGCAAGGCACATAGCCCGATAAC
1 ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
* * **
67435 ACC-AGCACGAAGGCCTACTAGGCACATAGATCGATAAC
1 ACCGA-CACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
* * *
67473 ACCGGCACGAAGG-CTAGCTAGGCATAAAGCCCGATATC
1 ACCGACACGAAGGCCT-GCTAGGCACAAAGCCCGATAAC
* * *
67511 ATCGACACGAA-GCTTGCTAGGCACATAGCCCGATAAC
1 ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
* ** * *
67548 ACCGACACGAAGGCCTGTTAGGCGTAAAGCCCAATATC
1 ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
67586 ACCG
1 ACCG
67590 TGCTAGCCAC
Statistics
Matches: 206, Mismatches: 51, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
37 64 0.31
38 142 0.69
ACGTcount: A:0.34, C:0.30, G:0.21, T:0.14
Consensus pattern (38 bp):
ACCGACACGAAGGCCTGCTAGGCACAAAGCCCGATAAC
Found at i:70137 original size:48 final size:48
Alignment explanation
Indices: 70066--70166 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
70056 TATCACCAAG
* *
70066 TCTATTTCTTTTCTCATTTCTATCTCGAATCCACTAACTTGTTTTATA
1 TCTATTTCTTTTCTCATTTCTATCTCGAATCCAATAACTTATTTTATA
* *
70114 TCTATTTCTTTTCTCATTTCTATCTCGAATCCAATTATTTATTTTATA
1 TCTATTTCTTTTCTCATTTCTATCTCGAATCCAATAACTTATTTTATA
70162 TCTAT
1 TCTAT
70167 ATCAACACTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.03, T:0.54
Consensus pattern (48 bp):
TCTATTTCTTTTCTCATTTCTATCTCGAATCCAATAACTTATTTTATA
Found at i:73003 original size:18 final size:18
Alignment explanation
Indices: 72980--73016 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
72970 TTAAGCGTAA
72980 TATGTATGCATGTGTGTT
1 TATGTATGCATGTGTGTT
* *
72998 TATGTATGTATTTGTGTT
1 TATGTATGCATGTGTGTT
73016 T
1 T
73017 GCAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.24, T:0.57
Consensus pattern (18 bp):
TATGTATGCATGTGTGTT
Found at i:77984 original size:16 final size:17
Alignment explanation
Indices: 77963--77999 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
77953 NNNNNNNNNN
77963 AAAAAAAAAACA-ATAA
1 AAAAAAAAAACACATAA
*
77979 AAAAAAAACACACATAA
1 AAAAAAAAAACACATAA
77996 AAAA
1 AAAA
78000 TAATATGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (17 bp):
AAAAAAAAAACACATAA
Found at i:85088 original size:27 final size:26
Alignment explanation
Indices: 85057--85112 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
85047 TATTAGATTG
* *
85057 TTATCGATCAATTATTATTTAATTAAT
1 TTATCGATAAATTAATATTT-ATTAAT
85084 TTATCGATAAATTAATATTTATTAAT
1 TTATCGATAAATTAATATTTATTAAT
85110 TTA
1 TTA
85113 GAGAATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (26 bp):
TTATCGATAAATTAATATTTATTAAT
Found at i:85600 original size:21 final size:21
Alignment explanation
Indices: 85576--85628 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
85566 CTATGACAGT
*
85576 TCTACCGATACAAGTGA-GACA
1 TCTACCGATACAAGTCATG-CA
*
85597 TCTACCGATACAAGTCATGCT
1 TCTACCGATACAAGTCATGCA
85618 TCTACCGATAC
1 TCTACCGATAC
85629 TAAAAACTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (21 bp):
TCTACCGATACAAGTCATGCA
Found at i:89008 original size:18 final size:18
Alignment explanation
Indices: 88981--89019 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
88971 CAACCCAATT
88981 CAAATACAAA-TTTAACC
1 CAAATACAAACTTTAACC
88998 CAAATTACAAACTTTAACC
1 CAAA-TACAAACTTTAACC
89017 CAA
1 CAA
89020 GTCTAAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 4 0.20
18 6 0.30
19 10 0.50
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (18 bp):
CAAATACAAACTTTAACC
Found at i:95053 original size:16 final size:16
Alignment explanation
Indices: 95032--95063 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95022 ATGAGTTGAG
95032 TATGCAATATGAATCA
1 TATGCAATATGAATCA
95048 TATGCAATATGAATCA
1 TATGCAATATGAATCA
95064 AAAGCAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (16 bp):
TATGCAATATGAATCA
Found at i:95070 original size:16 final size:16
Alignment explanation
Indices: 95035--95079 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
95025 AGTTGAGTAT
* *
95035 GCAATATGAATCATAT
1 GCAATATGAATCAAAA
95051 GCAATATGAATCAAAA
1 GCAATATGAATCAAAA
95067 GC-A-ATGAATCAAA
1 GCAATATGAATCAAA
95080 GAATCGAGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 10 0.37
15 1 0.04
16 16 0.59
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.22
Consensus pattern (16 bp):
GCAATATGAATCAAAA
Found at i:107986 original size:18 final size:18
Alignment explanation
Indices: 107963--108000 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
107953 GGTTGGATAT
* *
107963 GGTGCAGGTGCAGGTGAA
1 GGTGCAGGAGCAGATGAA
107981 GGTGCAGGAGCAGATGAA
1 GGTGCAGGAGCAGATGAA
107999 GG
1 GG
108001 AAAAGGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.11, G:0.50, T:0.13
Consensus pattern (18 bp):
GGTGCAGGAGCAGATGAA
Found at i:109028 original size:35 final size:34
Alignment explanation
Indices: 108989--109054 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 34
108979 TCAATTATCA
* *
108989 TATTTAGTTTATTTTTACTCTTTATATATTTTAGT
1 TATTTAGCTTATTCTTACTCTTTAT-TATTTTAGT
* *
109024 TATTTTGCTTATTCTTATTCTTTATTATTTT
1 TATTTAGCTTATTCTTACTCTTTATTATTTT
109055 TATTATGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 6 0.22
35 21 0.78
ACGTcount: A:0.20, C:0.08, G:0.05, T:0.68
Consensus pattern (34 bp):
TATTTAGCTTATTCTTACTCTTTATTATTTTAGT
Found at i:109057 original size:16 final size:16
Alignment explanation
Indices: 109032--109132 Score: 78
Period size: 16 Copynumber: 6.1 Consensus size: 16
109022 GTTATTTTGC
*
109032 TTATTCTTATTCTTTA
1 TTATTTTTATTCTTTA
* *
109048 TTATTTTTATTATGTA
1 TTATTTTTATTCTTTA
*
109064 TTATATTTTATAC-TTA
1 TTAT-TTTTATTCTTTA
109080 TTATATTTTGATTCTTTA
1 TTAT-TTTT-ATTCTTTA
* * *
109098 TATATTTATATACTTATT
1 T-TATTTTTATTCTT-TA
*
109116 TTATTTTTATTCCTTA
1 TTATTTTTATTCTTTA
109132 T
1 T
109133 ATAAATCTAA
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
16 30 0.45
17 24 0.36
18 9 0.14
19 3 0.05
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (16 bp):
TTATTTTTATTCTTTA
Found at i:109073 original size:26 final size:25
Alignment explanation
Indices: 109013--109074 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
109003 TTACTCTTTA
* *
109013 TATATTTTAGTTATTTTGCTTATTCT
1 TATATTTTA-TTATTTTGATTATTAT
*
109039 TAT-TCTTTATTATTTTTATTATGTAT
1 TATAT-TTTATTATTTTGATTAT-TAT
109065 TATATTTTAT
1 TATATTTTAT
109075 ACTTATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 12 0.40
26 17 0.57
27 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (25 bp):
TATATTTTATTATTTTGATTATTAT
Found at i:109120 original size:17 final size:16
Alignment explanation
Indices: 109045--109122 Score: 72
Period size: 17 Copynumber: 4.8 Consensus size: 16
109035 TTCTTATTCT
109045 TTATTAT-TTTTATTA-
1 TTATTATATTTTA-TAC
109060 TGTATTATATTTTATAC
1 T-TATTATATTTTATAC
*
109077 TTATTATATTTTGATTC
1 TTATTATATTTT-ATAC
109094 TT-TATATATTTATATAC
1 TTAT-TATATTT-TATAC
*
109111 TTATTTTATTTT
1 TTATTATATTTT
109123 TATTCCTTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
15 1 0.02
16 21 0.40
17 29 0.55
18 2 0.04
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.67
Consensus pattern (16 bp):
TTATTATATTTTATAC
Found at i:109133 original size:34 final size:33
Alignment explanation
Indices: 109048--109135 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 33
109038 TTATTCTTTA
109048 TTATTTTTATT-ATGTATTATATTTTATACTTATT
1 TTATTTTTATTCAT-TA-TATATTTTATACTTATT
* * *
109082 ATATTTTGATTCTTTATATATTTATATACTTATT
1 TTATTTTTATTCATTATATATTT-TATACTTATT
*
109116 TTATTTTTATTCCTTATATA
1 TTATTTTTATTCATTATATA
109136 AATCTAATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 7 0.15
34 38 0.83
35 1 0.02
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (33 bp):
TTATTTTTATTCATTATATATTTTATACTTATT
Found at i:111955 original size:10 final size:10
Alignment explanation
Indices: 111930--111967 Score: 51
Period size: 9 Copynumber: 3.8 Consensus size: 10
111920 TATGTGAAAC
111930 TTCAAAAAAT
1 TTCAAAAAAT
111940 TT-AAAAAAT
1 TTCAAAAAAT
111949 TTCAAAAAAAT
1 TTC-AAAAAAT
*
111960 TTTAAAAA
1 TTCAAAAA
111968 TTGTTAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 9 0.36
10 7 0.28
11 9 0.36
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (10 bp):
TTCAAAAAAT
Found at i:112022 original size:19 final size:20
Alignment explanation
Indices: 111993--112037 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
111983 TTTAGATTTG
111993 TTTTAGAAAA-TCTTAA-AA
1 TTTTAGAAAATTCTTAAGAA
*
112011 TTTTATGAAAATTTTTAAGAA
1 TTTTA-GAAAATTCTTAAGAA
112032 TTTTAG
1 TTTTAG
112038 TGTATTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 5 0.22
20 6 0.26
21 7 0.30
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTAGAAAATTCTTAAGAA
Found at i:114693 original size:42 final size:42
Alignment explanation
Indices: 114624--114712 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
114614 TGAAAAGAAT
** * **
114624 GAAAAACGCGTCCAGTTGAGCGTGCTTTCTGCACAGTTGGA-A
1 GAAAAACGCGTCCAACTGAGCGAGCTTTCCACACAGTT-GATA
* *
114666 GAAAAACTCGTCCAACTGGGCGAGCTTTCCACACAGTTGATA
1 GAAAAACGCGTCCAACTGAGCGAGCTTTCCACACAGTTGATA
114708 GAAAA
1 GAAAA
114713 GTGTGTCTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.21
Consensus pattern (42 bp):
GAAAAACGCGTCCAACTGAGCGAGCTTTCCACACAGTTGATA
Found at i:121665 original size:22 final size:22
Alignment explanation
Indices: 121617--121670 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
121607 AAATGATAGC
*
121617 AAAATAGTGAAAAAAAAAACAAG
1 AAAATAGT-AAAAAAAAAACAAA
* **
121640 AAAATAGTAACAAAAAATTAAA
1 AAAATAGTAAAAAAAAAACAAA
*
121662 AAAACAGTA
1 AAAATAGTA
121671 TTTTTTTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.72, C:0.06, G:0.09, T:0.13
Consensus pattern (22 bp):
AAAATAGTAAAAAAAAAACAAA
Found at i:124469 original size:13 final size:12
Alignment explanation
Indices: 124438--124479 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
124428 ATTTACATTA
124438 AATTAATAAACAT
1 AATTAATAAA-AT
*
124451 ATTTAATAATAAT
1 AATTAATAA-AAT
124464 AATTAA-AAAAT
1 AATTAATAAAAT
124475 AATTA
1 AATTA
124480 TTGAAATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 8 0.31
12 2 0.08
13 15 0.58
14 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
AATTAATAAAAT
Found at i:125307 original size:13 final size:11
Alignment explanation
Indices: 125275--125331 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 11
125265 ATCACAACTT
125275 AATTTTAAATA
1 AATTTTAAATA
125286 AAGTTTTAAATGA
1 AA-TTTTAAAT-A
125299 GAATTTTAAATTA
1 -AATTTTAAA-TA
*
125312 AATTATAAAT-
1 AATTTTAAATA
*
125322 ATTTTTAAAT
1 AATTTTAAAT
125332 GTCAATCTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 8 0.21
11 3 0.08
12 16 0.41
13 9 0.23
14 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (11 bp):
AATTTTAAATA
Done.