Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001326.1 Kokia drynarioides strain JFW-HI SEQ_112761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6200
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35


Found at i:5870 original size:12 final size:12

Alignment explanation


    Indices: 5853--5895  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       5843 TGTAAAAGAC

                        
       5853 ATAAAATAAAAG
          1 ATAAAATAAAAG

                       *
       5865 ATAAAATAAAAT
          1 ATAAAATAAAAG

                         
       5877 AGT-AAATAAAAG
          1 A-TAAAATAAAAG

                    
       5889 A-AAAATA
          1 ATAAAATA

       5896 TTGAGTTGTA


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  11    5  0.19
  12   21  0.78
  13    1  0.04

ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19


Consensus pattern (12 bp):   
ATAAAATAAAAG
Done.