genome.fa.s13267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013267.1 Kokia drynarioides strain JFW-HI SEQ_128288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110180

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1192--1350	78	2.0	78	100	0	318	32	21	10	35	1.87
8651--8690	21	1.9	21	89	0	62	50	2	0	47	1.14
10466--10510	19	2.4	19	81	7	56	37	0	4	57	1.19
11325--11367	21	2.0	21	90	4	68	16	6	4	72	1.24
12746--12939	97	2.0	97	80	6	214	39	13	16	30	1.88
13375--13573	59	3.4	59	83	6	217	36	3	24	36	1.71
13318--13542	30	7.6	30	75	16	152	37	2	22	37	1.67
13313--13585	29	9.3	29	72	14	134	36	2	23	36	1.69
14670--14707	3	12.3	3	88	5	58	34	0	0	65	0.93
14662--14707	22	2.1	22	95	0	83	34	2	0	63	1.07
15333--15391	26	2.3	26	77	8	68	13	11	30	44	1.80
15455--15547	6	16.0	6	71	18	72	54	2	1	41	1.19
15455--15547	17	5.4	17	87	7	134	54	2	1	41	1.19
15455--15547	35	2.7	34	90	6	134	54	2	1	41	1.19
15457--15529	11	6.8	11	76	19	66	56	1	1	41	1.16
15951--16891	206	4.6	206	89	1	1388	23	23	19	34	1.97
15876--16891	412	2.5	411	89	2	1529	23	23	18	34	1.96
17000--17143	39	3.7	39	71	5	121	26	20	28	25	1.99
16958--17182	78	2.9	77	84	5	274	24	18	30	27	1.98
17540--17960	49	8.5	49	72	5	256	15	27	19	37	1.92
17535--17822	100	2.9	99	79	10	336	14	26	19	39	1.90
17694--17960	146	1.8	149	82	5	346	15	26	19	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17841--18067	100	2.3	100	85	0	312	17	24	19	38	1.93
19289--19320	15	2.2	15	94	5	57	25	0	0	75	0.81
19288--19320	14	2.2	16	84	15	52	24	0	0	75	0.80
19324--19358	12	2.8	12	91	4	52	2	11	2	82	0.88
25036--25178	29	4.9	28	73	11	108	39	2	22	35	1.69
25102--25188	30	2.9	31	83	11	117	42	2	19	35	1.64
26325--26365	3	14.3	3	89	5	59	31	0	0	68	0.90
26314--26366	25	2.1	25	96	0	97	30	1	0	67	1.01
26325--26367	22	2.0	22	95	0	77	32	0	0	67	0.91
27095--27170	18	4.4	17	82	11	91	52	2	1	43	1.23
32471--32533	31	2.1	31	87	3	92	33	11	12	42	1.78
39875--39942	22	3.3	22	61	23	56	42	25	2	29	1.69
39842--39949	40	2.7	40	95	1	191	43	24	4	27	1.74
41616--41714	53	1.9	52	85	6	139	61	1	1	36	1.10
41620--41712	43	2.1	44	83	11	120	61	1	1	36	1.10
41678--41711	18	1.9	17	88	5	50	58	0	0	41	0.98
41620--41715	26	3.8	26	75	16	85	60	1	1	37	1.11
41815--41839	12	2.1	12	100	0	50	76	0	0	24	0.80
47318--47346	6	5.0	6	91	8	51	34	0	0	65	0.93
47318--47346	11	2.5	12	94	5	51	34	0	0	65	0.93
47508--47560	25	2.1	25	100	0	106	64	22	5	7	1.41
50336--50448	60	1.9	60	84	0	154	45	16	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75789--75965	90	2.0	90	87	2	257	35	19	14	31	1.91
77912--78011	23	4.3	23	83	2	94	13	22	19	46	1.83
81476--81524	15	3.3	15	79	0	62	12	28	2	57	1.46
84709--84750	22	1.9	22	85	0	57	61	0	4	33	1.17
108381--108451	4	17.5	4	82	8	81	66	0	33	0	0.92
108381--108451	17	4.4	17	82	7	94	66	0	33	0	0.92
108492--108535	19	2.4	18	81	7	52	31	2	2	63	1.19

Tables:   1

The End!