Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013255.1 Kokia drynarioides strain JFW-HI SEQ_128275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10676
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5998 original size:23 final size:23

Alignment explanation


    Indices: 5963--6006  Score: 54
    Period size: 22  Copynumber: 1.9  Consensus size: 23

       5953 TGCCAGAGTG

                            *       
       5963 ATACTCACATCGAGAATTGGCATC
          1 ATACTCACATCGA-AAATGGCATC

                    *            
       5987 ATAC-CACTTCGAAAATGGCA
          1 ATACTCACATCGAAAATGGCA

       6007 GTAGAATTGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22    7  0.39
  23    7  0.39
  24    4  0.22

ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23


Consensus pattern (23 bp):   
ATACTCACATCGAAAATGGCATC

Found at i:8874 original size:3 final size:3

Alignment explanation


    Indices: 8868--8903  Score: 72
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       8858 AAAATAAATA

                                                           
       8868 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

       8904 TTGGGCCTTT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.