Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013273.1 Kokia drynarioides strain JFW-HI SEQ_128294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132303
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Warning! 309 characters in sequence are not A, C, G, or T
Found at i:4955 original size:39 final size:39
Alignment explanation
Indices: 4830--5076 Score: 225
Period size: 39 Copynumber: 6.4 Consensus size: 39
4820 ACTAAGTAAG
* * * *
4830 CAGTGACACTGTAAACAATGCGGAACTATAC-AAACCGG
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
* * * ** * *
4868 TAGCGACATTGTAAACACTGCGAAGTTATATTGAA-AG-
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
* *
4905 CAGTGATACTGTAAACACTACGAAACTATACTGAACCGA
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
* *
4944 CAGTGACACTGTAAACACTGTGAAACTATACTGAACCGG
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
* * * *
4983 CAGTGACATTGTAAACACTACG-AACTATACTAAACCAA
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
* * * **
5021 CAGTGACACTATAAACACTGTGAAGCTATACTG-ACTTA
1 CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
*
5059 GCAGTGACACTATAAACA
1 -CAGTGACACTGTAAACA
5077 TCGCACGACT
Statistics
Matches: 167, Mismatches: 37, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
37 27 0.16
38 59 0.35
39 81 0.49
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (39 bp):
CAGTGACACTGTAAACACTGCGAAACTATACTGAACCGA
Found at i:5036 original size:77 final size:78
Alignment explanation
Indices: 4829--5076 Score: 245
Period size: 77 Copynumber: 3.2 Consensus size: 78
4819 TACTAAGTAA
* * * *** * * * * *
4829 GCAGTGACACTGTAAACAATGCGGAACTATAC-AAACCGGTAGCGACATTGTAAACACTGCGAAG
1 GCAGTGACACTGTAAACACTACGAAACTATACTAAACCAACAGTGACACTATAAACACTGTGAAA
* * *
4893 TTATATTGAA--A
66 CTATACTGAACCG
* * * *
4904 GCAGTGATACTGTAAACACTACGAAACTATACTGAACCGACAGTGACACTGTAAACACTGTGAAA
1 GCAGTGACACTGTAAACACTACGAAACTATACTAAACCAACAGTGACACTATAAACACTGTGAAA
4969 CTATACTGAACCG
66 CTATACTGAACCG
* *
4982 GCAGTGACATTGTAAACACTACG-AACTATACTAAACCAACAGTGACACTATAAACACTGTGAAG
1 GCAGTGACACTGTAAACACTACGAAACTATACTAAACCAACAGTGACACTATAAACACTGTGAAA
**
5046 CTATACTG-ACTTA
66 CTATACTGAAC-CG
*
5059 GCAGTGACACTATAAACA
1 GCAGTGACACTGTAAACA
5077 TCGCACGACT
Statistics
Matches: 145, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
75 28 0.19
76 35 0.24
77 61 0.42
78 21 0.14
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (78 bp):
GCAGTGACACTGTAAACACTACGAAACTATACTAAACCAACAGTGACACTATAAACACTGTGAAA
CTATACTGAACCG
Found at i:5089 original size:39 final size:39
Alignment explanation
Indices: 5021--5117 Score: 92
Period size: 39 Copynumber: 2.5 Consensus size: 39
5011 ACTAAACCAA
* * *
5021 CAGTGACACTATAAACACTGTGAAGCTAT-ACTGACTTAG
1 CAGTGACACTATAAACACTGTCAAGCTATAACTCA-ATAG
*
5060 CAGTGACACTATAAACA-TCG-CACGACTATAACTCAATAG
1 CAGTGACACTATAAACACT-GTCAAG-CTATAACTCAATAG
* *
5099 TAGTGACACTGTAAACACT
1 CAGTGACACTATAAACACT
5118 ACTAGAATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
38 3 0.06
39 40 0.83
40 5 0.10
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (39 bp):
CAGTGACACTATAAACACTGTCAAGCTATAACTCAATAG
Found at i:14181 original size:78 final size:75
Alignment explanation
Indices: 14048--14223 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 75
14038 AGATACTGAG
* *
14048 TAAGCAGTGACACTGTAAACACTGTAGTATACTAAACCGGCAGTGACACTATAAACACTGCGAAG
1 TAAGCAGTGACACTATAAACACTGTAGTATACTAAACCGACAGTGACACTATAAACACTGCGAAG
14113 TTATACCAAA
66 TTATACCAAA
* * *
14123 TAAGTAGTGACACTATAAACACTGTAGAACTATACTGAACCGACAGTGACACTGTAAACACTGCG
1 TAAGCAGTGACACTATAAACACTGTAG---TATACTAAACCGACAGTGACACTATAAACACTGCG
* * * *
14188 AAGCTATGCTAAC
63 AAGTTATACCAAA
** *
14201 TTGGCAGTGACACTCTAAACACT
1 TAAGCAGTGACACTATAAACACT
14224 ACAATGTTAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
75 25 0.29
78 60 0.71
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (75 bp):
TAAGCAGTGACACTATAAACACTGTAGTATACTAAACCGACAGTGACACTATAAACACTGCGAAG
TTATACCAAA
Found at i:14209 original size:39 final size:39
Alignment explanation
Indices: 14051--14223 Score: 158
Period size: 39 Copynumber: 4.5 Consensus size: 39
14041 TACTGAGTAA
* *
14051 GCAGTGACACTGTAAACACT--GTAG-TATACTAAACCG
1 GCAGTGACACTATAAACACTGCGAAGCTATACTAAACCG
* * ***
14087 GCAGTGACACTATAAACACTGCGAAGTTATACCAAATAA
1 GCAGTGACACTATAAACACTGCGAAGCTATACTAAACCG
* * *
14126 GTAGTGACACTATAAACACTGTAGAA-CTATACTGAACCG
1 GCAGTGACACTATAAACACTG-CGAAGCTATACTAAACCG
* * * *
14165 ACAGTGACACTGTAAACACTGCGAAGCTATGCT-AACTTG
1 GCAGTGACACTATAAACACTGCGAAGCTATACTAAAC-CG
*
14204 GCAGTGACACTCTAAACACT
1 GCAGTGACACTATAAACACT
14224 ACAATGTTAT
Statistics
Matches: 109, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
36 19 0.17
38 9 0.08
39 78 0.72
40 3 0.03
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (39 bp):
GCAGTGACACTATAAACACTGCGAAGCTATACTAAACCG
Found at i:15791 original size:30 final size:29
Alignment explanation
Indices: 15751--15892 Score: 124
Period size: 30 Copynumber: 4.8 Consensus size: 29
15741 TTGGAGGGTT
15751 AAAATGTGATTTTAGGAAAGTTTGGAGATC
1 AAAATGTGATTTTAGGAAAGTTTGG-GATC
* * * * *
15781 AAAACGTGATTTTAAGAAAATTTGGGGTT
1 AAAATGTGATTTTAGGAAAGTTTGGGATC
* * *
15810 AAAATGTGATTTTGGGAAAGTTTAGGGGTT
1 AAAATGTGATTTTAGGAAAGTTT-GGGATC
* * * *
15840 AAAATGTAATTTTAGAAAAGTTTAAGGTTC
1 AAAATGTGATTTTAGGAAAGTTT-GGGATC
*
15870 AAAATGT-ATTTTTGGAGAAGTTT
1 AAAATGTGATTTTAGGA-AAGTTT
15893 AAGGGTTAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
29 28 0.30
30 65 0.70
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (29 bp):
AAAATGTGATTTTAGGAAAGTTTGGGATC
Found at i:15891 original size:60 final size:59
Alignment explanation
Indices: 15713--15911 Score: 197
Period size: 59 Copynumber: 3.3 Consensus size: 59
15703 TGAAAAATTT
* *
15713 GGGGTTAAAATGTAATTTTGAAAAAAAATTGGAGGGTTAAAATGTGATTTTAGGAAAGTTT-
1 GGGGTTAAAATGTAATTTT--AAGAAAATT-TAGGGTTAAAATGTGATTTTAGGAAAGTTTA
* * * * * *
15774 GGAGATCAAAACGTGATTTTAAGAAAATTTGGGGTTAAAATGTGATTTTGGGAAAGTTTA
1 GG-GGTTAAAATGTAATTTTAAGAAAATTTAGGGTTAAAATGTGATTTTAGGAAAGTTTA
* *
15834 GGGGTTAAAATGTAATTTT-AGAAAAGTTTAAGGTTCAAAATGT-ATTTTTGGAGAAGTTTA
1 GGGGTTAAAATGTAATTTTAAGAAAA-TTTAGGGTT-AAAATGTGATTTTAGGA-AAGTTTA
* * *
15894 AGGGTTAGAATGCAATTT
1 GGGGTTAAAATGTAATTT
15912 CAAAGTTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
58 6 0.05
59 55 0.48
60 39 0.34
61 2 0.02
62 13 0.11
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (59 bp):
GGGGTTAAAATGTAATTTTAAGAAAATTTAGGGTTAAAATGTGATTTTAGGAAAGTTTA
Found at i:15893 original size:30 final size:28
Alignment explanation
Indices: 15747--15905 Score: 102
Period size: 30 Copynumber: 5.4 Consensus size: 28
15737 AAAATTGGAG
* *
15747 GGTTAAAATGTGATTTTAGGAAAGTTTGGA
1 GGTTAAAATGT-ATTTTTGGAAAGTTT-AA
* * * ** * **
15777 GATCAAAACGTGATTTTAAGAAAATTTGG
1 GGTTAAAATGT-ATTTTTGGAAAGTTTAA
* *
15806 GGTTAAAATGTGATTTTGGGAAAGTTTAGG
1 GGTTAAAATGT-ATTTTTGGAAAGTTTA-A
* *
15836 GGTTAAAATGTAATTTTAGAAAAGTTTAA
1 GGTTAAAATGT-ATTTTTGGAAAGTTTAA
15865 GGTTCAAAATGTATTTTTGGAGAAGTTTAA
1 GGTT-AAAATGTATTTTTGGA-AAGTTTAA
*
15895 GGGTTAGAATG
1 -GGTTAAAATG
15906 CAATTTCAAA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
29 33 0.31
30 68 0.65
31 4 0.04
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (28 bp):
GGTTAAAATGTATTTTTGGAAAGTTTAA
Found at i:15950 original size:30 final size:29
Alignment explanation
Indices: 15915--16043 Score: 100
Period size: 30 Copynumber: 4.3 Consensus size: 29
15905 GCAATTTCAA
*
15915 AGTTTGGGGATCAAAATACAATTTTGAAAG
1 AGTTTGGGG-TCAAAATACAATTTTAAAAG
*
15945 AGTTTGGTGGTCAAAATGA-AATTTTAAAAA
1 AGTTTGG-GGTCAAAAT-ACAATTTTAAAAG
* * * * *
15975 AGGTTGAGGGTTAAAATATAGTTTTGGAAA-
1 AGTTTG-GGGTCAAAATACAATTTT-AAAAG
* *
16005 AGTTTGAGGGTCAAAATGCAATTATAAAAG
1 AGTTTG-GGGTCAAAATACAATTTTAAAAG
*
16035 AGTTCGGGG
1 AGTTTGGGG
16044 GCCTTTAAGG
Statistics
Matches: 79, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
29 7 0.09
30 65 0.82
31 7 0.09
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.30
Consensus pattern (29 bp):
AGTTTGGGGTCAAAATACAATTTTAAAAG
Found at i:16628 original size:22 final size:22
Alignment explanation
Indices: 16601--16645 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
16591 TAAAATCAAA
* * *
16601 ATTATTTTCATTTTATTTGGTT
1 ATTATTTTAATTGTATTTAGTT
16623 ATTATTTTAATTGTATTTAGTT
1 ATTATTTTAATTGTATTTAGTT
16645 A
1 A
16646 AAAAATTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.64
Consensus pattern (22 bp):
ATTATTTTAATTGTATTTAGTT
Found at i:18195 original size:85 final size:85
Alignment explanation
Indices: 18050--18209 Score: 248
Period size: 85 Copynumber: 1.9 Consensus size: 85
18040 TTGCTTCTTT
* * *
18050 GATTTGGTCTACTTCTTTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCCACTTCTTTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
18115 TGTATCTCATTAGAAAGGAA
66 TGTATCTCATTAGAAAGGAA
* * * * *
18135 GATTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTT
1 GATTTGGTCCACTTCTTTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
18200 TGTATCTCAT
66 TGTATCTCAT
18210 CAAAAAGATA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 67 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (85 bp):
GATTTGGTCCACTTCTTTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
TGTATCTCATTAGAAAGGAA
Found at i:18295 original size:209 final size:209
Alignment explanation
Indices: 17928--18763 Score: 1075
Period size: 209 Copynumber: 4.0 Consensus size: 209
17918 AACTTCATCT
* * * * * ** * * *
17928 TTTGGTTCACTTCTCTGTATCTCATTAGGAAGATGATCACTTTATTATTTTGACCTATTTCTCAG
1 TTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTG
* * * * * *
17993 TATCTCATCAGGAATAT-GGGCATTTGAAGTTTCACTCGCATTGAGCTTTGCTTC-TTTGATTTG
66 TATCTCATCAAGAAGATAGGG-GTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTT-AATTG
* *
18056 GTCTACTTCTTTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATC
129 GTCTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATC
*
18121 TCAT-TAGAAAGGA-AGA
194 TCATCAAG-AA-GACAGA
* *
18137 TTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTTTG
1 TTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTG
* * * *
18202 TATCTCATCAAAAAGATAAGGGTTTGAATTTTCACTCACATTGGGCTTCGCTTCATTTAATTGGT
66 TATCTCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTAATTGGT
18267 CTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
131 CTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
*
18332 ATCAAGAAGACGGA
196 ATCAAGAAGACAGA
* * * *
18346 TTTGGTCTACTTCTCTATATCTTATCAAGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTG
1 TTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTG
* *
18411 TATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGATTCGCTTCA-TT-A---GT
66 TATCTCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTAATTGGT
* * * *
18471 CTACTTCTTTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATTTC
131 CTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
18536 ATCAAGAAGAC-GAA
196 ATCAAGAAGACAG-A
* * *
18550 TTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGACTCACTTC-CTT
1 TTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC-T
** *
18614 GTATCTCATCAAGAAGACGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTTAATTGG
65 GTATCTCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTAATTGG
* * * * *
18679 TCCACTTCTTTGTATCTCATC-AGAAAGATGATCACTTTATTGATTTAATCCACTTCTTTGTATC
130 TCTACTTCTTTGTATCTCATCAAG-AAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATC
* * *
18743 TCATTAGGAAGATAGA
194 TCATCAAGAAGACAGA
18759 TTTGG
1 TTTGG
18764 AGTTTCACTC
Statistics
Matches: 550, Mismatches: 64, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
203 2 0.00
204 183 0.33
205 2 0.00
206 1 0.00
207 1 0.00
208 6 0.01
209 347 0.63
210 8 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (209 bp):
TTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTG
TATCTCATCAAGAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTAATTGGT
CTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
ATCAAGAAGACAGA
Found at i:18405 original size:85 final size:85
Alignment explanation
Indices: 18262--18426 Score: 258
Period size: 85 Copynumber: 1.9 Consensus size: 85
18252 CTTCATTTAA
* * *
18262 TTGGTCTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGT
1 TTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTCTGT
18327 ATCTCATCAAGAAGACGGAT
66 ATCTCATCAAGAAGACGGAT
* * * * *
18347 TTGGTCTACTTCTCTATATCTTATCAAGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
1 TTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTCTGT
18412 ATCTCATCAAGAAGA
66 ATCTCATCAAGAAGA
18427 TGGGGGTTTG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (85 bp):
TTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCGCTTCATTGATTTAACCCACTTCTCTGT
ATCTCATCAAGAAGACGGAT
Found at i:18617 original size:85 final size:85
Alignment explanation
Indices: 18473--18632 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
18463 TCATTAGTCT
* * *
18473 ACTTCTTTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATTTCAT
1 ACTTCTCTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTGATCCACTTCTCTGTATCTCAT
18538 CAAGAAGACGAATTTGGTTC
66 CAAGAAGACGAATTTGGTTC
* * *
18558 ACTTCTCTGTATCTCATCAAGAAGATGA-TCGCTTTATTGCTTTGA-CTCACTTC-CTTGTATCT
1 ACTTCTCTGTATCTCATCAAGAAGACGACT-GCTTCATTGATTTGATC-CACTTCTC-TGTATCT
18620 CATCAAGAAGACG
63 CATCAAGAAGACG
18633 GGGGTTTGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
84 3 0.05
85 63 0.95
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (85 bp):
ACTTCTCTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTGATCCACTTCTCTGTATCTCAT
CAAGAAGACGAATTTGGTTC
Found at i:18709 original size:413 final size:415
Alignment explanation
Indices: 17928--18746 Score: 1137
Period size: 413 Copynumber: 2.0 Consensus size: 415
17918 AACTTCATCT
* * * * * * *
17928 TTTGGTTCACTTCTCTGTATCTCATTAGGAAGATGATCACTTTATTATTTTGACCTATTTCTCAG
1 TTTGGTTCACTTCTCTATATCTCATCAAGAAGATGACCACTTTATTACTTTGACCCACTTCTCAG
* * * * * *
17993 TATCTCATCAGGAATATGGGCATTTGAAGTTTCACTCGCATTGAGCTTTGCTTCTTTGATTTGGT
66 TATCTCATCAAGAAGATGGGCATTTGAAGTTTCACTCACATTGAGATTCGCTTC--T-ATTTAGT
* *
18058 CTACTTCTTTATATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
128 CTACTTCTTTATATCTCATCAAGAAGACGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTC
* * *
18123 ATTAGAAAGGAAGATTTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTT
193 ATAAGAAACGAAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTT
* * * *
18188 GACCCACTTCTTTGTATCTCATCAAAAAGATAAGGGTTTGAATTTTCACTCACATTGGGCTTCGC
258 GACCCACTTCCTTGTATCTCATCAAAAAGACAAGGGTTTGAAGTTTCACTCACATTGAGCTTCGC
* *
18253 TTCATTTAATTGGTCTACTTCTTTGTATCTCATCAAGAAGATGACCGCTTCATTGATTTAATCCA
323 TTCATTTAATTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCACTTCATTGATTTAATCCA
18318 CTTCTCTGTATCTCATCAAGAAGACGGA
388 CTTCTCTGTATCTCATCAAGAAGACGGA
* * * *
18346 TTTGG-TCTACTTCTCTATATCTTATCAAGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCT
1 TTTGGTTC-ACTTCTCTATATCTCATCAAGAAGATGACCACTTTATTACTTTGACCCACTTCTCA
**
18410 GTATCTCATCAAGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGATTCGCTTC-A-TTAGTCT
65 GTATCTCATCAAGAAGATGGGCATTTGAAGTTTCACTCACATTGAGATTCGCTTCTATTTAGTCT
* * * *
18473 ACTTCTTTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATTTCAT
130 ACTTCTTTATATCTCATCAAGAAGACGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCAT
* *
18538 CAAGAAGACG-A-ATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTT
195 -AAGAA-ACGAAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTT
* * ** *
18601 GACTCACTTCCTTGTATCTCATCAAGAAGACGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGC
258 GACCCACTTCCTTGTATCTCATCAAAAAGACAAGGGTTTGAAGTTTCACTCACATTGAGCTTCGC
* *
18666 TTCATTTAATTGGTCCACTTCTTTGTATCTCATC-AGAAAGATGATCACTTTATTGATTTAATCC
323 TTCATTTAATTGGTCCACTTCTTTGTATCTCATCAAG-AAGATGACCACTTCATTGATTTAATCC
*
18730 ACTTCTTTGTATCTCAT
387 ACTTCTCTGTATCTCAT
18747 TAGGAAGATA
Statistics
Matches: 353, Mismatches: 44, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
412 2 0.01
413 243 0.69
414 6 0.02
415 2 0.01
417 2 0.01
418 98 0.28
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (415 bp):
TTTGGTTCACTTCTCTATATCTCATCAAGAAGATGACCACTTTATTACTTTGACCCACTTCTCAG
TATCTCATCAAGAAGATGGGCATTTGAAGTTTCACTCACATTGAGATTCGCTTCTATTTAGTCTA
CTTCTTTATATCTCATCAAGAAGACGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATA
AGAAACGAAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGAC
CCACTTCCTTGTATCTCATCAAAAAGACAAGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTC
ATTTAATTGGTCCACTTCTTTGTATCTCATCAAGAAGATGACCACTTCATTGATTTAATCCACTT
CTCTGTATCTCATCAAGAAGACGGA
Found at i:18857 original size:123 final size:122
Alignment explanation
Indices: 18548--18886 Score: 423
Period size: 123 Copynumber: 2.7 Consensus size: 122
18538 CAAGAAGACG
* *
18548 AATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGA-CTCACTTCC
1 AATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATT-ATTTGATCT-ACTTCT
** * * *
18612 TTGTATCTCATCAAGAAGACGGGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTCATTT
64 TTGTATCTCATCAAGAAGA--TAGATTTGGAGTTTCACTCACATTGAACTTTGCTTCATTT
* * * * *
18673 AA-TTGGTCCACTTCTTTGTATCTCATC-AGAAAGATGATCACTTTATTGATTTAATCCACTTCT
1 AATTTGGTTCACTTCTCTGTATCTCATCAAG-AAGATGATCGCTTTATT-ATTTGATCTACTTCT
* * * *
18736 TTGTATCTCATTAGGAAGATAGATTTGGAGTTTCACTCGCATTGAACTTTGTTTCATTT
64 TTGTATCTCATCAAGAAGATAGATTTGGAGTTTCACTCACATTGAACTTTGCTTCATTT
* * *
18795 AATTTGGTTTACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTATTTTGATCTACTTCTC
1 AATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTA-TTTGATCTACTTCTT
18860 TGTATCTCATCAAGAAGATAGATTTGG
65 TGTATCTCATCAAGAAGATAGATTTGG
18887 TCCACTTCTC
Statistics
Matches: 183, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
122 36 0.20
123 76 0.42
124 68 0.37
125 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (122 bp):
AATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTATTTGATCTACTTCTTT
GTATCTCATCAAGAAGATAGATTTGGAGTTTCACTCACATTGAACTTTGCTTCATTT
Found at i:18859 original size:332 final size:332
Alignment explanation
Indices: 18472--19078 Score: 927
Period size: 332 Copynumber: 1.8 Consensus size: 332
18462 TTCATTAGTC
* *
18472 TACTTCTTTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATTTCA
1 TACTTCTCTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATCTCA
*
18537 TCAAGAAGACGA-ATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTT
66 TCAAGAAGA-GAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTT
* * * * * *
18601 GACTCACTTC-CTTGTATCTCATCAAGAAGACGGGGGTTTGAAGTTTCACTCACATTGAGCTTTG
130 GACCCACTTCTC-AGTATCTCATCAAGAAGACGGGAGTTTAAAGTTTCACTCAAATTGAGCTTCG
*
18665 CTTCATTTAATTGGTCCACTTCTTTGTATCTCATCAGAAAGATGAT-CACTTTATTGATTTAATC
194 CTTCATTTAATTGGTCCACTTCTTTGTATCTCATCAGAAAGATG-TCCACTTCATTGATTTAATC
*
18729 CACTTCTTTGTATCTCATTAGGAAGATAGATTTGGAGTTTCACTCGCATTGAACTTTGTTTCATT
258 CACTTCTCTGTATCTCATTAGGAAGATAGATTTGGAGTTTCACTCGCATTGAACTTTGTTTCATT
18794 TAATTTGGTT
323 TAATTTGGTT
* *
18804 TACTTCTCTGTATCTCATCAAGAAGATGA-TCGCTTCATT-ATTTTGATCTACTTCTCTGTATCT
1 TACTTCTCTGTATCTCATCAAGAAGACGACT-GCTTCATTGATTTT-ATCCACTTCTCTGTATCT
* *
18867 CATCAAGAAGATAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTT
64 CATCAAGAAGAGAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTT
* * *
18932 TGACCCACTTCTCAGTATCTCATCAGGAAGATGGGAGTTTAAAGTTTCACTTAAATTGAGCTTCG
129 TGACCCACTTCTCAGTATCTCATCAAGAAGACGGGAGTTTAAAGTTTCACTCAAATTGAGCTTCG
* * * * *
18997 CTTCATTTATTTGGTCTACTTCTTTGTATCTTATCAGGAAGATGTCCGCTTCATTGATTTAATCC
194 CTTCATTTAATTGGTCCACTTCTTTGTATCTCATCAGAAAGATGTCCACTTCATTGATTTAATCC
19062 ACTTCTCTGTATCTCAT
259 ACTTCTCTGTATCTCAT
19079 CAAGAAGACG
Statistics
Matches: 247, Mismatches: 23, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
331 8 0.03
332 238 0.96
333 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (332 bp):
TACTTCTCTGTATCTCATCAAGAAGACGACTGCTTCATTGATTTTATCCACTTCTCTGTATCTCA
TCAAGAAGAGAGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTG
ACCCACTTCTCAGTATCTCATCAAGAAGACGGGAGTTTAAAGTTTCACTCAAATTGAGCTTCGCT
TCATTTAATTGGTCCACTTCTTTGTATCTCATCAGAAAGATGTCCACTTCATTGATTTAATCCAC
TTCTCTGTATCTCATTAGGAAGATAGATTTGGAGTTTCACTCGCATTGAACTTTGTTTCATTTAA
TTTGGTT
Found at i:18942 original size:85 final size:85
Alignment explanation
Indices: 18796--18963 Score: 246
Period size: 85 Copynumber: 2.0 Consensus size: 85
18786 GTTTCATTTA
** * * * *
18796 ATTTGGTTTACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTATTTTGATCTACTTCTCT
1 ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTACTTTGACCCACTTCTCA
18861 GTATCTCATCAAGAAGATAG
66 GTATCTCATCAAGAAGATAG
* * *
18881 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCA
1 ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTACTTTGACCCACTTCTCA
*
18946 GTATCTCATCAGGAAGAT
66 GTATCTCATCAAGAAGAT
18964 GGGAGTTTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (85 bp):
ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTACTTTGACCCACTTCTCA
GTATCTCATCAAGAAGATAG
Found at i:19066 original size:48 final size:48
Alignment explanation
Indices: 18995--19086 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
18985 AATTGAGCTT
* ** * * * *
18995 CGCTTCATTTATTTGGTCTACTTCTTTGTATCTTATCAGGAAGATGTC
1 CGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGATGTC
19043 CGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGA
1 CGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGA
19087 CGGATTTGGT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (48 bp):
CGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGATGTC
Found at i:19095 original size:209 final size:209
Alignment explanation
Indices: 18675--19507 Score: 1093
Period size: 209 Copynumber: 4.0 Consensus size: 209
18665 CTTCATTTAA
* * * * * * * *
18675 TTGGTCCACTTCTTTGTATCTCATCAGAAAGATGATCACTTTATTGATTTAATCCACTTCTTTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* * * ** * * *
18740 ATCTCATTAGGAAGAT-AGA-TTTGGAGTTTCACTCGCATTGAACTTTGTTTCATTTAATTTGGT
66 ATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCA-TTGATTTGGT
* * * * * *
18803 TTACTTCTCTGTATCTCATCAAGAAGATGATCGCTTCATTATTTTGATCTACTTCTCTGTATCTC
130 CTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTACTTTAATCCACTTCTCTGTATCTC
*
18868 ATCAAGAAGATAGAT
195 ATCAAGAAGATGGAT
* * *
18883 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCAGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* * * *
18948 ATCTCATCAGGAAGATGGGAGTTTAAAGTTTCACTTAAATTGAGCTTCGCTTCATTTATTTGGTC
66 ATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTGGTC
* * *
19013 TACTTCTTTGTATCTTATCAGGAAGATGTCCGCTTCATTGA-TTTAATCCACTTCTCTGTATCTC
131 TACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATT-ACTTTAATCCACTTCTCTGTATCTC
*
19077 ATCAAGAAGACGGAT
195 ATCAAGAAGATGGAT
* * *
19092 TTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* * *
19157 ATCTCATCAGGAAGATGGGAGTTTGAAGTTTCTCTCAAATTGAGTTTTGTTTCATTGATTTGGTC
66 ATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTGGTC
*
19222 TACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGA-TTTAATCCACTTCT-TAGTATCT
131 TACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATT-ACTTTAATCCACTTCTCT-GTATCT
* * * *
19285 CATTAGGAAGGTGAAT
194 CATCAAGAAGATGGAT
* *
19301 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACTCACTTCTCTGT
1 TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
* *
19366 ATTTCATCAGGAAGATTGGG-GTTTGAAGTTTCACTCAAATTGAGTTTTGCTTCATTGATTTGGT
66 ATCTCATCAGGAAGA-TGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTGGT
* * * * *
19430 CTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTCCGTATCTC
130 CTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTACTTTAATCCACTTCTCTGTATCTC
19495 ATCAAGAAGATGG
195 ATCAAGAAGATGG
19508 GAGTTTAAAG
Statistics
Matches: 551, Mismatches: 67, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
208 74 0.13
209 447 0.81
210 30 0.05
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (209 bp):
TTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCTGT
ATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTGGTC
TACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTACTTTAATCCACTTCTCTGTATCTCA
TCAAGAAGATGGAT
Found at i:19119 original size:85 final size:85
Alignment explanation
Indices: 19005--19171 Score: 235
Period size: 85 Copynumber: 2.0 Consensus size: 85
18995 CGCTTCATTT
* * * * * *
19005 ATTTGGTCTACTTCTTTGTATCTTATCAGGAAGATGTCCGCTTCATTGATTTAATCCACTTCTCT
1 ATTTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCGCTTCATTGATTGAACCCACTTCTCT
19070 GTATCTCATCAAGAAGACGG
66 GTATCTCATCAAGAAGACGG
* * * *
19090 ATTTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTCT
1 ATTTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCGCTTCATTGATTGAACCCACTTCTCT
*
19155 GTATCTCATCAGGAAGA
66 GTATCTCATCAAGAAGA
19172 TGGGAGTTTG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCGCTTCATTGATTGAACCCACTTCTCT
GTATCTCATCAAGAAGACGG
Found at i:19263 original size:48 final size:48
Alignment explanation
Indices: 19207--19381 Score: 142
Period size: 48 Copynumber: 3.9 Consensus size: 48
19197 TGAGTTTTGT
*
19207 TTCATTGATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGC
1 TTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGC
** * *
19255 TTCATTGATTTAATCCACTTCT-TAGTATCTCATTAGG-A-A-G---G-
1 TTCATTGATTTGGTCTACTTCTCT-GTATCTCATCAGGAAGATGACCGC
* *
19296 -TGA---ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTC
1 TTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGC
* * * *
19340 TTTATTGCTTT-GACTCACTTCTCTGTATTTCATCAGGAAGAT
1 TTCATTGATTTGGTCT-ACTTCTCTGTATCTCATCAGGAAGAT
19382 TGGGGTTTGA
Statistics
Matches: 100, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
37 24 0.24
38 2 0.02
39 1 0.01
40 3 0.03
42 1 0.01
45 3 0.03
46 1 0.01
47 5 0.05
48 60 0.60
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (48 bp):
TTCATTGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGC
Found at i:19359 original size:85 final size:85
Alignment explanation
Indices: 19214--19379 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
19204 TGTTTCATTG
*
19214 ATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCT-T
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCT
*
19278 AGTATCTCATTAGGAAGGTGA
66 -GTATCTCATCAGGAAGGTGA
* * * *
19299 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGA-CTCACTTCTC
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATC-CACTTCTC
*
19363 TGTATTTCATCAGGAAG
65 TGTATCTCATCAGGAAG
19380 ATTGGGGTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
84 1 0.01
85 70 0.97
86 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCT
GTATCTCATCAGGAAGGTGA
Found at i:19439 original size:333 final size:333
Alignment explanation
Indices: 19089--19803 Score: 1214
Period size: 333 Copynumber: 2.1 Consensus size: 333
19079 CAAGAAGACG
*
19089 GATTTGGTCTACTTCTCTGTACCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTC
* * * * * *
19154 TGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCTCTCAAATTGAGTTTTGTTTCATTGATTTG
66 CGTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
*
19219 GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTTAGTATC
131 GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCAGTATC
* * *
19284 TCATTAGGAAGGTGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCT
196 TCATCAGGAAGATGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCT
* * *
19349 TTGACTCACTTCTCTGTATTTCATCAGGAAGATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTT
261 TTAACCCACTTCTCTGTATCTCATCAGGAAGATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTT
19414 GCTTCATT
326 GCTTCATT
* *
19422 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTC
19487 CGTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
66 CGTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
19552 GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCAGTATC
131 GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCAGTATC
* *
19617 TCATCAGTAAGATGGATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCT
196 TCATCAGGAAGATGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCT
* *
19682 TTAACCCACTTCTTTGTATCTCATCAGGAATATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTT
261 TTAACCCACTTCTCTGTATCTCATCAGGAAGATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTT
*
19747 GCTTTATT
326 GCTTCATT
* * *
19755 GATTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTG
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTG
19804 ATTTAATCCA
Statistics
Matches: 357, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
333 357 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (333 bp):
GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTGGACCCACTTCTC
CGTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCAGTATC
TCATCAGGAAGATGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCT
TTAACCCACTTCTCTGTATCTCATCAGGAAGATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTT
GCTTCATT
Found at i:19519 original size:124 final size:123
Alignment explanation
Indices: 19299--19631 Score: 499
Period size: 124 Copynumber: 2.7 Consensus size: 123
19289 AGGAAGGTGA
* * *
19299 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTGACTCACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTCA
* * * *
19364 GTATTTCATCAGGAAGATTGGGGTTTGAAGTTTCACTCAAATTGAGTTTTGCTTCATTG
66 GTATCTCATCAAGAAGA-TGGGGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTG
*
19423 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTCC
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTCA
19488 GTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTG
66 GTATCTCATCAAGAAGATGGG-GTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTG
* * * * *
19547 ATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGA-TTTAATCCACTTCTC
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATT-ACTTTGACCCACTTCTC
19611 AGTATCTCATC-AGTAAGATGG
65 AGTATCTCATCAAG-AAGATGG
19632 ATTTGGTCTA
Statistics
Matches: 193, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
123 6 0.03
124 186 0.96
125 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (123 bp):
ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTCA
GTATCTCATCAAGAAGATGGGGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTG
Found at i:19609 original size:48 final size:48
Alignment explanation
Indices: 19538--19630 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
19528 ATTGAGCTTT
** * * *
19538 GCTTCATTGATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACC
1 GCTTCATTGATTTAATCCACTTCTCAGTATCTCATCAGGAAGATGACC
*
19586 GCTTCATTGATTTAATCCACTTCTCAGTATCTCATCAGTAAGATG
1 GCTTCATTGATTTAATCCACTTCTCAGTATCTCATCAGGAAGATG
19631 GATTTGGTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (48 bp):
GCTTCATTGATTTAATCCACTTCTCAGTATCTCATCAGGAAGATGACC
Found at i:19637 original size:209 final size:209
Alignment explanation
Indices: 19422--20011 Score: 871
Period size: 209 Copynumber: 2.8 Consensus size: 209
19412 TTGCTTCATT
* *
19422 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTACTTTGACCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTC
* * *
19487 CGTATCTCATCAAGAAGATGGGAGTTTAAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
66 TGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
*
19552 GTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCAC-TTCTCAGTAT
131 GTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTTCTCA-TAT
* **
19616 CTCATCAGTAAGATG
195 CTCATCAGGAAGACA
* *
19631 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTAACCCACTTCTT
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTC
* * *
19696 TGTATCTCATCAGGAATATTGGG-GTTTGAAGTTTCACTCAAATTGAGTTTTGCTTTATTGATTT
66 TGTATCTCATCAGGAAGA-TGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTT
* * *
19760 GGTTTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTTTTTATAT
130 GGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTTCTCATAT
*
19825 CTCATTAGGAAGACA
195 CTCATCAGGAAGACA
* *
19840 GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTCACCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTC
* * *
19905 TGTATCTCATCAGGAAGAT-GGAGGTTTTGAAGTTTCACTCACATTGAGCTTCGTTTCATTGATT
66 TGTATCTCATCAGGAAGATGGGA-G-TTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATT
* ** * *
19969 TGGTCTACTTTTCCATATCTTATCAAGAAGATGACCGCTTCAT
129 TGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCAT
20012 CATTTTAATG
Statistics
Matches: 342, Mismatches: 34, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
207 2 0.01
208 1 0.00
209 260 0.76
210 79 0.23
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (209 bp):
GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTAACCCACTTCTC
TGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCAAATTGAGCTTTGCTTCATTGATTTG
GTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTTCTCATATC
TCATCAGGAAGACA
Found at i:19656 original size:85 final size:85
Alignment explanation
Indices: 19546--19708 Score: 254
Period size: 85 Copynumber: 1.9 Consensus size: 85
19536 TTGCTTCATT
* * *
19546 GATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCGCTTCATTGATTTAACCCACTTCTC
19611 AGTATCTCATCAGTAAGATG
66 AGTATCTCATCAGTAAGATG
* * * *
19631 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTAACCCACTTCTT
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCGCTTCATTGATTTAACCCACTTCTC
*
19696 TGTATCTCATCAG
66 AGTATCTCATCAG
19709 GAATATTGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCTGTATCTCATCAGGAAAATGACCGCTTCATTGATTTAACCCACTTCTC
AGTATCTCATCAGTAAGATG
Found at i:19900 original size:85 final size:85
Alignment explanation
Indices: 19755--19922 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
19745 TTGCTTTATT
* * * *
19755 GATTTGGTTTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTTTT
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
*
19820 TATATCTCATTAGGAAGACA
66 TATATCTCATCAGGAAGACA
* * * * *
19840 GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCTCTTTATTGCTTTCACCCACTTCTC
1 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
*
19905 TGTATCTCATCAGGAAGA
66 TATATCTCATCAGGAAGA
19923 TGGAGGTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAACCCACTTCTC
TATATCTCATCAGGAAGACA
Found at i:21097 original size:42 final size:43
Alignment explanation
Indices: 20967--21131 Score: 172
Period size: 42 Copynumber: 3.8 Consensus size: 43
20957 TTTAAATCGT
* * **
20967 CCTTTGCAGGTTTTCATCTCAACATCCCTTTTTATTTCAAGATGC
1 CCTTTGCAGGTTTTCATCTTAA-AT-CCTTTTTTTTTCAAGACAC
* * **
21012 CCTTTGCGGGTTTTCATCTTGAAATCCCTTTGGTTTCAAGACAC
1 CCTTTGCAGGTTTTCATCTT-AAATCCTTTTTTTTTCAAGACAC
* *
21056 CCTTTGCAGATTTTCATCTT-AATCCTTTTTTTTTCGAGACAC
1 CCTTTGCAGGTTTTCATCTTAAATCCTTTTTTTTTCAAGACAC
* *
21098 CCTTTACAGGTTTTCAT-TTCAATCTCTTTTTTTT
1 CCTTTGCAGGTTTTCATCTTAAATC-CTTTTTTTT
21132 AGGCAAAATA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 37 0.36
43 9 0.09
44 32 0.31
45 20 0.20
46 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.46
Consensus pattern (43 bp):
CCTTTGCAGGTTTTCATCTTAAATCCTTTTTTTTTCAAGACAC
Found at i:23598 original size:40 final size:40
Alignment explanation
Indices: 23549--23628 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
23539 GGTGGTGGTA
23549 ACTCATGTATGGCTTTGACTTTATCTGGATCAATTTCAAT
1 ACTCATGTATGGCTTTGACTTTATCTGGATCAATTTCAAT
* *
23589 ACTCCTGTATGGCTTTGACTTTATTTGGATCAATTTCAAT
1 ACTCATGTATGGCTTTGACTTTATCTGGATCAATTTCAAT
23629 CCCCTTTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (40 bp):
ACTCATGTATGGCTTTGACTTTATCTGGATCAATTTCAAT
Found at i:34173 original size:18 final size:18
Alignment explanation
Indices: 34150--34186 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
34140 TTTGTGATCA
34150 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
34168 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
34186 A
1 A
34187 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:36353 original size:82 final size:82
Alignment explanation
Indices: 36244--36438 Score: 300
Period size: 82 Copynumber: 2.4 Consensus size: 82
36234 CTGTATTTAT
* * *
36244 AGTGAGCCCAACTCTAGTTGGATTAACCAACAATAATTCCGTTAATTCCTAGCACCCAGTACCTA
1 AGTGAGCCCAGCTCTAGTTGGATTAACCAACAATAATTCCGTGAATTCCTAGCACCCAATACCTA
*
36309 GCGGATAAACCGCAATA
66 GCGGATAAACCACAATA
* *
36326 AGTGAGCCCAGCTCTAGTTGGATTAACCAACAATAATTCCGTGAATTCCTGGCACCCAATGCCTA
1 AGTGAGCCCAGCTCTAGTTGGATTAACCAACAATAATTCCGTGAATTCCTAGCACCCAATACCTA
* *
36391 GCGGATAAATCATAATA
66 GCGGATAAACCACAATA
* *
36408 AGTGAGCTCAGCTCTAGTTGGGTTAACCAAC
1 AGTGAGCCCAGCTCTAGTTGGATTAACCAAC
36439 GGATTTGCAC
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 103 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (82 bp):
AGTGAGCCCAGCTCTAGTTGGATTAACCAACAATAATTCCGTGAATTCCTAGCACCCAATACCTA
GCGGATAAACCACAATA
Found at i:41463 original size:23 final size:21
Alignment explanation
Indices: 41407--41463 Score: 51
Period size: 23 Copynumber: 2.4 Consensus size: 21
41397 TTCCTACTTA
41407 GTTATTTTCTAGTTGTAATTTAG
1 GTTA-TTT-TAGTTGTAATTTAG
*
41430 GTCTATATTTAGTTGTATTTCTAG
1 GT-TAT-TTTAGTTGTAATT-TAG
41454 GTTAGTTTTA
1 GTTA-TTTTA
41464 TTTTCTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.21, C:0.05, G:0.18, T:0.56
Consensus pattern (21 bp):
GTTATTTTAGTTGTAATTTAG
Found at i:45103 original size:57 final size:57
Alignment explanation
Indices: 45040--45150 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 57
45030 TAGAGTTACC
*
45040 AGGATAAGACAAACAGATAAGAGCAAAAGTATAAACAAATAGAGTTACCATATAATA
1 AGGATAAGACAAACAGATAAGAGCAAAAGTAAAAACAAATAGAGTTACCATATAATA
* *
45097 AGGATAAGAGAAACAGATAAGAGCAAAAGTAAAAACAGATAGAGTTACCATATA
1 AGGATAAGACAAACAGATAAGAGCAAAAGTAAAAACAAATAGAGTTACCATATA
45151 TAACTTTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.56, C:0.10, G:0.18, T:0.16
Consensus pattern (57 bp):
AGGATAAGACAAACAGATAAGAGCAAAAGTAAAAACAAATAGAGTTACCATATAATA
Found at i:45802 original size:17 final size:18
Alignment explanation
Indices: 45769--45841 Score: 50
Period size: 17 Copynumber: 4.2 Consensus size: 18
45759 TAGTAATGAT
*
45769 TTTAT-TTATATATATTA
1 TTTATATTATATAAATTA
45786 TTTATATTAT-TAAATTAAA
1 TTTATATTATATAAATT--A
* *
45805 TTTCATATTATGT---CTA
1 TTT-ATATTATATAAATTA
45821 TTTATATTAT-TAAATTA
1 TTTATATTATATAAATTA
45838 TTTA
1 TTTA
45842 ATCATATTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
14 1 0.02
15 7 0.16
16 4 0.09
17 16 0.36
18 5 0.11
19 4 0.09
20 7 0.16
21 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (18 bp):
TTTATATTATATAAATTA
Found at i:46130 original size:19 final size:19
Alignment explanation
Indices: 46106--46143 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
46096 AAAGTTAATA
* *
46106 ACAAATTTGCTTACTGTGG
1 ACAAATTTGATTAATGTGG
46125 ACAAATTTGATTAATGTGG
1 ACAAATTTGATTAATGTGG
46144 GTGATAGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
ACAAATTTGATTAATGTGG
Found at i:47371 original size:28 final size:28
Alignment explanation
Indices: 47340--47417 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
47330 ATAAATATCA
* * *
47340 AATTTATATATGAACTTTAGTTTTATGC
1 AATTTATATATGAACTTTAATTTAATAC
* * *
47368 AATTGATACATAAACTTTAATTTAATAC
1 AATTTATATATGAACTTTAATTTAATAC
*
47396 AA-TTATATATGAAACTTGAATT
1 AATTTATATATG-AACTTTAATT
47418 GTGACCCATA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 6 0.15
28 33 0.85
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (28 bp):
AATTTATATATGAACTTTAATTTAATAC
Found at i:67863 original size:16 final size:15
Alignment explanation
Indices: 67813--67864 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
67803 GTTCTAACAA
*
67813 TTTTTTTATTCT-CT
1 TTTTTTTATTTTCCT
* *
67827 TTATTTTATTTTCTT
1 TTTTTTTATTTTCCT
67842 TCTTTTTTATTTGTCCT
1 T-TTTTTTATTT-TCCT
67859 TTTTTT
1 TTTTTT
67865 CCCTCTCTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 10 0.33
15 2 0.07
16 14 0.47
17 4 0.13
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTTTTTATTTTCCT
Found at i:72778 original size:24 final size:24
Alignment explanation
Indices: 72739--72801 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
72729 TAGACTAATA
* * *
72739 AGAGTTTGACTCAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
* * *
72763 ATAGTTTAATTGAAACAATTAAAC
1 AGAGTTTAACTGAAACAAATAAAC
72787 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
72802 GATTATTTCT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:75864 original size:20 final size:21
Alignment explanation
Indices: 75834--75877 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
75824 TGCGAATTAA
* *
75834 AAACAAAAATTAAATTAAATT
1 AAACAAAAATTAAAATAAAAT
75855 AAAC-AAAATTAAAATAAAAT
1 AAACAAAAATTAAAATAAAAT
75875 AAA
1 AAA
75878 AATTGAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACAAAAATTAAAATAAAAT
Found at i:79268 original size:18 final size:18
Alignment explanation
Indices: 79245--79279 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79235 TAGAAAGTGA
79245 AAAAATAATAAAAATTAT
1 AAAAATAATAAAAATTAT
* *
79263 AAAAATATTACAAATTA
1 AAAAATAATAAAAATTA
79280 CTCAATTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATAATAAAAATTAT
Found at i:83802 original size:30 final size:30
Alignment explanation
Indices: 83764--84061 Score: 277
Period size: 30 Copynumber: 10.0 Consensus size: 30
83754 TTAAAATCGA
83764 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
* *
83794 GCCAAATTTGAATTTTTAGAAAGTTTAGGG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
* * * * *
83824 GTCAAATTGGAAGTTTTGAAAAG-TTCGAAG
1 GTCAAATTTGAATTTTTGGAAAGTTTAG-GG
83854 GTCAAATTCT--ATTTTTGGAAAGTTTTA-GG
1 GTCAAATT-TGAATTTTTGGAAAG-TTTAGGG
*
83883 GTCAAATTTGAA-TTTTGGAAAATTTAGGG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
* *
83912 GT-AAATTTTGGATTTTTTAGAAAGTTTAGGG
1 GTCAAA-TTT-GAATTTTTGGAAAGTTTAGGG
* * ** *
83943 GTAAAATTAGAATTTTTAAAAAGTTTAGAG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
*
83973 GTCAAATTTGAATTTTTGGAAAATTTAGGG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGGG
* ** *
84003 GT-AATTTTTTTATTTTTGGAAAGTTTATGG
1 GTCAA-ATTTGAATTTTTGGAAAGTTTAGGG
* * **
84033 GTAAAATTAGAATTTTTAAAAAGTTTAGG
1 GTCAAATTTGAATTTTTGGAAAGTTTAGG
84062 AGTCTATATA
Statistics
Matches: 215, Mismatches: 40, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
28 8 0.04
29 40 0.19
30 141 0.66
31 23 0.11
32 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (30 bp):
GTCAAATTTGAATTTTTGGAAAGTTTAGGG
Found at i:83931 original size:119 final size:118
Alignment explanation
Indices: 83764--84061 Score: 327
Period size: 119 Copynumber: 2.5 Consensus size: 118
83754 TTAAAATCGA
* *
83764 GTCAAATTTGAATTTTTGGAAAGTTTAGGGGCCAAATTTGAATTTTTAGAAAGTTTAGGGGTCAA
1 GTCAAATTTGAATTTTTGGAAAATTTAGGGGCCAAATTTGAATTTTTAGAAAGTTTAGGGGTAAA
* * *
83829 ATTGGAAGTTTTGAAAAGTTCGA-AGGTCAAATTCT-ATTTTTGGAAAGTTTTAGG
66 ATTAGAAGTTTTAAAAAGTT-GAGAGGTCAAATT-TAATTTTTGGAAA-ATTTAGG
* *
83883 GTCAAATTTGAA-TTTTGGAAAATTTAGGGG-TAAATTTTGGATTTTTTAGAAAGTTTAGGGGTA
1 GTCAAATTTGAATTTTTGGAAAATTTAGGGGCCAAA-TTT-GAATTTTTAGAAAGTTTAGGGGTA
* *
83946 AAATTAGAATTTTTAAAAAGTTTAGAGGTCAAATTTGAATTTTTGGAAAATTTAGGG
64 AAATTAGAAGTTTTAAAAAGTTGAGAGGTCAAATTT-AATTTTTGGAAAATTTA-GG
* ** * * ** * *
84003 GT-AATTTTTTTATTTTTGGAAAGTTTATGGGTAAAATTAGAATTTTTAAAAAGTTTAGG
1 GTCAA-ATTTGAATTTTTGGAAAATTTAGGGGCCAAATTTGAATTTTTAGAAAGTTTAGG
84062 AGTCTATATA
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
117 3 0.02
118 22 0.14
119 69 0.45
120 37 0.24
121 18 0.12
122 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (118 bp):
GTCAAATTTGAATTTTTGGAAAATTTAGGGGCCAAATTTGAATTTTTAGAAAGTTTAGGGGTAAA
ATTAGAAGTTTTAAAAAGTTGAGAGGTCAAATTTAATTTTTGGAAAATTTAGG
Found at i:83987 original size:90 final size:89
Alignment explanation
Indices: 83767--84061 Score: 305
Period size: 90 Copynumber: 3.3 Consensus size: 89
83757 AAATCGAGTC
* ** * * *
83767 AAATTTGAATTTTTGGAAAGTTTAGGGGCCAAATTTGAATTTTTAGAAAGTTTAGGGGTCAAA--
1 AAATTAGAATTTTTAAAAAGTTTA-GGGTCAAATTTGAATTTTTGGAAAATTTAGGGGT-AAATT
* * * *
83830 TTGGAAGTTTT-GAAAAG-TTCGAAGGTC
64 TTGG-ATTTTTAG-AAAGTTTAG-GGGTA
** **
83857 AAATT-CTATTTTTGGAAAGTTTTAGGGTCAAATTTGAA-TTTTGGAAAATTTAGGGGTAAATTT
1 AAATTAGAATTTTTAAAAAG-TTTAGGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTAAATTT
83920 TGGATTTTTTAGAAAGTTTAGGGGTA
65 TGGA-TTTTTAGAAAGTTTAGGGGTA
*
83946 AAATTAGAATTTTTAAAAAGTTTAGAGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTAATTTT
1 AAATTAGAATTTTTAAAAAGTTTAG-GGTCAAATTTGAATTTTTGGAAAATTTAGGGGTAAATTT
** * *
84011 TTTATTTTTGGAAAGTTTATGGGTA
65 TGGATTTTTAGAAAGTTTAGGGGTA
84036 AAATTAGAATTTTTAAAAAGTTTAGG
1 AAATTAGAATTTTTAAAAAGTTTAGG
84062 AGTCTATATA
Statistics
Matches: 178, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
87 3 0.02
88 18 0.10
89 51 0.29
90 80 0.45
91 26 0.15
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (89 bp):
AAATTAGAATTTTTAAAAAGTTTAGGGTCAAATTTGAATTTTTGGAAAATTTAGGGGTAAATTTT
GGATTTTTAGAAAGTTTAGGGGTA
Found at i:85116 original size:56 final size:56
Alignment explanation
Indices: 85051--85157 Score: 171
Period size: 56 Copynumber: 1.9 Consensus size: 56
85041 TATTATTTAT
85051 TTATTTATTTATCTATATTCATAAAATAATAAATAAAT-AATAAAATAAAATTAATA
1 TTATTTATTTATCTATATTCATAAAATAATAAATAAATAAAT-AAATAAAATTAATA
* * *
85107 TTATTTATTTATTTATATTCATAAAATGATAAATAAGTAAATAAATAAAAT
1 TTATTTATTTATCTATATTCATAAAATAATAAATAAATAAATAAATAAAAT
85158 AAGAAAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
56 44 0.94
57 3 0.06
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (56 bp):
TTATTTATTTATCTATATTCATAAAATAATAAATAAATAAATAAATAAAATTAATA
Found at i:88996 original size:16 final size:17
Alignment explanation
Indices: 88975--89012 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
88965 TTTAAGAAAA
88975 TAAAAA-TAAAA-ATTT
1 TAAAAATTAAAAGATTT
88990 CTAAAAATTAAAAGATTT
1 -TAAAAATTAAAAGATTT
89008 TAAAA
1 TAAAA
89013 TGTTTTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 10 0.50
18 4 0.20
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAAATTAAAAGATTT
Found at i:90322 original size:76 final size:77
Alignment explanation
Indices: 90207--90365 Score: 293
Period size: 76 Copynumber: 2.1 Consensus size: 77
90197 AATTATAACA
90207 CATGTCATATCATAAATTTTTTTTGGGGCATTACACAATTGCCATGTGTAGATCTTTAGTTCTAC
1 CATGTCATATCATAAATTTTTTTTGGGGCATTACACAATTGCCATGTGTAGATCTTTAGTTCTAC
*
90272 TAAACACTGTTG
66 TAAACACGGTTG
90284 CATGTCATATCATAAA-TTTTTTTGGGGCATTACACAATTGCCATGTGTAGATCTTTAGTTCTAC
1 CATGTCATATCATAAATTTTTTTTGGGGCATTACACAATTGCCATGTGTAGATCTTTAGTTCTAC
90348 TAAACACGGTTG
66 TAAACACGGTTG
90360 CGATGT
1 C-ATGT
90366 GTGGGTTTTG
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
76 60 0.75
77 20 0.25
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (77 bp):
CATGTCATATCATAAATTTTTTTTGGGGCATTACACAATTGCCATGTGTAGATCTTTAGTTCTAC
TAAACACGGTTG
Found at i:90434 original size:82 final size:83
Alignment explanation
Indices: 90322--90508 Score: 270
Period size: 82 Copynumber: 2.2 Consensus size: 83
90312 ATTACACAAT
* **
90322 TGCCATGTGTAGATCTTTAGTTCTACTAAACACGGTTG-CGATGTGTGGGTTTTGTCCAAATTAT
1 TGCCATGTG-AGATCTTTAGTTCCACTAAACACAATTGTC-ATGTGTGGGTTTTGTCCAAATTAT
*
90386 TCTTGTTTTTCATCTTTCTA
64 TCTTGTTTTTCACCTTTCTA
90406 TGCCATGTG-GATCTTTAGTTCCACTAAACACAATTGTCATGTGTGGGTTTTGTCCAAATTATTC
1 TGCCATGTGAGATCTTTAGTTCCACTAAACACAATTGTCATGTGTGGGTTTTGTCCAAATTATTC
*
90470 TTGTTTTTCGCCTTTCTA
66 TTGTTTTTCACCTTTCTA
* *
90488 TGTCATGTGTAGGTCTTTAGT
1 TGCCATGTG-AGATCTTTAGT
90509 CCCAGCCAAC
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
82 74 0.80
83 1 0.01
84 18 0.19
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (83 bp):
TGCCATGTGAGATCTTTAGTTCCACTAAACACAATTGTCATGTGTGGGTTTTGTCCAAATTATTC
TTGTTTTTCACCTTTCTA
Found at i:92232 original size:14 final size:16
Alignment explanation
Indices: 92181--92232 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 16
92171 TATCCAAAAA
* *
92181 ATAAATTT-AGAAATA
1 ATAAATTTCATAAATT
92196 ATAAA-TTCATAAATT
1 ATAAATTTCATAAATT
92211 ATAAATTTCA-AAATT
1 ATAAATTTCATAAATT
92226 A-AAATTT
1 ATAAATTT
92233 TGAAATCTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 8 0.24
15 21 0.64
16 4 0.12
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (16 bp):
ATAAATTTCATAAATT
Found at i:101998 original size:24 final size:24
Alignment explanation
Indices: 101941--102115 Score: 255
Period size: 24 Copynumber: 7.3 Consensus size: 24
101931 TTAAACTCTG
101941 TCTGGGCTCGTAAGAGCTAACCA-
1 TCTGGGCTCGTAAGAGCTAACCAT
*
101964 TCTGAGG-TCGTAAGAGCTAATCAT
1 TCTG-GGCTCGTAAGAGCTAACCAT
*
101988 TCTGGGCTCGTAAGGGCTAACCAT
1 TCTGGGCTCGTAAGAGCTAACCAT
*
102012 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAACCAT
*
102036 TCTGGGCTCGTAAGAACTAACCAT
1 TCTGGGCTCGTAAGAGCTAACCAT
* *
102060 TCTAGGCTAGTAAGAGCTAACCAT
1 TCTGGGCTCGTAAGAGCTAACCAT
*
102084 TTTGGGCTCGTAAGAGCTAACCAT
1 TCTGGGCTCGTAAGAGCTAACCAT
*
102108 TTTGGGCT
1 TCTGGGCT
102116 TGTGTGGGCT
Statistics
Matches: 136, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
23 21 0.15
24 115 0.85
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (24 bp):
TCTGGGCTCGTAAGAGCTAACCAT
Found at i:104545 original size:59 final size:59
Alignment explanation
Indices: 104482--104624 Score: 148
Period size: 59 Copynumber: 2.4 Consensus size: 59
104472 GTCTTCGGAC
** * *
104482 GTTCG-GGAGTAAAATAATAA-TTTTATGGTGTTTCGGGGTCGAAAA-GGGGATTTTTGGGA
1 GTTCGAGG-GTAAAATAATAATTTTTA-GAAGGTTCGGGGTC-AAAATGGGGATTTTTGGAA
** *
104541 GTTCGAGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAATTGGGATTTTTGGAA
1 GTTCGAGGGTAAAATAATAATTTTTAGAAGGTTCGGGGTCAAAATGGGGATTTTTGGAA
* **
104600 GTTCGAGGCTAAAATGGTAATTTTT
1 GTTCGAGGGTAAAATAATAATTTTT
104625 GGACAGTCTG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
58 4 0.05
59 62 0.85
60 7 0.10
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.35
Consensus pattern (59 bp):
GTTCGAGGGTAAAATAATAATTTTTAGAAGGTTCGGGGTCAAAATGGGGATTTTTGGAA
Found at i:104563 original size:29 final size:29
Alignment explanation
Indices: 104531--104627 Score: 117
Period size: 29 Copynumber: 3.3 Consensus size: 29
104521 CGAAAAGGGG
*
104531 ATTTTTGGGAGTTCGAGGGTAAAATGGTA
1 ATTTTTGGAAGTTCGAGGGTAAAATGGTA
* *
104560 ATTTTTAGAAGGTTCG-GGGTCAAAATTGG-G
1 ATTTTTGGAA-GTTCGAGGGT-AAAA-TGGTA
*
104590 ATTTTTGGAAGTTCGAGGCTAAAATGGTA
1 ATTTTTGGAAGTTCGAGGGTAAAATGGTA
104619 ATTTTTGGA
1 ATTTTTGGA
104628 CAGTCTGGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
28 3 0.05
29 30 0.53
30 21 0.37
31 3 0.05
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.36
Consensus pattern (29 bp):
ATTTTTGGAAGTTCGAGGGTAAAATGGTA
Found at i:104585 original size:30 final size:29
Alignment explanation
Indices: 104513--104624 Score: 88
Period size: 29 Copynumber: 3.8 Consensus size: 29
104503 TTTATGGTGT
** * *
104513 TTCGGGGTCGAAAA-GGGGATTTTTGGGAG
1 TTCGGGGTC-AAAATGGTAATTTTTAGAAG
104542 TTCGAGGGT-AAAATGGTAATTTTTAGAAGG
1 TTCG-GGGTCAAAATGGTAATTTTTAGAA-G
* *
104572 TTCGGGGTCAAAATTGG-GATTTTTGGAAG
1 TTCGGGGTCAAAA-TGGTAATTTTTAGAAG
*
104601 TTCGAGG-CTAAAATGGTAATTTTT
1 TTCGGGGTC-AAAATGGTAATTTTT
104625 GGACAGTCTG
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
28 8 0.12
29 35 0.51
30 22 0.32
31 3 0.04
ACGTcount: A:0.27, C:0.06, G:0.33, T:0.34
Consensus pattern (29 bp):
TTCGGGGTCAAAATGGTAATTTTTAGAAG
Found at i:105638 original size:4 final size:4
Alignment explanation
Indices: 105629--105654 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
105619 ACTTTTCGTT
105629 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
105655 ATTAATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:105666 original size:12 final size:12
Alignment explanation
Indices: 105638--105678 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 12
105628 TTTTATTTAT
*
105638 TTAT-TTATTTA
1 TTATATTATTAA
105649 TT-TATTATTAA
1 TTATATTATTAA
105660 TTATATTATTAA
1 TTATATTATTAA
105672 TTA-ATTA
1 TTATATTA
105679 ATAAACATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 1 0.04
11 14 0.52
12 12 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATATTATTAA
Found at i:106477 original size:11 final size:11
Alignment explanation
Indices: 106460--106528 Score: 68
Period size: 12 Copynumber: 6.2 Consensus size: 11
106450 TATTGGACTT
*
106460 TTTAATTTAAA
1 TTTAAATTAAA
*
106471 -TTAAATTTAA
1 TTTAAATTAAA
*
106481 TATTAATTTAAA
1 T-TTAAATTAAA
106493 TTTAAATTTAAA
1 TTTAAA-TTAAA
*
106505 TTTAAATCAAA
1 TTTAAATTAAA
*
106516 TTTAAAATAAA
1 TTTAAATTAAA
106527 TT
1 TT
106529 AAAAAGGGCC
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
10 8 0.17
11 19 0.40
12 20 0.43
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:106480 original size:6 final size:6
Alignment explanation
Indices: 106463--106521 Score: 72
Period size: 6 Copynumber: 10.3 Consensus size: 6
106453 TGGACTTTTT
106463 AATTTA AA-TTA AATTT- AATATT- AATTTA AATTTA AATTTA AATTTA
1 AATTTA AATTTA AATTTA AAT-TTA AATTTA AATTTA AATTTA AATTTA
*
106509 AA-TCA AATTTA AA
1 AATTTA AATTTA AA
106522 ATAAATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 14 0.30
6 33 0.70
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:106516 original size:17 final size:17
Alignment explanation
Indices: 106463--106528 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
106453 TGGACTTTTT
106463 AATTTAAATTAAATTT-
1 AATTTAAATTAAATTTA
*
106479 AATATTAATTTAAATTTA
1 AAT-TTAAATTAAATTTA
*
106497 AATTTAAATTTAAA-TCA
1 AATTTAAA-TTAAATTTA
*
106514 AATTTAAAATAAATT
1 AATTTAAATTAAATT
106529 AAAAAGGGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
16 7 0.17
17 27 0.64
18 8 0.19
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTAAATTAAATTTA
Found at i:107122 original size:211 final size:211
Alignment explanation
Indices: 106758--107387 Score: 1071
Period size: 211 Copynumber: 3.0 Consensus size: 211
106748 TCGTTTTTAC
* * * **
106758 TGATTTGGTCTTCTTCTCAGTATTTCATCAGGAAGATGACTGCATCGTTTGTTTCGATTCGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCGTCAGGAAGATGACCGCATCGTTTGTTTTAATTCGCTTC
** * * * *
106823 TCTATATCTCATCAGGAAGATGAGTTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
66 TCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
*
106888 TATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
131 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
*
106953 GAGCCTCATTTGGGTT
196 GAGCCTCGTTTGGGTT
*
106969 TGATTTGGTCTTCTTCTCAGTATCTCGTCCGGAAGATGACCGCATCGTTTGTTTTAATTCGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCGTCAGGAAGATGACCGCATCGTTTGTTTTAATTCGCTTC
*
107034 TCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAACTAACCTTT
66 TCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
* *
107099 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGAGGTTTGAAGATTTTGCTCGTTTC
131 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
107164 GAGCCTCGTTTGGGTT
196 GAGCCTCGTTTGGGTT
* *
107180 TGATTTGGTCTTCTTCTCAGTATCTCGTCAAGAAGATGACCGCATTGTTTGTTTTAATTCGCTTC
1 TGATTTGGTCTTCTTCTCAGTATCTCGTCAGGAAGATGACCGCATCGTTTGTTTTAATTCGCTTC
*
107245 TCCGTATCTCATCAATAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
66 TCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
*
107310 TATTGCTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
131 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
107375 GAGCCTCGTTTGG
196 GAGCCTCGTTTGG
107388 ATCTTCTTCT
Statistics
Matches: 394, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
211 394 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (211 bp):
TGATTTGGTCTTCTTCTCAGTATCTCGTCAGGAAGATGACCGCATCGTTTGTTTTAATTCGCTTC
TCCGTATCTCATCAAGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
TATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTC
GAGCCTCGTTTGGGTT
Found at i:111776 original size:25 final size:26
Alignment explanation
Indices: 111742--111790 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
111732 CTCATATTAT
*
111742 TGATATTTGGGGATTTGT-CAAAGGA
1 TGATATTTGGGGATCTGTCCAAAGGA
111767 TGATATTTGGGGATCTGTCCAAAG
1 TGATATTTGGGGATCTGTCCAAAG
111791 AGGAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.35
Consensus pattern (26 bp):
TGATATTTGGGGATCTGTCCAAAGGA
Found at i:118536 original size:59 final size:59
Alignment explanation
Indices: 118444--118784 Score: 540
Period size: 59 Copynumber: 5.8 Consensus size: 59
118434 GGATCACCAT
*
118444 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTTA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCA
*
118503 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGTAGGTTC-AGGGTCA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGA-GGTCA
* * * *
118562 AAAATGGGATTTTTTGAAGTTCGGGAGTAAAATGGTAATTTTTGGAAGGTTTGGGGTCA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCA
* * *
118621 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGAAATTTTTGGAAGGTTTGGGGTCA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCA
* * *
118680 AAAATAGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAGGTTCGACGTCA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCA
* *
118739 AAAATGGGATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGGA
1 AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGA
118785 CAGTCTAGAG
Statistics
Matches: 260, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
58 1 0.00
59 259 1.00
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.34
Consensus pattern (59 bp):
AAAATGGGATTTTTGGAAGTTCGGGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCA
Found at i:119802 original size:16 final size:16
Alignment explanation
Indices: 119782--119814 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
119772 ATTTATTTAG
119782 TTAT-TTATT-ATTAA
1 TTATATTATTAATTAA
119796 TTATATTATTAATTAA
1 TTATATTATTAATTAA
119812 TTA
1 TTA
119815 ATAAACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 5 0.29
16 8 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATATTATTAATTAA
Found at i:119911 original size:30 final size:30
Alignment explanation
Indices: 119877--119934 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
119867 AATATATAAT
119877 GTATGTATGCGTTTATGTCAAAATACTTTA
1 GTATGTATGCGTTTATGTCAAAATACTTTA
119907 GTATGTATGCGTTTATGTCAAAATACTT
1 GTATGTATGCGTTTATGTCAAAATACTT
119935 GGGATGACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.43
Consensus pattern (30 bp):
GTATGTATGCGTTTATGTCAAAATACTTTA
Found at i:120576 original size:6 final size:6
Alignment explanation
Indices: 120565--120622 Score: 86
Period size: 6 Copynumber: 10.2 Consensus size: 6
120555 TTTATTGACT
*
120565 TTTAAA TTTAAA -TTAAA TTT-AA TTTAAA TTTAAA ATT-AA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
120610 TTTAAA TTTAAA T
1 TTTAAA TTTAAA T
120623 CAAATTAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
5 14 0.30
6 33 0.70
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:120582 original size:11 final size:11
Alignment explanation
Indices: 120566--120639 Score: 87
Period size: 11 Copynumber: 6.6 Consensus size: 11
120556 TTATTGACTT
120566 TTAAATTTAAA
1 TTAAATTTAAA
*
120577 TTAAATTTAAT
1 TTAAATTTAAA
120588 TTAAATTTAAAA
1 TTAAATTT-AAA
120600 TT-AATTTAAA
1 TTAAATTTAAA
120610 TTTAAATTTAAA
1 -TTAAATTTAAA
* *
120622 TCAAATTAAAA
1 TTAAATTTAAA
*
120633 ATAAATT
1 TTAAATT
120640 AAAAAGGGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
10 3 0.06
11 39 0.72
12 12 0.22
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:120585 original size:17 final size:16
Alignment explanation
Indices: 120565--120642 Score: 75
Period size: 17 Copynumber: 4.7 Consensus size: 16
120555 TTTATTGACT
120565 TTTAAATTTAAATTAAA
1 TTTAAA-TTAAATTAAA
*
120582 TTTAATTTAAATTTAAA
1 TTTAAATTAAA-TTAAA
* *
120599 ATTAATTTAAATTTAAA
1 TTTAAATTAAA-TTAAA
*
120616 TTTAAATCAAATTAAA
1 TTTAAATTAAATTAAA
**
120632 AATAAATTAAA
1 TTTAAATTAAA
120643 AAGGGCTCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
16 18 0.35
17 34 0.65
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAATTAAATTAAA
Found at i:124981 original size:71 final size:70
Alignment explanation
Indices: 124857--125059 Score: 262
Period size: 71 Copynumber: 2.9 Consensus size: 70
124847 ACGGATTAAA
* * * *
124857 GGTCAGGTGGCTGAGATCTTGTATTTGTTACGAATTCTCTACAGTATCTTGAGTCACTATAAAGT
1 GGTCCGGTGGCTGAGATCTTGCATTTGTTACG-ATTCTCTACAGCATCGTGAGTCACTATAAAGT
124922 GAAACT
65 GAAACT
* *
124928 GTTCTGGTGGCTGAGATCTTGCATTTGTTACAGATTCTCTACAGCATCGTGAGTCACTATAAAGT
1 GGTCCGGTGGCTGAGATCTTGCATTTGTTAC-GATTCTCTACAGCATCGTGAGTCACTATAAAGT
124993 GAAACT
65 GAAACT
** * * ** *
124999 GGTCCAATGGTTGAGATCCTGCATTTGTTGTGGATTCTCTACAGCATCGTGAGTCATTATA
1 GGTCCGGTGGCTGAGATCTTGCATTTGTT-ACGATTCTCTACAGCATCGTGAGTCACTATA
125060 TGTGAAATGA
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
71 115 0.99
72 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (70 bp):
GGTCCGGTGGCTGAGATCTTGCATTTGTTACGATTCTCTACAGCATCGTGAGTCACTATAAAGTG
AAACT
Found at i:130862 original size:28 final size:28
Alignment explanation
Indices: 130822--130876 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
130812 AATATCTGAT
130822 TTACTCCCTGTTGACCCAAAGGTCATGC
1 TTACTCCCTGTTGACCCAAAGGTCATGC
*
130850 TTACTCCCTGTTGACCTAAAGGTCATG
1 TTACTCCCTGTTGACCCAAAGGTCATG
130877 ATGCTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (28 bp):
TTACTCCCTGTTGACCCAAAGGTCATGC
Done.