Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013253.1 Kokia drynarioides strain JFW-HI SEQ_128273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11657
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Warning! 80 characters in sequence are not A, C, G, or T
Found at i:527 original size:216 final size:216
Alignment explanation
Indices: 4--1312 Score: 1316
Period size: 216 Copynumber: 6.1 Consensus size: 216
1 TAC
* ** * * * * *
4 AAATGGCAAACTATTTTTACAAAATGCTGCGATTT-CTCGATAATGGAAT-CTTCAAAAAATTGG
1 AAATGACAAACTATTTAAACCAAATGATACGATTTCCT-GATCATGGAATGC-TCGAAAAATTGG
* * * ** * * *
67 TCAAAGAAATGGATCGTCAAGAAAACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTT
64 TCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * *
132 GACTAGTTCA-TATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTC-A-TGAAAATAAGTATTT
129 GACAAGTTCAGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCTAGT-AAAA-AAGTTTTT
* *
194 AATTCAAAGACTAAAAATT-TATACA
191 AATTCAAAGACCAAAAATTGTTTACA
* * * * ** *
219 AAATGATAAACTATTTAAATCAAACGA-AGCGATTTCCCGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAAACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* * * * *
282 CTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAATGTTT
65 C-GAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT
* * *
347 AACCAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTAGTAAAAAAGTTTTTAAC
129 GACAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTAGTAAAAAAGTTTTTAAT
*
412 TCAAAGACCAAAAGTTGTTTACA
194 TCAAAGACCAAAAATTGTTTACA
* * *
435 AAATGACTAACTATTTAGACCAAATGATACGATTTCCTGATCACGGAATGCTCGAAAAATTGGTC
1 AAATGACAAACTATTTAAACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
** * * *
500 GAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTCAATGTTTGA
66 GAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA
* * * * *
565 CAAGTTC-GATACTTCGTCCAAAAACCAAGAGAG-AACGAATTCT-AATGTAAAAAGGCTTTTAA
131 CAAGTTCAGA-ATTTCGTCCAAGAACCAAGAGAGAAAC-AATTCTCTA-GTAAAAAAGTTTTTAA
* * *
627 TTCAACGACCAAAATTTATTTAC-
193 TTCAAAGACCAAAAATTGTTTACA
* ** * * * *
650 AAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCT-ATAATGGAAT-CTTCAAAAAATTGG
1 AAATGACAAACTATTTAAACCAAATGATACGATTTC-CTGATCATGGAATGC-TCGAAAAATTGG
* * * *
713 TCAAAGAAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTT
64 TCGAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * * *
778 GACTAGTTCA-TATGTTCGTCCGAGAACCAAGACG-GAAATAATTCT-TACGTAAATAAGTATTT
129 GACAAGTTCAGAAT-TTCGTCCAAGAACCAAGA-GAGAAACAATTCTCTA-GTAAAAAAGTTTTT
* * *
840 GATTCAAAGACTAAAAATTGTATACA
191 AATTCAAAGACCAAAAATTGTTTACA
* * * * ** *
866 AAATGATAAACTATTTAAATCAAACGA-AGCGATTTCATGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAAACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
** * * * *
929 CTGAAGGAATGGATCGCCTTTAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAATGTTT
65 C-GAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * *
994 -ACCCAGTTCAGAAGTTCGTCCAAGAACTAATAGAGAAACAATTCTCTTAG-AAAAAAGTTTTTA
129 GA-CAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-TAGTAAAAAAGTTTTTA
* *
1057 CTTCAAAGACCAAAAGTTGTTTACA
192 ATTCAAAGACCAAAAATTGTTTACA
*
1082 AAATGACAAACTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
1 AAATGACAAACTATTTAAACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
** *
1147 GAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGAAGTTGTAAAAGAACTAGTAAATGTTTGA
66 GAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA
* * * *
1212 CAAGTTC-GATACTTCGTCCAAGAACCAAGACAGAAAGAATTCTAATA-TAAAAAAGTTTTTAAT
131 CAAGTTCAGA-ATTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CTAGTAAAAAAGTTTTTAAT
* *
1275 TCAAAGACCAAAATTTATTTAC-
194 TCAAAGACCAAAAATTGTTTACA
*
1297 AAATGGCAAACTATTT
1 AAATGACAAACTATTT
1313 TTACAAAATG
Statistics
Matches: 894, Mismatches: 165, Indels: 70
0.79 0.15 0.06
Matches are distributed among these distances:
214 3 0.00
215 351 0.39
216 530 0.59
217 8 0.01
218 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
AAATGACAAACTATTTAAACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
GAAGGAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA
CAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTAGTAAAAAAGTTTTTAATTC
AAAGACCAAAAATTGTTTACA
Found at i:849 original size:431 final size:431
Alignment explanation
Indices: 4--7276 Score: 6361
Period size: 431 Copynumber: 16.7 Consensus size: 431
1 TAC
* ** * * * * *
4 AAATGGCAAACTATTTTTACAAAATGCTGCGATTT-CTCGATAATGGAAT-CTTCAAAAAATTGG
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCT-GATCATGGAATGC-TCGAAAAATTGG
* * ** * * * *
67 TCAAAGAAATGGATCGTCAAGAAAACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTT
64 TCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * *
132 GACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCATG-AAAATAAGTATTTA
129 GACAAGTTCGATA-GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAA-AAGTTTTTA
* * * * * *
195 ATTCAAAGACTAAAAATTTA--TACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCG
192 ATTCAAAGAC-CAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTCG
** * * * *
258 GGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAA
255 ATCATGGAATCTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA
* * * * *
322 GTTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAT-TTCGTCCAAGAACCAAGAGAGAAAC
319 GTTATAAAAGAACTTGTAAATGTTTGACTAGTTCA-TATGTTCGTCCAAGAACCAAGAGAGAAAT
*
386 AATTCTCTA-GTAAAAAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACA
383 AATTCTC-ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* *
435 AAATGACTAACTATTTAGACCAAATGATACGATTTCCTGATCACGGAATGCTCGAAAAATTGGTC
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
* ** * *
500 GAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTCAATGTTTGA
66 GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGA
* * * * * *
565 CAAGTTCGATACTTCGTCCAAAAACCAAGAGAGAACGAATTCTAATGTAAAAAGGCTTTTAATTC
131 CAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATTC
* * ** * * *
630 AACGACCAAAATTTATTTACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCTATAATG
196 AAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCATG
* * * *
695 GAATCTTCAAAAAATTGGTCAAAGAAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAA
261 GAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAA
* * *
760 AAGAACTTGTAAAAGTTTGACTAGTTCATATGTTCGTCCGAGAACCAAGACG-GAAATAATTCTT
326 AAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGA-GAGAAATAATTCTC
* * * * * *
824 ACGTAAATAAGTATTTGATTCAAAGACTAAAAATTGTATACA
390 ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * ** *
866 AAATGATAAACTATTTAAATCAAACGA-AGCGATTTCATGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAGACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* * * *
929 CTGAAGGAATGGATCGCCTTTAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAATGTTT
65 C-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * *
994 -ACCCAGTTCAGA-AGTTCGTCCAAGAACTAATAGAGAAACAATTCTCTTAG-AAAAAAGTTTTT
129 GA-CAAGTTC-GATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCAT-GTAAAAAAGTTTTT
* * * * *
1056 ACTTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTC-CT
191 AATTCAAAGACCAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTC-
* **
1120 GATCATGGAATGC-TCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGA
254 GATCATGGAAT-CTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGA
* * * * *
1184 AGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATA-CTTCGTCCAAGAACCAAGACAGAAA
318 AGTTATAAAAGAACTTGTAAATGTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGAGAAA
* * ** * *
1248 GAATTCTAATATAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-
382 TAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* ** * * * *
1297 AAATGGCAAACTATTTTTACAAAATGCTGCGATTT-CTCGATAATGGNNNNNNNNNNNNNNNNNN
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCT-GATCATGG------------------
**********************
1361 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATCTTCAAAAAATTGGTCAAAGAAATGGAT
47 ----------AATGCTCGAAAAATTGGTCGAAGG------------------------AATGGAT
* * * * * * *
1426 CATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTTACTAGTT-TATAT
78 CGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGATA-
* * * * * * *
1490 GTTCGTCCGAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAA
142 GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATTCAAAGACCAAAA
* * * * * * * * ** *
1555 ATTGTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGCATGGAATGTTCGA
207 TTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCATGGAATCTTCGA
* * * *
1620 AAAATTGG-CTGAAGGAATGGCTTGTCTTTAATACTCTAAGGAACAC-AAGTTATAAAAGAACTT
271 AAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAAC-CGAAGTTATAAAAGAACTT
* * * * * *
1683 GAAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCTCGTAAAAA
334 GTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAAAA
*
1748 AGTTTTTAATTCAAAGACCAAAAGTTGCTTACA
399 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* *
1781 AAATGACAAACTATTTTGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTAGTC
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
* ** * * *
1846 GAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTCAATTTTTGA
66 GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGA
* * *
1911 CAAGTTCGATATTTCATCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTC
131 CAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATTC
* ** * *
1976 AAAGACCAAAATTTATTTACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCGATAATG
196 AAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCATG
* * * * *
2041 GAATCTTCAAAAAATTGGTCAAAGAAATGGATGGTCTTGAATACTCTCAAGAACCGAAGTTATAA
261 GAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAA
* * * * *
2106 AAGAACTTGTAAAAGTTTGACTAGCTCATATGTTCGTCAAAGAACCAATAGGGAAATAATTCTCA
326 AAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCA
* * * * *
2171 CGTAAATAAGTATTTAATTCAAAGACTAAAATTTGTATACA
391 CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * ** *
2212 AAATGATAAACTATTTAAATCAAACGA-AGCGATTTCCCGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAGACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* * * **
2275 CTGAAGGAATGGATCGTCTTTAATTCTCTCAAGAATCGAAGTTATAAAAGAACTCTTAAATGTTT
65 C-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * * * * *
2340 AACCAGTTTAGA-AGTTCGTCCAAGAACTAATAGAGAAACAATTCCCACGTAAAAAAGTTTTTAA
129 GACAAG-TTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAA
* * * * *
2404 TTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGACCAAATGATACGATTTC-CTGA
193 TTCAAAGACCAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTC-GA
* **
2468 TCATGGAATGC-TCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGAAG
256 TCATGGAAT-CTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAG
* * * * *
2532 TTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATA-CTTCGTCCAAGAACCAAGAGAGAAAGA
320 TTATAAAAGAACTTGTAAATGTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGAGAAATA
* * * * *
2596 ATTCTAAAGTAACAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-
384 ATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* ** * * * * *
2643 AAATGGCAAACTATTTTTACAAAATGCTGCGATTT-CTCGATAATGGAAT-CTTCAAAAAATTGG
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCT-GATCATGGAATGC-TCGAAAAATTGG
* * * * * *
2706 TCAAAGAAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTTGTAAAAGTTT
64 TCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * * * * * * *
2771 GACTAG-CCCATATGTTCGTCAAAGAACCAATAGGGAAAAAATTCTCACGTAAATAAGTATTTAA
129 GACAAGTTCGATA-GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAA
* * * * * * * * *
2835 TTCAAAGACTAAAAATTGTA-TAAAAAATGATAAACTATTTAAATCAAAAGAAGCGATTTCCCGG
193 TTCAAAGAC-CAAAATT-TATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGA
* * * * * *
2899 GCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGAAG
256 TCATGGAATCTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAG
* * ** * * * *
2963 TTATAAAAGAACTCGAAAATGTTTGACGT-GTTCGA-AAATTCATCCAAGAACAAATAGAGAAAC
320 TTATAAAAGAACTTGTAAATGTTTGAC-TAGTTC-ATATGTTCGTCCAAGAACCAAGAGAGAAAT
* *
3026 AATTCCCACGTAAAAAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACA
383 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
3075 AAATGACAAACGATTTAGACCAAATGGTACGATTTCCACCAAATGGTACGATTTCCTGATCATGG
1 AAATGACAAACTATTTAGACCAAA---T--G-----------A---TACGATTTCCTGATCATGG
* ** * *
3140 AATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCACAGGAATCGAAGTTGTAAA
47 AATGCTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAA
* * * *
3205 AGAACTAGTAAATGTTTGACAAGTTCAATACTTCGTACAAGAACCAAGAGAGAAAGAATTCTAAT
112 AGAACTAGTAAATGTTTGACAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCAT
* * ** *
3270 GTAACAAA-TTTTTAATTCAAAGACCAAAATTTATTTACAAATGGCAAACTATTTTTACAAAATG
177 GTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATG
* * * * * *
3334 CTGCGATTTCTCGATAATGGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTGTTGAATACTC
242 ATGCGATTTCTCGATCATGGAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTC
* * *
3399 TCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAGTAGTTCATATGTTCGTCCAAGAACA
307 TCAGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACC
* * * * * *
3464 AATAGGGAAATAATTCTCACGTAAATAAGTATTTAATTCAAAGACTAAAAATT-TTATACA
372 AAGAGAGAAATAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTT-TACA
* * ** * * * *
3524 AAATGATAAACTATTTAAATTAAACGA-AGCGATTTCC-CAGGCATGGAATGTTCGAAAAATTGG
1 AAATGACAAACTATTTAGACCAAATGATA-CGATTTCCTGA-TCATGGAATGCTCGAAAAATTGG
* * * * * *
3587 -CTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGAAGTTATAAAATAACTCGAAAATGTT
64 TC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTT
** * * * * * *
3651 TGACGTGTTCGAAAGTTCATCCAAGAA-CAATTAGAGAAACAATTCCCACGTAAAAAAGTTTTTA
128 TGACAAGTTCGATAGTTCGTCCAAGAACCAA-GAGAGAAAGAATTCTCATGTAAAAAAGTTTTTA
* * * * * *
3715 ATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACGATTTAGACCAAATGGTACGATTTC-CTG
192 ATTCAAAGACCAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTC-G
* ** * *
3779 ATCATGGAATGCTT-GAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCACAGGAATCGAA
255 ATCATGGAAT-CTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA
* ** * * * *
3843 GTTGTAAAAGAACAAGTAAATGTTTTACAAGTTCA-ATACTTCGTCCAAGAACCAAGAGAGAAAG
319 GTTATAAAAGAACTTGTAAATGTTTGACTAGTTCATAT-GTTCGTCCAAGAACCAAGAGAGAAAT
* * * * * *
3907 AATTCTAATGTAACAAAGTTTCTAATTCAAAGACCAAAATTTATTTAC-
383 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* ** ** ** * **
3955 AAATGGCAAACTATTTTTACCAAATTCTGTGATTT-CTCGATAATGGAAT-CTTTAAAAAATTGG
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCT-GATCATGGAATGC-TCGAAAAATTGG
* * * * * *
4018 TCAAAGAAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTT
64 TCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * * *
4083 GACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACG-AAAATAAGTATTTA
129 GACAAGTTCGATA-GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAA-AAGTTTTTA
* ** * * *
4146 ATTCAAAGACTAAAAATTTA--TACAAACTGATTAACTATTTAAATCAAACGAAGCGATTTCTCG
192 ATTCAAAGAC-CAAAATTTATTTACAAA-TGACAAACTATTTAAACCAAATGATGCGATTTCTCG
** * * * * *
4209 GGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGAT
255 ATCATGGAATCTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGA-
* * * * * *
4273 A-TTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
318 AGTTATAAAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAAT
*
4337 AATTC-CAATGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
383 AATTCTC-ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
4386 AAATGACAAA-TGGTTTAGACCGACTGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
1 AAATGACAAACT-ATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* ** * *
4450 CGAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGAAAATGTTTG
65 CGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTG
* * * *
4515 ACAAGTTCGTTACTTCTTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATT
130 ACAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATT
* * * * *
4580 CAAAGACCAAAATTTATTTACAAATGGCAAACTATTT-TACAAAATGCTGCGATTTCTCGATAAT
195 CAAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCAT
* * * * *
4644 GGATTCTTCAAAAAATTGGTCAAAGAAATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATA
260 GGAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATA
* *
4709 AAAGAACTTGTAAAAGTTTGACTAGTTCATATGTTGGTCCAAGAACCAAGAG-GAAAATAATTCT
325 AAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAG-AAATAATTCT
* * * *
4773 CACGTAAATAAGTATTTAATTCAAAGACTACAAA-TTGTATACA
389 CACGTAAAAAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACA
* * *** * * ** *
4816 AAATGATAAACTATTTAAATTGAACGA-AGCGATTTCCCGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAGACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* * *
4879 CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTATAAAAGAACTCGAAAATGTTT
65 C-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * *
4944 AACCAA-TTCAGA-AGTTCGTCAAAGAATCAAGAGAGAAATAATTCTC-TCGTAAAAAAGTTTTT
129 GA-CAAGTTC-GATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCAT-GTAAAAAAGTTTTT
* * * *
5006 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTC-CT
191 AATTCAAAGACCAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTC-
* ** * **
5070 GATCATGGAATGC-TCGAAAAATTGGTCGACA-GAATGGATCATCTTGGCTACTCTCAAGAATTG
254 GATCATGGAAT-CTTCGAAAAATTGGTCGA-AGGAATGGATCGTCTTGAATACTCTCAGGAACCG
* * * *
5133 AAGTTGTAAAAGAACTTGTAAATGTTTGACAAGTTCGATA-CTTCGTCCAGGAACCAAGAGAGAA
317 AAGTTATAAAAGAACTTGTAAATGTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGAGAA
* * * * *
5197 AGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-
381 ATAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* ** *************************** *
5247 AAATGGCAAACTATTTTTACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAAAAATT
1 AAATGACAAACTATTTAGACCAAA----TGATACGATTTCCTGATCATGGAATGCTCGAAAAATT
* * * * *
5312 GGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGT
62 GGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGT
* * * * * *
5377 TTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTT
127 TTGACAAGTTCGATA-GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTT
* * * * * * *
5441 ATTTCAAAGACTAAAAATTTA--TACAAAATGATAAACTATTTAAATCAAATAAAGCGATTTCAC
191 AATTCAAAGAC-CAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTC
** * * * * *
5504 GGGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATTCTCTCAAGAATCGA
254 GATCATGGAATCTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGA
* * * * * * * *
5568 AGTTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAA-CTA-AGATAAAC
318 AGTTATAAAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAAT
*
5631 AATTCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
383 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
5680 AAATGACAATCTATTTAGA-CAATATGATACGATTTCCTGATCATGGAAAT-CTCGAAAAATTGG
1 AAATGACAAACTATTTAGACCAA-ATGATACGATTTCCTGATCATGG-AATGCTCGAAAAATTGG
* ** * *
5743 TCGAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGAAGTTGTAAAAGAACTAGTAAATGTTT
64 TCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * * *
5808 GACAAGTTCAATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAACAAAGTTTTTAAT
129 GACAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAAT
* * ** * *
5873 TCAAATACCAAAATTTATTTACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCGATAA
194 TCAAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCA
* * *
5938 TGGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTAT
259 TGGAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTAT
* * * * *
6003 AAAAGAAATTGTAAAAGTTTGGCTAGTTCATATGTTCGCCCAAGAACCAAGAGGGAAATAATTCT
324 AAAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * *
6068 CACG-AAAATAAGTATTTAATTCAAAGACTAAAAATT-TATACA
389 CACGTAAAA-AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
** * * * * ** *
6110 AAATGATTAACTATTTAAATCAAACGA-AGCGATTTCCCGGGCATGGAATGTTCGAAAAATTGG-
1 AAATGACAAACTATTTAGACCAAATGATA-CGATTTCCTGATCATGGAATGCTCGAAAAATTGGT
* * *
6173 CTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAATGTTT
65 C-GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTT
* * *
6238 AACCAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-TGGTAAAAAAGTTTTTA
129 GACAAGTTC-GATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCAT-GTAAAAAAGTTTTTA
* * * * * *
6301 ACTCAAAGACCAAAAGTTGTTTACAACATGACTAACTATTTAGACCAAATGATACGATTTC-CTG
192 ATTCAAAGACCAAAATTTATTTACAA-ATGACAAACTATTTAAACCAAATGATGCGATTTCTC-G
* * ** *
6365 ATCATGGAATGC-TCGGAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAA
255 ATCATGGAAT-CTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA
* * * * *
6429 GTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATA-CTTCGTCCAAGAACCAAGAGAGAAAG
319 GTTATAAAAGAACTTGTAAATGTTTGACTAGTTC-ATATGTTCGTCCAAGAACCAAGAGAGAAAT
* * * * * *
6493 AATTCTAATGTAAAAAAGTTTTCATTTCAAAGACCAAAATTTATTTAC-
383 AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* ** * * * *
6541 AAATG-GAAACTATTTTTACAAAATGCTGCGATTT-CTCGATAATGGAAT-CTTC-AAAAACTTG
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCT-GATCATGGAATGC-TCGAAAAA-TTG
* * * * * *
6602 GTCAAAGAAATGGATCGTCTTGAATACTCTTAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
63 GTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTT
* * * * * * *
6667 TGACTAGTTC-ATATGTTCGTCCAAGAACCAATAGGGAAATAATTCTCACGTAAATAAGTATTTA
128 TGACAAGTTCGATA-GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTA
* ** * * *
6731 ATTCAAAGACTAAAAATTTA--TACAAAATGATTAACTATTTAAACCAAACGAAGCGATTTCCCG
192 ATTCAAAGAC-CAAAATTTATTTAC-AAATGACAAACTATTTAAACCAAATGATGCGATTTCTCG
** * * * * *
6794 GGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGAATCGTCTTTAATACTCTCAAGAATCGAA
255 ATCATGGAATCTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAA
* * * * * ** * * *
6858 GTTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCTTGAACTAATAGAGAAACA
319 GTTATAAAAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAATA
* **
6923 ATTCCCACGTAAAAAAGTTTTTAATTCAAAGAATAAAAGTTGTTTACA
384 ATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
6971 AAATGACAAACTATTTAGACCAAATGATACGATTTACTGATCATGGAATGCTCGAAAAATTGGTC
1 AAATGACAAACTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
* * ** *
7036 GAATGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGA
66 GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGA
* *
7101 CAAGTTCGATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTC
131 CAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATTC
* * * ** * *
7166 AGAGACCAAATTTTTTTTACAAATGGA-AAACTATTTTTACCAAATGCTGCGATTTCTCGATAAT
196 AAAGACCAAAATTTATTTACAAAT-GACAAACTATTTAAACCAAATGATGCGATTTCTCGATCAT
* * *
7230 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTC
260 GGAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTC
7277 AAAAGTTGTT
Statistics
Matches: 5444, Mismatches: 1146, Indels: 504
0.77 0.16 0.07
Matches are distributed among these distances:
428 12 0.00
429 453 0.08
430 1011 0.19
431 2027 0.37
432 943 0.17
433 47 0.01
434 129 0.02
435 126 0.02
436 7 0.00
437 1 0.00
444 1 0.00
448 6 0.00
449 197 0.04
450 16 0.00
451 120 0.02
452 7 0.00
456 2 0.00
459 2 0.00
481 1 0.00
482 5 0.00
483 289 0.05
484 40 0.01
485 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (431 bp):
AAATGACAAACTATTTAGACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
GAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGA
CAAGTTCGATAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCATGTAAAAAAGTTTTTAATTC
AAAGACCAAAATTTATTTACAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGATCATG
GAATCTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAA
AAGAACTTGTAAATGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCA
CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
Found at i:1240 original size:647 final size:646
Alignment explanation
Indices: 1--7276 Score: 10761
Period size: 646 Copynumber: 11.1 Consensus size: 646
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
** *
66 GTCAAAGAAATGGATCGTCAAGAAAACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* *
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCATGAAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
196 TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
196 TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
261 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
261 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
* *
326 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTC
326 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTC
* * *
391 TCTA-GTAAAAAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAAAATGACTAACTATTTAGAC
391 -CCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
*
455 CAAATGATACGATTTCCTGATCACGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGG
455 CAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGG
*
520 CTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTCAATGTTTGACAAGTTCGATACTTCGTCCA
520 CTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCA
* * * * *
585 AAAACCAAGAGAGAACGAATTCTAATGTAAAAAGGCTTTTAATTCAACGACCAAAATTTATT
585 AGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
* *
647 TACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCTATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
712 GTCAAAGAAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* * * *
777 TGACTAGTTCATATGTTCGTCCGAGAACCAAGACGGAAATAATTCTTACGTAAATAAGTATTTGA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
**
842 TTCAAAGACTAAAAATTGTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCATGGG
196 TTCAAAGACTAAAAATT-TATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
*
907 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGCCTTTAATACTCTCAAGAATCGAAGTT
260 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTT
* *
972 ATAAAAGAACTCGTAAATGTTTACCCAGTTCAGAAGTTCGTCCAAGAACTAATAGAGAAACAATT
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATT
* *
1037 CTCTTA-G-AAAAAAGTTTTTACTTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
390 C-C-CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
1100 ACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTT
453 ACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTT
*
1165 GGCTACTCTCAGGAACCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTC
518 GGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTC
* *
1230 CAAGAACCAAGACAGAAAGAATTCTAATATAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
583 CAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
**************
1294 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGNNNNNNNNNNNNNNNN
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGG--AATCTTCAAAAAAT
********************************** * * * * *
1359 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATCTTCAAAAAATTGGTCAAAGAA-ATG
64 TGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAA-C--C--GAAGTT-ATAAAAGAACTTG
* ** * * * * * ** * * **
1423 GATCA-TCTTGAATACTCTCAGGAACCGAAGTT-ATAAAAGAACTTGTAAAAGTTTTACTAGTTT
123 TAAAAGT-TTGACTAGT-TC----A--TATGTTCGTCCAAGAAC---CAAGAG--GGA--A----
* * * ** * * * * *
1486 ATATGTTCGTC-CG-AGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAATTCAAAGA
169 ATA-ATTC-TCACGTA-AA--TA-A-GTATTTAATTC-AAAG--ACTAA--A---AATT--TATA
* *
1549 CTAAAAATTGTATACAA-AATGATAAA-CTATTTAAATCAAACGAAGCGATTTCCCGGGCATGGA
217 C--AAAA-TG-ATA-AACTAT-TTAAATC-A---------AACGAAGCGATTTCCCGGGCATGGA
* * *
1612 ATGTTCGAAAAATTGGCTGAAGGAATGGCTTGTCTTTAATACTCT-AAGGAA-CACAAGTTATAA
266 ATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAA-GAATC-GAAGTTATAA
* * * * * *
1675 AAGAACTTGAAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCT
329 AAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCCCA
* *
1740 CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAATGACAAACTATTTTGACCAAA
394 CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
*
1805 TGATACGATTTCCTGATCATGGAATGCTCGAAAAATTAGTCGAAGGAATGGATCATCTTGGCTAC
459 TGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTAC
* * * *
1870 TCTCAGGAATCGAAGTTGTAAAAGAACTAGTCAATTTTTGACAAGTTCGATATTTCATCCAAGAA
524 TCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAAGAA
1935 CCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
589 CCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
*
1993 TACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
* *
2058 GTCAAAGAAATGGATGGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* * *
2123 TGACTAGCTCATATGTTCGTCAAAGAACCAATAGGGAAATAATTCTCACGTAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
*
2188 TTCAAAGACTAAAATTTGTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
196 TTCAAAGACTAAAAATT-TATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
*
2253 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATTCTCTCAAGAATCGAAGTT
260 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTT
* * *
2318 ATAAAAGAACTCTTAAATGTTTAACCAGTTTAGAAGTTCGTCCAAGAACTAATAGAGAAACAATT
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATT
*
2383 CCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAC
390 CCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
2448 CAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGG
455 CAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGG
*
2513 CTACTCTCAGGAACCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCA
520 CTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCA
* *
2578 AGAACCAAGAGAGAAAGAATTCTAAAGTAACAAAGTTTTTAATTCAAAGACCAAAATTTATT
585 AGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
2640 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
2705 GTCAAAGAAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
** * * *
2770 TGACTAGCCCATATGTTCGTCAAAGAACCAATAGGGAAAAAATTCTCACGTAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
* *
2835 TTCAAAGACTAAAAATTGTATAAAAAATGATAAACTATTTAAATCAAAAGAAGCGATTTCCCGGG
196 TTCAAAGACTAAAAATT-TATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
*
2900 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGAAGTT
260 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTT
* * ** * * * *
2965 ATAAAAGAACTCGAAAATGTTTGACGTGTTC-GAAAATTCATCCAAGAACAAATAGAGAAACAAT
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAG-AAGTTCGTCCAAGAACTAAGAGAGAAACAAT
* *
3029 TCCCACGTAAAAAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACGATTTAGA
389 TCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
3094 CCAAATGGTACGATTTCCACCAAATGGTACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
454 CCAAA---T--G-----------A---TACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTC
*
3159 GAAGGAATGGATCATCTTGGCTACTCACAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGA
500 GAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGA
* * *
3224 CAAGTTCAATACTTCGTACAAGAACCAAGAGAGAAAGAATTCTAATGTAACAAA-TTTTTAATTC
565 CAAGTTCGATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTC
3288 AAAGACCAAAATTTATT
630 AAAGACCAAAATTTATT
3305 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
3370 GTCAAAGAAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* * *
3435 TGAGTAGTTCATATGTTCGTCCAAGAACAAATAGGGAAATAATTCTCACGTAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
* *
3500 TTCAAAGACTAAAAATTTTATACAAAATGATAAACTATTTAAATTAAACGAAGCGATTTCCCAGG
196 TTCAAAGACTAAAAA-TTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
*
3565 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGAAGTT
260 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTT
* * * ** * *
3630 ATAAAATAACTCGAAAATGTTTGACGTGTTC-GAAAGTTCATCCAAGAAC-AATTAGAGAAACAA
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAG-AAGTTCGTCCAAGAACTAA-GAGAGAAACAA
*
3693 TTCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACGATTTAG
388 TTCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* *
3758 ACCAAATGGTACGATTTCCTGATCATGGAATGCTTGAAAAATTGGTCGAAGGAATGGATCATCTT
453 ACCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTT
* * * *
3823 GGCTACTCACAGGAATCGAAGTTGTAAAAGAACAAGTAAATGTTTTACAAGTTCAATACTTCGTC
518 GGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTC
* *
3888 CAAGAACCAAGAGAGAAAGAATTCTAATGTAACAAAGTTTCTAATTCAAAGACCAAAATTTATT
583 CAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
* * * *
3952 TACAAATGGCAAACTATTTTTACCAAATTCTGTGATTTCTCGATAATGGAATCTTTAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
4017 GTCAAAGAAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
*
4082 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGAAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
* * *
4147 TTCAAAGACTAAAAATTTATACAAACTGATTAACTATTTAAATCAAACGAAGCGATTTCTCGGGC
196 TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
*
4212 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTTAAGAATCGATA-TT
261 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGA-AGTT
*
4276 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATT
* * *
4341 CCAATGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA-TGGTTTAGA
390 CCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-ATTTAGA
* *
4405 CCGACTGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTG
454 CCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTG
* * *
4470 GCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGAAAATGTTTGACAAGTTCGTTACTTCTTCC
519 GCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCC
4535 AAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
584 AAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
*
4598 TACAAATGGCAAACTA-TTTTACAAAATGCTGCGATTTCTCGATAATGGATTCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
4662 GTCAAAGAAATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* *
4727 TGACTAGTTCATATGTTGGTCCAAGAACCAAGAGGAAAATAATTCTCACGTAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
* **
4792 TTCAAAGACTACAAATTGTATACAAAATGATAAACTATTTAAATTGAACGAAGCGATTTCCCGGG
196 TTCAAAGACTAAAAATT-TATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGG
*
4857 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTT
260 CATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTT
* * * *
4922 ATAAAAGAACTCGAAAATGTTTAACCAATTCAGAAGTTCGTCAAAGAA-TCAAGAGAGAAATAAT
325 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACT-AAGAGAGAAACAAT
* *
4986 TCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
389 TCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
5051 CCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGACA-GAATGGATCATCTT
454 CCAAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGA-AGGAATGGATCATCTT
* * *
5115 GGCTACTCTCAAGAATTGAAGTTGTAAAAGAACTTGTAAATGTTTGACAAGTTCGATACTTCGTC
518 GGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTC
*
5180 CAGGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
583 CAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
***************************
5244 TACAAATGGCAAACTATTTTTACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAAAA
1 TACAAATGGCAAACTATTTTTA-CAAA---ATGCTGCGATTTCTCGATAATGGAATCTTCAAAAA
5309 ATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
62 ATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
5374 AGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTAT
127 AGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTAT
* ** *
5439 TTATTTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAATAAAGCGATTTCAC
192 TTAATTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCC
*
5504 GGGCATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATTCTCTCAAGAATCGAA
257 GGGCATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAA
*
5569 GTTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACT-A-AGATAAACA
322 GTTATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACA
*
5632 ATTCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTA
387 ATTCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTA
5697 GA-CAATATGATACGATTTCCTGATCATGGAAAT-CTCGAAAAATTGGTCGAAGGAATGGATCAT
452 GACCAA-ATGATACGATTTCCTGATCATGG-AATGCTCGAAAAATTGGTCGAAGGAATGGATCAT
* *
5760 CTTGGCTACTCTCAGGAACCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCAATACTTC
515 CTTGGCTACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTC
* *
5825 GTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAACAAAGTTTTTAATTCAAATACCAAAATTTA
580 GTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTA
5890 TT
645 TT
*
5892 TACAAATGGCAAACTATTTTTACCAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
5957 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAAATTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
* * *
6022 TGGCTAGTTCATATGTTCGCCCAAGAACCAAGAGGGAAATAATTCTCACGAAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
*
6087 TTCAAAGACTAAAAATTTATACAAAATGATTAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
196 TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
6152 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
261 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
*
6217 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
326 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTC
* ** * * *
6282 TCTGGTAAAAAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAACATGACTAACTATTTAGACC
391 CCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
*
6347 AAATGATACGATTTCCTGATCATGGAATGCTCGGAAAATTGGTCGAAGGAATGGATCATCTTGGC
456 AAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGC
6412 TACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAA
521 TACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAA
* *
6477 GAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTCATTTCAAAGACCAAAATTTATT
586 GAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
*
6538 TACAAATGG-AAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAACTTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
*
6602 GTCAAAGAAATGGATCGTCTTGAATACTCTTAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
66 GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
*
6667 TGACTAGTTCATATGTTCGTCCAAGAACCAATAGGGAAATAATTCTCACGTAAATAAGTATTTAA
131 TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
* *
6732 TTCAAAGACTAAAAATTTATACAAAATGATTAACTATTTAAACCAAACGAAGCGATTTCCCGGGC
196 TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
*
6797 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGAATCGTCTTTAATACTCTCAAGAATCGAAGTTA
261 ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
** *
6862 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCTTGAACTAATAGAGAAACAATTC
326 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTC
**
6927 CCACGTAAAAAAGTTTTTAATTCAAAGAATAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
391 CCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* *
6992 AAATGATACGATTTACTGATCATGGAATGCTCGAAAAATTGGTCGAATGAATGGATCATCTTGGC
456 AAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGC
7057 TACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAA
521 TACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAA
* * *
7122 GAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAGAGACCAAATTTTTTT
586 GAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
* *
7183 TACAAATGGAAAACTATTTTTACCAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
1 TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
7248 GTCAAAGAAATGGATCGTCTTGAATACTC
66 GTCAAAGAAATGGATCGTCTTGAATACTC
7277 AAAAGTTGTT
Statistics
Matches: 5997, Mismatches: 513, Indels: 240
0.89 0.08 0.04
Matches are distributed among these distances:
644 310 0.05
645 804 0.13
646 1523 0.25
647 1519 0.25
648 278 0.05
649 8 0.00
650 152 0.03
651 155 0.03
652 2 0.00
653 1 0.00
654 15 0.00
655 9 0.00
656 7 0.00
657 6 0.00
658 2 0.00
659 5 0.00
660 7 0.00
661 7 0.00
662 4 0.00
663 4 0.00
664 2 0.00
665 467 0.08
666 154 0.03
667 5 0.00
669 2 0.00
670 8 0.00
671 5 0.00
672 8 0.00
673 3 0.00
674 8 0.00
675 5 0.00
676 7 0.00
677 2 0.00
679 5 0.00
681 2 0.00
683 4 0.00
684 4 0.00
685 7 0.00
686 8 0.00
687 5 0.00
688 2 0.00
689 6 0.00
690 7 0.00
691 9 0.00
692 14 0.00
693 1 0.00
694 1 0.00
696 1 0.00
697 3 0.00
698 4 0.00
699 420 0.07
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (646 bp):
TACAAATGGCAAACTATTTTTACAAAATGCTGCGATTTCTCGATAATGGAATCTTCAAAAAATTG
GTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTT
TGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCTCACGTAAATAAGTATTTAA
TTCAAAGACTAAAAATTTATACAAAATGATAAACTATTTAAATCAAACGAAGCGATTTCCCGGGC
ATGGAATGTTCGAAAAATTGGCTGAAGGAATGGATCGTCTTTAATACTCTCAAGAATCGAAGTTA
TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTC
CCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
AAATGATACGATTTCCTGATCATGGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGC
TACTCTCAGGAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGATACTTCGTCCAA
GAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATT
Found at i:1783 original size:216 final size:216
Alignment explanation
Indices: 1393--7276 Score: 5316
Period size: 216 Copynumber: 27.2 Consensus size: 216
1383 NNNNNNNNNN
* * * * * * *
1393 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCATCTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * * * * *
1458 AAAGAACTTGTAAAA-GTTTTACTAGTTTATATGTTCGTCCGAGAACCAAGAGGGAAATAATTCT
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * * *
1522 CACGTAAATAAGTATTTAATTCAAAGACTAAAAATTGTATACAAAATGATAAACTATTTAAATCA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
* **
1587 AACGAAGCGATTTCCCGGGCAT
195 AATGAAGCGATTTCCCGATCAT
* * * *
1609 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGCTTGTCTTTAATACTCTAAGGAA-CACAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTAAGGAATC-GAAGTTA
* *
1672 TAAAAGAACTTGAAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * **
1737 TCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAATGACAAACTATTTTGACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
*
1802 AAATGATA-CGATTTCCTGATCAT
194 AAATGA-AGCGATTTCCCGATCAT
* * * ** * *
1825 GGAATGCTCGAAAAATTAGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* ** * * * *
1890 AAAGAACTAGTCAATTTTTGACAAGTTC-GATATTTCATCCAAGAACCAAGAGAGAAAGAATTCT
66 AAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * **
1954 AATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTTTTACCA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
** * *
2018 AATGCTGCGATTTCTCGATAAT
195 AATGAAGCGATTTCCCGATCAT
* * * * * *
2040 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATGGTCTTGAATACTCTCAA-GAACCGAAGTTAT
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTAT
* * * * * * *
2104 AAAAGAACTTGTAAAA-GTTTGACTAGCTCATATGTTCGTCAAAGAACCAATAGGGAAATAATTC
65 AAAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * * * * * *
2168 TCACGTAAATAAGTATTTAATTCAAAGACTAAAATTTGTATACAAAATGATAAACTATTTAAATC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* **
2233 AAACGAAGCGATTTCCCGGGCAT
194 AAATGAAGCGATTTCCCGATCAT
* *
2256 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATTCTCTCAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTA
* * * * * * *
2319 TAAAAGAACTCT-TAAATGTTTAACCAGTTTAGAAGTTCGTCCAAGAACTAATAGAGAAACAATT
64 TAAAAGAACT-TGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATT
* * *
2383 CCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGAC
128 CTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
*
2448 CAAATGATA-CGATTTCCTGATCAT
193 CAAATGA-AGCGATTTCCCGATCAT
* * ** * * *
2472 GGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGAAGTTGTA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
2537 AAAGAACTAGTAAATGTTTGACAAGTTC-GATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCT
66 AAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * * ** *
2601 AAAGTAACAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTTTTACAA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
** * *
2665 AATGCTGCGATTTCTCGATAAT
195 AATGAAGCGATTTCCCGATCAT
* * * * *
2687 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAA-GAACCGAAGTTAT
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTAT
* ** * * * * * *
2751 AAAAGAACTTGTAAAA-GTTTGACTAGCCCATATGTTCGTCAAAGAACCAATAGGGAAAAAATTC
65 AAAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * * * * * * *
2815 TCACGTAAATAAGTATTTAATTCAAAGACTAAAAATTGTATAAAAAATGATAAACTATTTAAATC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* **
2880 AAAAGAAGCGATTTCCCGGGCAT
194 AAATGAAGCGATTTCCCGATCAT
*
2903 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTTAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTC-TAAGGAATCGAAGTTA
* ** * * * * *
2966 TAAAAGAACTCGAAAATGTTTGACGTGTTC-GAAAATTCATCCAAGAACAAATAGAGAAACAATT
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAATAATT
* * * *
3030 CCCACGTAAAAAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACGATTTAGAC
128 CTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
*
3095 CAAATGGTACGATTTCCACCAAATGGTACGATTTCCTGATCAT
193 CAAA---T--G----------AA--G--CGATTTCCCGATCAT
* * ** *
3138 GGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTC-ACAGGAATCGAAGTTGT
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTA-AGGAATCGAAGTTAT
* * * * *
3202 AAAAGAACTAGTAAATGTTTGACAAGTTCA-ATACTTCGTACAAGAACCAAGAGAGAAAGAATTC
65 AAAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * * * * * ** *
3266 TAATGTAACAAA-TTTTTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTTTTACA
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
** * *
3329 AAATGCTGCGATTTCTCGATAAT
194 AAATGAAGCGATTTCCCGATCAT
* * * * * * *
3352 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
** * * * * *
3417 AAAGAACTTGTAAAA-GTTTGAGTAGTTCATATGTTCGTCCAAGAACAAATAGGGAAATAATTCT
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * **
3481 CACGTAAATAAGTATTTAATTCAAAGACTAAAAATT-TTATACAAAATGATAAACTATTTAAATT
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTT-TACAAAATGACAAACTATTTAAACC
* *
3545 AAACGAAGCGATTTCCC-AGGCAT
194 AAATGAAGCGATTTCCCGA-TCAT
*
3568 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTTAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTC-TAAGGAATCGAAGTTA
* * ** * * *
3631 TAAAATAACTCGAAAATGTTTGACGTGTTC-GAAAGTTCATCCAAGAA-CAATTAGAGAAACAAT
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAA-GAGAGAAATAAT
* * *
3694 TCCCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACGATTTAGA
127 TCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAA
* *
3759 CCAAATGGTA-CGATTTCCTGATCAT
192 CCAAAT-GAAGCGATTTCCCGATCAT
* ** *
3784 GGAATGCTT-GAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTC-ACAGGAATCGAAGTTG
1 GGAATG-TTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTA-AGGAATCGAAGTTA
** * * * *
3847 TAAAAGAACAAGTAAATGTTTTACAAGTTCA-ATACTTCGTCCAAGAACCAAGAGAGAAAGAATT
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATT
* * * * * * * **
3911 CTAATGTAACAAAGTTTCTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTTTTAC
128 CTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
*** * * *
3975 CAAATTCTGTGATTTCTCGATAAT
193 CAAATGAAGCGATTTCCCGATCAT
* ** * * * * *
3999 GGAATCTTTAAAAAATTGGTCAAAGAAATGGATCGTGTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
4064 AAAGAACTTGTAAAA-GTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCT
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * ** *
4128 CACG-AAAATAAGTATTTAATTCAAAGACTAAAAATT-TATACAAACTGATTAACTATTTAAATC
130 CACGTAAAA-AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* * **
4191 AAACGAAGCGATTTCTCGGGCAT
194 AAATGAAGCGATTTCCCGATCAT
*
4214 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTTAA-GAATCGATA-TT
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTC-TAAGGAATCGA-AGTT
* * * * *
4276 ATAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
63 ATAAAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATT
* * *
4341 C-CAATGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA-TGGTTTAG
128 CTC-ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-ATTTAA
* * *
4404 ACCGACTGATA-CGATTTCCTGATCAT
191 ACCAAATGA-AGCGATTTCCCGATCAT
* * ** * *
4430 GGAATGCTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * * *
4495 AAAGAACTAGAAAATGTTTGACAAGTTC-GTTACTTCTTCCAAGAACCAAGAGAGAAAGAATTCT
66 AAAGAACTTGAAAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * * *
4559 AATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTT-TACAA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
** * *
4622 AATGCTGCGATTTCTCGATAAT
195 AATGAAGCGATTTCCCGATCAT
* * * * * * * *
4644 GGATTCTTCAAAAAATTGGTCAAAGAAATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
4709 AAAGAACTTGTAAAA-GTTTGACTAGTTCATATGTTGGTCCAAGAACCAAGAG-GAAAATAATTC
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AAATAATTC
* * * * * *
4772 TCACGTAAATAAGTATTTAATTCAAAGACTACAAA-TTGTATACAAAATGATAAACTATTTAAAT
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAAAC
** * **
4836 TGAACGAAGCGATTTCCCGGGCAT
193 CAAATGAAGCGATTTCCCGATCAT
* *
4860 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAGGAATCGAAGTTAT
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTAT
* * * *
4924 AAAAGAACTCGAAAATGTTTAACCAA-TTCAGAAGTTCGTCAAAGAATCAAGAGAGAAATAATTC
65 AAAAGAACTTGAAAATGTTTGA-CAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* *
4988 TCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
*
5053 AAATGATA-CGATTTCCTGATCAT
194 AAATGA-AGCGATTTCCCGATCAT
* * ** * *
5076 GGAATGCTCGAAAAATTGGTCGACA-GAATGGATCATCTTGGCTACTCTCAA-GAATTGAAGTTG
1 GGAATGTTCGAAAAATTGGTCGA-AGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTA
* * * *
5139 TAAAAGAACTTGTAAATGTTTGACAAGTTC-GATACTTCGTCCAGGAACCAAGAGAGAAAGAATT
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATT
* * * * * **
5203 CTAATGTAAAAAAGTTTTTAATTCAAAGACCAAAATTTATTTAC-AAATGGCAAACTATTTTTAC
128 CTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
********************
5267 CAAANNNNNNNNNNNNNNNNNNNNNNNN
193 CAAA----TGAAGCGATTTCCCGATCAT
****** * * * * *
5295 NNNNNNTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
5360 AAAGAACTTGTAAAA-GTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAATAATTCT
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * * * *
5424 CACGTAAATAAGTATTTATTTCAAAGACTAAAAATT-TATACAAAATGATAAACTATTTAAATCA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
* * **
5488 AATAAAGCGATTTCACGGGCAT
195 AATGAAGCGATTTCCCGATCAT
* *
5510 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATTCTCTCAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTA
* * * * * * *
5573 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAA-CTA-AGATAAACAATTC
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * *
5636 CCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGA-C
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
*
5700 AATATGATA-CGATTTCCTGATCAT
194 AA-ATGA-AGCGATTTCCCGATCAT
* * ** * * *
5724 GGAAAT-CTCGAAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAACCGAAGTTGT
1 GG-AATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTAT
* * * *
5788 AAAAGAACTAGTAAATGTTTGACAAGTTCA-ATACTTCGTCCAAGAACCAAGAGAGAAAGAATTC
65 AAAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * * * * * * **
5852 TAATGTAACAAAGTTTTTAATTCAAATACCAAAATTTATTTAC-AAATGGCAAACTATTTTTACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
** * *
5916 AAATGCTGCGATTTCTCGATAAT
194 AAATGAAGCGATTTCCCGATCAT
* * * * * *
5939 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * * * * *
6004 AAAGAAATTGTAAAA-GTTTGGCTAGTTCATATGTTCGCCCAAGAACCAAGAGGGAAATAATTCT
66 AAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * ** *
6068 CACG-AAAATAAGTATTTAATTCAAAGACTAAAAATT-TATACAAAATGATTAACTATTTAAATC
130 CACGTAAAA-AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* **
6131 AAACGAAGCGATTTCCCGGGCAT
194 AAATGAAGCGATTTCCCGATCAT
*
6154 GGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGTCTTTAATACTCTCAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTA
* * * * *
6217 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
** * * * *
6282 TCTGGTAAAAAAGTTTTTAACTCAAAGACCAAAAGTTGTTTACAACATGACTAACTATTTAGACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
*
6347 AAATGATA-CGATTTCCTGATCAT
194 AAATGA-AGCGATTTCCCGATCAT
* * * ** * *
6370 GGAATGCTCGGAAAATTGGTCGAAGGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
6435 AAAGAACTAGTAAATGTTTGACAAGTTC-GATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCT
66 AAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * * * * * ** *
6499 AATGTAAAAAAGTTTTCATTTCAAAGACCAAAATTTATTTAC-AAATG-GAAACTATTTTTACAA
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCA
** * *
6562 AATGCTGCGATTTCTCGATAAT
195 AATGAAGCGATTTCCCGATCAT
* * * * *
6584 GGAATCTTC-AAAAACTTGGTCAAAGAAATGGATCGTCTTGAATACTCTTAGGAACCGAAGTTAT
1 GGAATGTTCGAAAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTAT
* * * * *
6648 AAAAGAACTTGTAAAA-GTTTGACTAGTTCATATGTTCGTCCAAGAACCAATAGGGAAATAATTC
65 AAAAGAACTTG-AAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* * * * * **
6712 TCACGTAAATAAGTATTTAATTCAAAGACTAAAAATT-TATACAAAATGATTAACTATTTAAACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* **
6776 AAACGAAGCGATTTCCCGGGCAT
194 AAATGAAGCGATTTCCCGATCAT
* *
6799 GGAATGTTCGAAAAATTGG-CTGAAGGAATGAATCGTCTTTAATACTCTCAA-GAATCGAAGTTA
1 GGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGTCTTGAATACTCT-AAGGAATCGAAGTTA
* * * * ** * * *
6862 TAAAAGAACTCGTAAATGTTTAACCAGTTCAGAAGTTCGTCCTTGAACTAATAGAGAAACAATTC
64 TAAAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTC
* ** *
6927 CCACGTAAAAAAGTTTTTAATTCAAAGAATAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
129 TCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
* *
6992 AAATGATA-CGATTTACTGATCAT
194 AAATGA-AGCGATTTCCCGATCAT
* * * ** * *
7015 GGAATGCTCGAAAAATTGGTCGAATGAATGGATCATCTTGGCTACTCTCAGGAATCGAAGTTGTA
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
* * * *
7080 AAAGAACTAGTAAATGTTTGACAAGTTC-GATACTTCGTCCAAGAACCAAGAGAGAAAGAATTCT
66 AAAGAACTTGAAAATGTTTGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAAATAATTCT
* * * ** * **
7144 AATGTAAAAAAGTTTTTAATTCAGAGACCAAATTTTTTTTAC-AAATGGA-AAACTATTTTTACC
130 CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT-GACAAACTATTTAAACC
** * *
7207 AAATGCTGCGATTTCTCGATAAT
194 AAATGAAGCGATTTCCCGATCAT
* * * *
7230 GGAATCTTCAAAAAATTGGTCAAAGAAATGGATCGTCTTGAATACTC
1 GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTC
7277 AAAAGTTGTT
Statistics
Matches: 4529, Mismatches: 969, Indels: 341
0.78 0.17 0.06
Matches are distributed among these distances:
213 55 0.01
214 587 0.13
215 1414 0.31
216 2109 0.47
217 33 0.01
218 6 0.00
219 142 0.03
220 4 0.00
221 1 0.00
228 1 0.00
230 1 0.00
231 2 0.00
233 21 0.00
234 29 0.01
235 123 0.03
236 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
GGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTAAGGAATCGAAGTTATA
AAAGAACTTGAAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTC
ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAA
ATGAAGCGATTTCCCGATCAT
Found at i:3106 original size:19 final size:19
Alignment explanation
Indices: 3084--3128 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
3074 AAAATGACAA
*
3084 ACGATTTAGACCAAATGGT
1 ACGATTTACACCAAATGGT
*
3103 ACGATTTCCACCAAATGGT
1 ACGATTTACACCAAATGGT
3122 ACGATTT
1 ACGATTT
3129 CCTGATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (19 bp):
ACGATTTACACCAAATGGT
Found at i:3129 original size:19 final size:19
Alignment explanation
Indices: 3093--3130 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
3083 AACGATTTAG
3093 ACCAAATGGTACGATTTCC
1 ACCAAATGGTACGATTTCC
3112 ACCAAATGGTACGATTTCC
1 ACCAAATGGTACGATTTCC
3131 TGATCATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (19 bp):
ACCAAATGGTACGATTTCC
Found at i:8234 original size:80 final size:79
Alignment explanation
Indices: 8094--8258 Score: 251
Period size: 80 Copynumber: 2.1 Consensus size: 79
8084 TACAAACACT
* * * *
8094 AATTTCTTTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGT
1 AATTTCTTTTTAACTCTTGTAGGAAACCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGC
8159 TAAAAAGGCATGGC
66 TAAAAAGGCATGGC
*
8173 AATTTCATTTTTAACTCTTGTAGGAAACCCAATGAGTCATGTCTCTTCATTAGGATTTGATGTAG
1 AATTTC-TTTTTAACTCTTGTAGGAAACCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAG
* *
8238 CTGAAAAGGCATGAC
65 CTAAAAAGGCATGGC
8253 -ATTTCT
1 AATTTCT
8259 CCTTAATGAA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 1 0.01
79 11 0.14
80 66 0.85
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.37
Consensus pattern (79 bp):
AATTTCTTTTTAACTCTTGTAGGAAACCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGC
TAAAAAGGCATGGC
Found at i:8792 original size:48 final size:48
Alignment explanation
Indices: 8617--8790 Score: 258
Period size: 48 Copynumber: 3.6 Consensus size: 48
8607 GCATTTAACG
* *
8617 AAGATGCATTTAACAAACAAAACAGTTAATAATACATATTACTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACA
* * *
8665 AAGATGCATTTAACAAACCAAACAATTAACAATACAGATTACTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACA
* * * *
8713 AAGATGCATTTAACGAACAAAACACTTAATGATGCAGATTATTAAACA
1 AAGATGCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACA
*
8761 AAGATGCATTTAACAAAAAAAACACTTAAT
1 AAGATGCATTTAACAAACAAAACACTTAAT
8791 GAAGCATAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24
Consensus pattern (48 bp):
AAGATGCATTTAACAAACAAAACACTTAATAATACAGATTACTAAACA
Found at i:11327 original size:6 final size:6
Alignment explanation
Indices: 11316--11343 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
11306 ATTGAATGAG
11316 CATCTC CATCTC CATCTC CATCTC CATC
1 CATCTC CATCTC CATCTC CATCTC CATC
11344 AACTGATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.50, G:0.00, T:0.32
Consensus pattern (6 bp):
CATCTC
Done.