genome.fa.s13265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013265.1 Kokia drynarioides strain JFW-HI SEQ_128286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200944

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5009--5060	26	2.0	26	100	0	104	19	19	19	42	1.90
6187--6222	6	6.0	6	96	0	63	63	0	33	2	1.08
7730--7759	15	2.1	14	93	6	51	13	23	36	26	1.92
21947--21979	2	16.5	2	100	0	66	0	0	48	51	1.00
24105--24154	21	2.4	21	82	0	64	8	42	4	46	1.52
24246--24286	15	2.7	15	80	0	55	4	34	34	26	1.78
26398--26459	31	1.9	33	83	9	83	45	3	1	50	1.27
26397--26469	31	2.2	31	78	9	74	46	2	1	49	1.24
27596--27665	33	2.2	31	85	10	88	30	12	7	50	1.67
31568--31625	20	2.8	20	75	12	64	43	0	3	53	1.17
32663--32702	20	2.0	20	85	0	53	35	2	5	57	1.34
35176--35215	20	2.0	21	90	5	64	40	2	7	50	1.44
35495--35539	19	2.3	20	81	14	58	44	8	15	31	1.77
49570--49629	28	2.1	29	87	9	88	31	3	1	63	1.20
49760--49838	20	3.9	20	73	8	61	36	2	3	56	1.31
49982--50015	12	2.8	12	90	0	50	23	20	11	44	1.84
58813--58862	26	1.9	26	87	0	73	56	12	6	26	1.58
61665--61693	14	2.1	14	100	0	58	24	0	0	75	0.80
72656--72696	19	2.1	19	86	13	57	34	0	0	65	0.93
73761--73791	15	2.1	15	100	0	62	35	32	12	19	1.90
73917--73941	6	4.2	6	100	0	50	0	16	52	32	1.44
75445--75671	84	2.7	84	91	1	357	39	15	20	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84289--84338	25	2.0	26	84	11	68	12	16	2	70	1.26
86465--86501	19	1.9	19	88	0	56	21	0	13	64	1.27
91069--91102	16	2.2	16	89	5	52	64	2	0	32	1.08
105672--105705	14	2.5	13	86	9	50	47	0	0	52	1.00
105674--105705	13	2.4	13	94	5	55	50	0	0	50	1.00
105655--105729	34	2.2	34	80	4	89	49	1	0	49	1.09
106832--106874	22	2.0	22	90	4	70	53	0	0	46	1.00
107500--107558	20	3.0	20	71	14	59	50	3	3	42	1.35
109598--109636	15	2.4	16	87	8	53	35	2	0	61	1.10
112736--112807	23	3.1	23	77	2	63	47	15	26	11	1.78
117660--117756	48	2.0	48	100	0	194	25	20	22	30	1.98
121501--121552	20	2.6	20	82	14	63	51	5	0	42	1.25
129484--129616	36	3.7	36	86	0	176	25	14	19	40	1.89
129627--129707	36	2.2	36	88	0	117	25	18	19	35	1.95
129528--130194	93	6.9	93	74	12	503	28	15	18	37	1.92
129885--130023	57	2.4	57	93	0	242	28	13	18	38	1.89
129484--130493	293	3.4	292	79	9	940	28	14	18	38	1.90
129983--130508	174	3.1	174	80	9	634	28	14	18	38	1.90
129714--130305	36	16.5	36	80	8	541	28	15	18	37	1.91
130253--130362	57	1.9	57	88	0	166	28	14	17	40	1.89
130310--130508	36	5.6	35	82	8	208	29	13	16	40	1.87
130340--130473	68	2.0	68	89	0	205	29	15	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130310--130502	104	1.9	104	89	0	305	29	13	16	40	1.87
133954--133984	14	2.2	14	94	0	53	51	0	0	48	1.00
134828--134873	18	2.6	18	83	12	60	54	2	6	36	1.39
140204--140233	2	15.0	2	100	0	60	50	0	50	0	1.00
142558--142645	27	3.2	28	83	12	78	31	0	4	63	1.14
142561--142620	19	3.3	18	78	17	70	33	0	3	63	1.11
142558--142636	9	8.4	9	76	18	65	31	0	5	63	1.16
143683--143752	17	4.1	17	76	7	70	42	1	2	52	1.24
143797--143876	15	5.3	15	72	8	63	36	27	12	23	1.91
144348--144398	15	3.4	15	70	8	50	54	3	3	37	1.37
145592--145937	29	12.0	29	71	18	233	34	30	4	30	1.77
145571--145935	57	6.3	58	84	7	440	35	29	4	30	1.76
145591--145925	115	2.9	114	86	6	462	35	30	4	30	1.77
147087--147156	29	2.4	30	77	15	83	48	0	1	50	1.09
163287--163319	16	2.1	16	100	0	66	18	18	12	51	1.76
168861--168921	12	5.1	12	83	0	68	13	40	0	45	1.43
168862--168919	18	3.2	18	90	0	89	13	41	0	44	1.44
170515--170565	22	2.2	24	83	13	63	50	1	0	47	1.12
174667--174716	25	2.0	25	81	14	59	44	6	4	46	1.47
174787--174829	19	2.2	20	87	4	61	69	4	0	25	1.07
183305--183336	7	4.6	7	100	0	64	87	0	12	0	0.54
183446--183701	127	2.0	127	96	0	476	28	23	7	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192392--192448	30	1.9	30	85	0	78	38	12	15	33	1.85

Tables:   1

The End!