Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013250.1 Kokia drynarioides strain JFW-HI SEQ_128270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6323
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2705 original size:21 final size:19

Alignment explanation


    Indices: 2681--2720  Score: 53
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       2671 GTGTTTTAAT

                                 
       2681 GACTAAAAATTCAATTTAAAA
          1 GACTAAAAA-TC-ATTTAAAA

                   *           
       2702 GACTAAATATCATTTAAAA
          1 GACTAAAAATCATTTAAAA

       2721 CTAATAGAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    8  0.44
  20    2  0.11
  21    8  0.44

ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30


Consensus pattern (19 bp):   
GACTAAAAATCATTTAAAA

Found at i:4467 original size:29 final size:31

Alignment explanation


    Indices: 4428--4487  Score: 81
    Period size: 29  Copynumber: 2.0  Consensus size: 31

       4418 AAAAAAATTT

                                            
       4428 AAAGAAACAAAAATGAA-AGGG-T-AATTTTA
          1 AAAGAAACAAAAAT-AAGAGGGTTGAATTTTA

                *                          
       4457 AAAGGAACAAAAATAAGAGGGTTGAATTTTA
          1 AAAGAAACAAAAATAAGAGGGTTGAATTTTA

       4488 GCAAAAATAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 4
        0.84            0.03        0.12

Matches are distributed among these distances:
  28    2  0.07
  29   17  0.63
  30    1  0.04
  31    7  0.26

ACGTcount: A:0.55, C:0.03, G:0.20, T:0.22


Consensus pattern (31 bp):   
AAAGAAACAAAAATAAGAGGGTTGAATTTTA
Done.