genome.fa.s13271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013271.1 Kokia drynarioides strain JFW-HI SEQ_128292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132133

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797--830	3	11.3	3	100	0	68	67	0	0	32	0.91
4684--4719	17	2.1	18	89	5	56	44	0	0	55	0.99
26642--26892	138	1.8	138	80	5	301	20	22	14	42	1.88
37588--37805	30	7.4	29	71	19	125	29	2	27	39	1.71
37551--37877	59	5.6	58	81	7	331	33	4	26	35	1.77
37570--37840	29	9.2	30	77	15	255	30	3	29	36	1.75
45667--45904	81	3.0	81	83	6	304	29	26	22	21	1.99
51811--51845	2	17.5	2	93	0	61	54	0	45	0	0.99
54671--54699	6	4.8	6	100	0	58	34	0	65	0	0.93
55368--55413	9	5.4	9	80	12	53	67	2	0	30	1.03
69457--69482	2	13.0	2	100	0	52	50	50	0	0	1.00
69816--69845	2	15.0	2	100	0	60	50	50	0	0	1.00
71868--71911	23	2.0	23	86	8	65	27	0	6	65	1.17
79977--80006	15	1.9	16	93	6	53	63	0	0	36	0.95
82761--82790	6	5.2	6	92	8	53	30	0	70	0	0.88
89312--89347	17	2.2	16	90	5	54	30	0	0	69	0.89
89336--89389	28	1.9	28	85	7	74	38	0	1	59	1.08
99824--99893	3	23.3	3	88	0	68	54	0	37	8	1.31
99804--99898	12	7.9	12	76	2	75	51	0	37	10	1.37
105475--105536	30	2.1	30	100	0	124	46	9	12	30	1.74
105859--105892	18	1.9	17	88	5	50	29	8	29	32	1.87
111069--111130	23	2.7	23	79	0	61	20	17	16	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114401--114433	17	2.0	16	94	5	57	0	30	0	69	0.88
116565--116597	3	11.0	3	100	0	66	33	0	0	66	0.92
118605--118891	29	9.8	29	69	22	133	35	4	27	32	1.77
118607--118918	59	5.3	58	79	10	284	36	3	27	32	1.75
118652--118957	29	10.4	29	74	15	227	35	3	26	33	1.74
118700--118988	30	9.8	29	74	14	139	37	3	24	34	1.74
118811--118978	58	2.9	58	83	4	187	38	2	23	35	1.70
120008--120064	21	2.8	19	73	23	53	38	3	1	56	1.27
120030--120064	18	1.9	18	88	0	52	37	2	2	57	1.29
119988--120066	24	3.2	23	75	10	68	39	3	1	55	1.26
120827--120869	17	2.6	16	85	10	59	58	4	2	34	1.32
120836--120887	23	2.2	24	82	3	70	55	5	3	34	1.42
120791--120873	6	14.0	6	69	14	57	49	3	2	44	1.32
120844--120897	12	4.8	11	78	10	56	59	3	1	35	1.26
121242--122763	206	7.4	206	90	0	2256	23	22	18	36	1.95
122874--123087	39	5.5	39	70	16	165	22	16	33	27	1.96
122874--123082	78	2.7	78	89	1	312	22	17	33	26	1.96
123149--123350	101	2.0	101	85	0	269	29	17	16	36	1.92
123494--123664	49	3.5	48	72	12	132	15	25	19	40	1.90
123494--123681	50	3.8	47	71	11	135	14	24	20	40	1.90
124226--124481	106	2.4	106	91	0	413	42	9	22	25	1.83
124991--125040	18	2.6	19	79	20	59	0	18	4	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125007--125040	13	2.8	12	86	8	50	0	17	2	79	0.86
125931--125974	12	3.5	12	79	11	52	4	0	11	84	0.77
130674--130754	29	2.8	29	72	12	76	38	4	28	28	1.78
130718--130969	58	4.3	59	82	7	257	36	1	25	36	1.66
130716--131041	29	11.1	29	73	14	224	37	1	25	35	1.66
132074--132107	15	2.2	16	94	5	61	44	0	0	55	0.99

Tables:   1

The End!