Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013274.1 Kokia drynarioides strain JFW-HI SEQ_128295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 160686
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Warning! 5 characters in sequence are not A, C, G, or T
Found at i:9940 original size:24 final size:24
Alignment explanation
Indices: 9854--9928 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
9844 AGAAATAATC
*
9854 TTTCAATTAAACTCTATTTAATTG
1 TTTCAATTAAACTCTATTTATTTG
* *
9878 TTTCAATTAAGCTCTGTTTATTTG
1 TTTCAATTAAACTCTATTTATTTG
9902 TTTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTATTTATTTG
9926 TTT
1 TTT
9929 GAGTCAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTATTTATTTG
Found at i:10962 original size:24 final size:24
Alignment explanation
Indices: 10889--10963 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
10879 AGAAATAATC
*
10889 TTTCAGTTAAACTCTGTTTAATTG
1 TTTCAATTAAACTCTGTTTAATTG
* * *
10913 TCTCAATTAAACTCTATTTATTTG
1 TTTCAATTAAACTCTGTTTAATTG
* *
10937 TTTCAATTAAACTTTGTTTACTTG
1 TTTCAATTAAACTCTGTTTAATTG
10961 TTT
1 TTT
10964 GAGTCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.53
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTAATTG
Found at i:16572 original size:36 final size:36
Alignment explanation
Indices: 16464--16577 Score: 113
Period size: 36 Copynumber: 3.1 Consensus size: 36
16454 CTTCATCTAA
* *
16464 TCTCCCTCCCTCTCTCTCTCTCTATCTCTCCCTCCC
1 TCTCTCTCCTTCTCTCTCTCTCTATCTCTCCCTCCC
* * * *
16500 TCCTTCTCTGTCTTTCTCTTTCCCTCCATC-CATCCCTCCC
1 T-C-TCTC--TCCTTCTCTCTCTCTCTATCTC-TCCCTCCC
*
16540 TCTCTCTCCTTCTCTCTCTCTCTTTCTCTCCCTCCC
1 TCTCTCTCCTTCTCTCTCTCTCTATCTCTCCCTCCC
16576 TC
1 TC
16578 CCCTCTCTCT
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
36 26 0.43
37 2 0.03
38 7 0.11
39 2 0.03
40 24 0.39
ACGTcount: A:0.03, C:0.54, G:0.01, T:0.43
Consensus pattern (36 bp):
TCTCTCTCCTTCTCTCTCTCTCTATCTCTCCCTCCC
Found at i:17080 original size:22 final size:22
Alignment explanation
Indices: 17050--17102 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
17040 CTCTCCTTCT
*
17050 CTCTCTCTCCATCCATCCCTCA
1 CTCTTTCTCCATCCATCCCTCA
* * *
17072 CTCTTTCTCCTTCCTTCCCTCC
1 CTCTTTCTCCATCCATCCCTCA
*
17094 CCCTTTCTC
1 CTCTTTCTC
17103 TCTCCTTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.06, C:0.55, G:0.00, T:0.40
Consensus pattern (22 bp):
CTCTTTCTCCATCCATCCCTCA
Found at i:20057 original size:8 final size:8
Alignment explanation
Indices: 20037--20076 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
20027 CTTCTTCTAA
20037 TCTCCCT-
1 TCTCCCTC
20044 TCCTCCCTC
1 T-CTCCCTC
20053 TCTCCCTC
1 TCTCCCTC
*
20061 TCTCTCTC
1 TCTCCCTC
20069 TCTCCCTC
1 TCTCCCTC
20077 GCTCTCACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 1 0.03
8 27 0.93
9 1 0.03
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (8 bp):
TCTCCCTC
Found at i:20076 original size:16 final size:16
Alignment explanation
Indices: 20037--20089 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
20027 CTTCTTCTAA
*
20037 TCTCCCT-TCCTCCCTC
1 TCTCCCTCT-CTCTCTC
20053 TCTCCCTCTCTCTCTC
1 TCTCCCTCTCTCTCTC
* *
20069 TCTCCCTCGCTCTCAC
1 TCTCCCTCTCTCTCTC
20085 TCTCC
1 TCTCC
20090 ATATGTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
16 32 0.97
17 1 0.03
ACGTcount: A:0.02, C:0.58, G:0.02, T:0.38
Consensus pattern (16 bp):
TCTCCCTCTCTCTCTC
Found at i:22099 original size:52 final size:52
Alignment explanation
Indices: 22037--22140 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
22027 ACACTTGTAC
*
22037 GTCGATAAACTAATTACCACTGAAATTATAAATCATTACAATGAAAACAAAA
1 GTCGATAAACTAATTACCACTGAAATTATAAATCATTACAACGAAAACAAAA
*
22089 GTCGATAAACTAGTTACCACTGAAATTATAAATCATTACAACGAAAACAAAA
1 GTCGATAAACTAATTACCACTGAAATTATAAATCATTACAACGAAAACAAAA
22141 AAATCGGTTC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24
Consensus pattern (52 bp):
GTCGATAAACTAATTACCACTGAAATTATAAATCATTACAACGAAAACAAAA
Found at i:32256 original size:15 final size:14
Alignment explanation
Indices: 32231--32262 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
32221 CTATTGATTA
32231 TTGTCGTAACTCCC
1 TTGTCGTAACTCCC
32245 TTGTCTGTAACTCCC
1 TTGTC-GTAACTCCC
32260 TTG
1 TTG
32263 ATTTTAGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (14 bp):
TTGTCGTAACTCCC
Found at i:36161 original size:41 final size:41
Alignment explanation
Indices: 36092--36303 Score: 268
Period size: 41 Copynumber: 5.1 Consensus size: 41
36082 TTGAGTCATA
* *
36092 AGTCTTCCTTAAAC-CATATTCTCATTCTCATCTCGAGACGTG
1 AGTCTTCCTT--ACTCATAATCTCATTCTCATCTCGAGACATG
* * *
36134 AGTCTTCCTTGA-TCAAAATCTCATTCTCATTTTGAGACATG
1 AGTCTTCCTT-ACTCATAATCTCATTCTCATCTCGAGACATG
*
36175 AGTCCTCCTTAGC-CATAATCTCATTCTCATCTCGAGACATG
1 AGTCTTCCTTA-CTCATAATCTCATTCTCATCTCGAGACATG
* *
36216 AGTCTTCCTTATTCACAATCTCATTCTCATCTCGAGACATG
1 AGTCTTCCTTACTCATAATCTCATTCTCATCTCGAGACATG
* *
36257 AGTCTTCCTTACTCATAATCTCTTTCTCATCTTGAGACATG
1 AGTCTTCCTTACTCATAATCTCATTCTCATCTCGAGACATG
*
36298 AATCTT
1 AGTCTT
36304 TCATTTATAC
Statistics
Matches: 148, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
40 1 0.01
41 137 0.93
42 10 0.07
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (41 bp):
AGTCTTCCTTACTCATAATCTCATTCTCATCTCGAGACATG
Found at i:36200 original size:82 final size:81
Alignment explanation
Indices: 36080--36303 Score: 297
Period size: 82 Copynumber: 2.7 Consensus size: 81
36070 CCTTATGCTC
* * * *
36080 TTTTGAGTCATAAGTCTTCCTTAAACCATATTCTCATTCTCATCTCGAGACGTGAGTCTTCCTTG
1 TTTTGAGACATGAGTCTTCCTT--ACCATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTT-
36145 A-TCAAAATCTCATTCTCA
63 ATTCAAAATCTCATTCTCA
*
36163 TTTTGAGACATGAGTCCTCCTTAGCCATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTAT
1 TTTTGAGACATGAGTCTTCCTTA-CCATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTAT
*
36228 TCACAATCTCATTCTCA
65 TCAAAATCTCATTCTCA
* * * * *
36245 TCTCGAGACATGAGTCTTCCTTACTCATAATCTCTTTCTCATCTTGAGACATGAATCTT
1 TTTTGAGACATGAGTCTTCCTTAC-CATAATCTCATTCTCATCTCGAGACATGAGTCTT
36304 TCATTTATAC
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
81 3 0.02
82 104 0.83
83 19 0.15
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (81 bp):
TTTTGAGACATGAGTCTTCCTTACCATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTATT
CAAAATCTCATTCTCA
Found at i:36316 original size:82 final size:80
Alignment explanation
Indices: 36092--36350 Score: 286
Period size: 82 Copynumber: 3.1 Consensus size: 80
36082 TTGAGTCATA
* * * *
36092 AGTCTTCCTTAAACCATATTCTCATTCTCATCTCGAGACGTGAGTCTTCCTTGATCAAAATCTCA
1 AGTCTTCCTT--ACCATAATCTCATTCTCATCTCGAGACATGAGTCTT-CTTTATCACAATCTCA
* *
36157 TTCTCATTTTGAGACATG
63 TTCTCATCTCGAGACATG
* *
36175 AGTCCTCCTTAGCCATAATCTCATTCTCATCTCGAGACATGAGTCTTCCTTATTCACAATCTCAT
1 AGTCTTCCTTA-CCATAATCTCATTCTCATCTCGAGACATGAGTCTTCTTTA-TCACAATCTCAT
36240 TCTCATCTCGAGACATG
64 TCTCATCTCGAGACATG
* * * *
36257 AGTCTTCCTTACTCATAATCTCTTTCTCATCTTGAGACATGAATCTTTCATTTAT-ACAATTTTT
1 AGTCTTCCTTAC-CATAATCTCATTCTCATCTCGAGACATGAGTC-TTC-TTTATCACAA--TCT
* * *
36321 CATGCTCAACCCGAGACATG
61 CATTCTCATCTCGAGACATG
36341 AGTCTTCCTT
1 AGTCTTCCTT
36351 TTTATACACC
Statistics
Matches: 152, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
81 5 0.03
82 102 0.67
83 13 0.09
84 32 0.21
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (80 bp):
AGTCTTCCTTACCATAATCTCATTCTCATCTCGAGACATGAGTCTTCTTTATCACAATCTCATTC
TCATCTCGAGACATG
Found at i:37126 original size:22 final size:21
Alignment explanation
Indices: 37079--37126 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
37069 GACTTTCATA
*
37079 ATTAACTTAATTAATCATTTT
1 ATTAACTTAATTAATCATATT
* * *
37100 TTTAACCTTAATTTATCCTATT
1 ATTAA-CTTAATTAATCATATT
37122 ATTAA
1 ATTAA
37127 TCAATATTTG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:43251 original size:41 final size:41
Alignment explanation
Indices: 43156--43465 Score: 345
Period size: 41 Copynumber: 7.5 Consensus size: 41
43146 TTATGCTCTT
* * ** * *
43156 TCGAGTCATAAGTCTTCCTTTAACCATATTCTTATTCTCATC
1 TCGAGACATGAGTCTTCC-TTATTCATAATCTCATTCTCATC
* * * *
43198 TCGAGACGTGAGTCTTCTTTGA-TCAAAATCTCATTCTCATT
1 TCGAGACATGAGTCTTCCTT-ATTCATAATCTCATTCTCATC
* * * *
43239 TCAAAACATGAGTCTTCCTTAGTCATAAACTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
*
43280 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTTTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
43321 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
* *
43362 TCGAGACATAAGTCTTCCTTATTCATAATCTTATTCTCATC
1 TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
* * * * * *
43403 TTGAGACATGAGTCTTCCATTTATACA-ATTTTTCATGCTCAAC
1 TCGAGACATGAGTCTTCC--TTATTCATA-ATCTCATTCTCATC
*
43446 CCGAGACATGAGTCTTCCTT
1 TCGAGACATGAGTCTTCCTT
43466 TTTATACAGC
Statistics
Matches: 229, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
40 1 0.00
41 181 0.79
42 16 0.07
43 31 0.14
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39
Consensus pattern (41 bp):
TCGAGACATGAGTCTTCCTTATTCATAATCTCATTCTCATC
Found at i:73863 original size:16 final size:13
Alignment explanation
Indices: 73809--73867 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
73799 CACCCTTTTG
73809 TTTTTTTTTTC--
1 TTTTTTTTTTCAT
* *
73820 -TTTTTTTCTCAA
1 TTTTTTTTTTCAT
73832 TTTTTTTTTTCAT
1 TTTTTTTTTTCAT
73845 TTTTTTCTTTTCGACT
1 TTTTTT-TTTTC-A-T
73861 TTTTTTT
1 TTTTTTT
73868 CTAAATAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 9 0.23
13 16 0.41
14 5 0.13
15 2 0.05
16 7 0.18
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTTTTTTTTCAT
Found at i:74811 original size:6 final size:6
Alignment explanation
Indices: 74792--74838 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
74782 TTGCGTAATT
*
74792 AAAATA AAACTA AAAAT- AAAAT- AAAAT- AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
74837 AA
1 AA
74839 TATACTAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 15 0.39
6 23 0.61
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:74812 original size:5 final size:5
Alignment explanation
Indices: 74791--74838 Score: 60
Period size: 5 Copynumber: 8.8 Consensus size: 5
74781 ATTGCGTAAT
74791 TAAAA TAAAA CTAAAAA TAAAA TAAAA TAAAA TAAAAA TAAAAA TAAA
1 TAAAA TAAAA -T-AAAA TAAAA TAAAA TAAAA T-AAAA T-AAAA TAAA
74839 TATACTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 23 0.57
6 13 0.32
7 4 0.10
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:78386 original size:15 final size:15
Alignment explanation
Indices: 78366--78404 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
78356 GCACATCAAA
*
78366 CAAGAATTAATATAT
1 CAAGAATTAATAAAT
*
78381 CAAGAA-TACTAAAT
1 CAAGAATTAATAAAT
78395 CAAGAATTAA
1 CAAGAATTAA
78405 GCACACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (15 bp):
CAAGAATTAATAAAT
Found at i:80336 original size:20 final size:20
Alignment explanation
Indices: 80295--80336 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
80285 ACAAATGAGC
*
80295 GAATGAGTGAATGAACGGAT
1 GAATGAGTGAATGAACGAAT
*
80315 GAATGAGTGAATGAATGAAT
1 GAATGAGTGAATGAACGAAT
80335 GA
1 GA
80337 TTGAAATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.33, T:0.21
Consensus pattern (20 bp):
GAATGAGTGAATGAACGAAT
Found at i:86933 original size:138 final size:139
Alignment explanation
Indices: 86592--86971 Score: 405
Period size: 138 Copynumber: 2.7 Consensus size: 139
86582 AATTTGTTAA
* * * * * * **
86592 CATACGCTTTGGCCAATTTTTTATATAAGGGTTGGAATATGCATGTCTAAAATAACGCTTAAATA
1 CATACGCTTT-GACAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAAGCAACGCTTAAATA
* * * * *
86657 AGAGTTGTTTTTGTCCAACACTAT-ACTGACGCTTTTGAGGACGACACTTTCCTAAGTGTTGGGA
65 AAAGTTGGTTTTGTCCAACACTATGAC-AAC-CTTTTGACGACGACACTTTCCTAAATGTTGGGA
*
86721 TAAACTTGCCGG
128 TAAACTTACCGG
* *
86733 CATACGCTTTTGTCAACTCTTTTGTATAAGGGTTGGGATATGCAT-ACTTAAGACAACGCTTAAA
1 CATACGC-TTTGACAACTC-TTTGTATAAGGGTTGGGATATGCATGACTAAAG-CAACGCTTAAA
*
86797 TAAAAGTTGGCTTTGT-CAACACTATGACAACACTTTTG-CGACGACACTTTCCTAAATGTT-GG
63 TAAAAGTTGGTTTTGTCCAACACTATGACAAC-CTTTTGACGACGACACTTTCCTAAATGTTGGG
* *
86859 ATAGA-TTAACTGG
127 ATAAACTT-ACCGG
* *
86872 CATACGCTTTGACTAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAAGCAACACTTAAATA
1 CATACGCTTTGAC-AACTCTTTGTATAAGGGTTGGGATATGCATGACTAAAGCAACGCTTAAATA
* * *
86937 AGAA-TTAGTTTTGTCCAACATTATGTCAACCTTTT
65 A-AAGTTGGTTTTGTCCAACACTATGACAACCTTTT
86972 TAAGGTTTGC
Statistics
Matches: 203, Mismatches: 27, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
138 58 0.29
139 41 0.20
140 20 0.10
141 33 0.16
142 51 0.25
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (139 bp):
CATACGCTTTGACAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAAGCAACGCTTAAATAA
AAGTTGGTTTTGTCCAACACTATGACAACCTTTTGACGACGACACTTTCCTAAATGTTGGGATAA
ACTTACCGG
Found at i:87034 original size:36 final size:36
Alignment explanation
Indices: 86963--87075 Score: 140
Period size: 36 Copynumber: 3.1 Consensus size: 36
86953 AACATTATGT
*
86963 CAACCTTTTTAAGGTT-TGCTTTAGACAAGATTTATCC
1 CAACCTTTTTAAGGTTGT-C-TTAGACAAGACTTATCC
*
87000 CAACCTTTTTAAGGTTGTCTTAGACAAGACTTATCA
1 CAACCTTTTTAAGGTTGTCTTAGACAAGACTTATCC
* * * *
87036 CAACCTTTTTAAAGTTGTTTTAGACGAGTC-TATCC
1 CAACCTTTTTAAGGTTGTCTTAGACAAGACTTATCC
87071 CAACC
1 CAACC
87076 CTTCAATAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
35 9 0.13
36 41 0.60
37 17 0.25
38 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.37
Consensus pattern (36 bp):
CAACCTTTTTAAGGTTGTCTTAGACAAGACTTATCC
Found at i:87217 original size:24 final size:24
Alignment explanation
Indices: 87190--87246 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
87180 TGTTGGGAAC
*
87190 TTTATTTATCTT-ATAATTTAGAGT
1 TTTATTTATCTTGATAATTTAGA-A
* *
87214 TTTATTGAT-TTGTTAATTTAGAA
1 TTTATTTATCTTGATAATTTAGAA
87237 TTTATTTATC
1 TTTATTTATC
87247 CTGAACTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.60
Consensus pattern (24 bp):
TTTATTTATCTTGATAATTTAGAA
Found at i:87681 original size:26 final size:26
Alignment explanation
Indices: 87646--87697 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
87636 TTATTAAAAG
87646 ATTAAATAATATTGCTTCATATTAAT
1 ATTAAATAATATTGCTTCATATTAAT
87672 ATTAAATAATATTGCTTCATATTAAT
1 ATTAAATAATATTGCTTCATATTAAT
87698 TATGGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (26 bp):
ATTAAATAATATTGCTTCATATTAAT
Found at i:88480 original size:27 final size:27
Alignment explanation
Indices: 88421--88473 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
88411 AAACCTTGAG
* *
88421 AGGTTCGAGGTTTAAGGTTTAAGATTC
1 AGGTTCGAGGTTCAAGGTTCAAGATTC
88448 AGGGTTCGA-GTTCAAGGTTCAAGATT
1 A-GGTTCGAGGTTCAAGGTTCAAGATT
88474 GTAGGTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.26, C:0.09, G:0.30, T:0.34
Consensus pattern (27 bp):
AGGTTCGAGGTTCAAGGTTCAAGATTC
Found at i:88671 original size:24 final size:23
Alignment explanation
Indices: 88637--88682 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
88627 AATTGAAAAG
88637 AAAAAACGATGTTTGTTTATAATTT
1 AAAAAACGATGTTT-TTT-TAATTT
88662 AAAAAA-GATGTTTTTTTAATT
1 AAAAAACGATGTTTTTTTAATT
88683 AGTCTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 3 0.14
24 7 0.33
25 6 0.29
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (23 bp):
AAAAAACGATGTTTTTTTAATTT
Found at i:93179 original size:57 final size:58
Alignment explanation
Indices: 93113--93234 Score: 185
Period size: 59 Copynumber: 2.1 Consensus size: 58
93103 TTTGGATTAT
* *
93113 GTTTATGA-GTGTTTTTAAGATTAAAATTATATTTAGGTTTAAAAATATTT-GTGTTTA
1 GTTTATGAGGTGTTTTTAAGAATAAAATTATATTTAGGTTTAAAAATATTTAGAG-TTA
*
93170 GTTTATGAGTGTGTTTTTAAGAATAAAATTATATTTTGGTTTAAAAATATTTAGAGTTA
1 GTTTATGAG-GTGTTTTTAAGAATAAAATTATATTTAGGTTTAAAAATATTTAGAGTTA
93229 GTTTAT
1 GTTTAT
93235 TGATGAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 8 0.14
59 49 0.83
60 2 0.03
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (58 bp):
GTTTATGAGGTGTTTTTAAGAATAAAATTATATTTAGGTTTAAAAATATTTAGAGTTA
Found at i:95073 original size:17 final size:17
Alignment explanation
Indices: 95051--95085 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
95041 AGAAGGTGTG
95051 TTTGATGGGAGTGTGGT
1 TTTGATGGGAGTGTGGT
95068 TTTGATGGGAGTGTGGT
1 TTTGATGGGAGTGTGGT
95085 T
1 T
95086 GTGCACGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.46, T:0.43
Consensus pattern (17 bp):
TTTGATGGGAGTGTGGT
Found at i:95455 original size:38 final size:38
Alignment explanation
Indices: 95408--95872 Score: 316
Period size: 38 Copynumber: 12.5 Consensus size: 38
95398 CGCGTCTATT
* * * *
95408 TCAATCTTTTTTAAAGGTTGCTTTAGACAAAGTGTATT
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* * * *
95446 TCAACCTTTTTTAAAAGTT-ATGTTGGACAAAGTTTATC
1 TCAACCTTTTTTAAAGGTTGCT-TTAGACAAGGTTTATC
* * *
95484 TCAACCTTTTTAAAAGGTTACATTAGACAAGGTTTATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* * * * *
95522 -CTAA-CTTATTTAAAAGGTTGCCTTAAATAAGGTCTATC
1 TC-AACCTT-TTTTAAAGGTTGCTTTAGACAAGGTTTATC
* * * * * * *
95560 TTAA-ATTTTTT-AAGGTTACCTTAG--ATGGCTCTATA
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGG-TTTATC
* * * * ** *
95595 TCAACTTTTTTTAAAAGTTGCCTTAGATAATATCTATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* *
95633 -CTAACC--TTTTAAAGGTTGCATTAGAC-ATGTTTATC
1 TC-AACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* * * *
95668 TCAACCTTTTTTAAAGGTTGCCTTAAATAAGGTATATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
*
95706 CCAACC-TTTTT-AAGGTTGCTTTAGACAAGGTTTATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* *
95742 TCAACCTATTTTAAAGGTTGCTTTAGACAGGGTTTATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* *
95780 CCAACC-TTTTT-AAGGTTGCTTTAGACGA-GTTTATC
1 TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
* * * ***
95815 -CTAACATTTTTTTAAAAGGTTACCTTAGACAAGACATATC
1 TC-AAC-CTTTTTT-AAAGGTTGCTTTAGACAAGGTTTATC
95855 TCAACCTTTTTTAAAGGT
1 TCAACCTTTTTTAAAGGT
95873 CAGTATTGAC
Statistics
Matches: 340, Mismatches: 63, Indels: 48
0.75 0.14 0.11
Matches are distributed among these distances:
34 4 0.01
35 29 0.09
36 76 0.22
37 55 0.16
38 147 0.43
39 21 0.06
40 7 0.02
41 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (38 bp):
TCAACCTTTTTTAAAGGTTGCTTTAGACAAGGTTTATC
Found at i:95736 original size:36 final size:36
Alignment explanation
Indices: 95629--95825 Score: 218
Period size: 36 Copynumber: 5.4 Consensus size: 36
95619 AGATAATATC
* * * *
95629 TATCCTAACCTTTTAAAGGTTGCATTAGAC-ATGTT
1 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGGTT
* * * * *
95664 TATCTCAACCTTTTTTAAAGGTTGCCTTAAATAAGGTA
1 TATCCCAACC-TTTTT-AAGGTTGCTTTAGACAAGGTT
95702 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGGTT
1 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGGTT
* *
95738 TATCTCAACCTATTTTAAAGGTTGCTTTAGACAGGGTT
1 TATCCCAACCT-TTTT-AAGGTTGCTTTAGACAAGGTT
*
95776 TATCCCAACCTTTTTAAGGTTGCTTTAGACGA-GTT
1 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGGTT
* *
95811 TATCCTAACATTTTT
1 TATCCCAACCTTTTT
95826 TTAAAAGGTT
Statistics
Matches: 137, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
35 24 0.18
36 46 0.34
37 25 0.18
38 42 0.31
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (36 bp):
TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGGTT
Found at i:95747 original size:74 final size:74
Alignment explanation
Indices: 95415--95865 Score: 340
Period size: 73 Copynumber: 6.1 Consensus size: 74
95405 ATTTCAATCT
* * * * *** * * *
95415 TTTTTAAAGGTTGCTTTAGACAAAGTGTATTTCAACCTTTTTTAAAAGTTATGTTGGACAAAGTT
1 TTTTT-AAGGTTGCTTTAGACAAGGTTTATCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTA
*
95480 TATCTCAACC
65 TATCCCAACC
* * * * *
95490 TTTTTAAAAGGTTACATTAGACAAGGTTTATC-CTAA-CTTATTTAAAAGGTTGCCTTAAATAAG
1 TTTTT--AAGGTTGCTTTAGACAAGGTTTATCTC-AACCTT-TTTTAAAGGTTGCCTTAGACAAG
* ** **
95553 GTCTATCTTAAAT
62 GTATATCCCAACC
* * * * * * * * ** *
95566 TTTTTAAGGTTACCTTAG--ATGGCTCTATATCAACTTTTTTTAAAAGTTGCCTTAGATAATATC
1 TTTTTAAGGTTGCTTTAGACAAGG-TTTATCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTA
*
95629 TATCCTAACC
65 TATCCCAACC
* * * * *
95639 TTTTAAAGGTTGCATTAGAC-ATGTTTATCTCAACCTTTTTTAAAGGTTGCCTTAAATAAGGTAT
1 TTTTTAAGGTTGCTTTAGACAAGGTTTATCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTAT
95703 ATCCCAACC
66 ATCCCAACC
* * * *
95712 TTTTTAAGGTTGCTTTAGACAAGGTTTATCTCAACCTATTTTAAAGGTTGCTTTAGACAGGGTTT
1 TTTTTAAGGTTGCTTTAGACAAGGTTTATCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTAT
95777 ATCCCAACC
66 ATCCCAACC
* * * *
95786 TTTTTAAGGTTGCTTTAGACGA-GTTTATC-CTAACATTTTTTTAAAAGGTTACCTTAGACAAGA
1 TTTTTAAGGTTGCTTTAGACAAGGTTTATCTC-AAC-CTTTTTT-AAAGGTTGCCTTAGACAAGG
* *
95849 CATATCTCAACC
63 TATATCCCAACC
95861 TTTTT
1 TTTTT
95866 TAAAGGTCAG
Statistics
Matches: 300, Mismatches: 64, Indels: 24
0.77 0.16 0.06
Matches are distributed among these distances:
72 4 0.01
73 118 0.39
74 88 0.29
75 39 0.13
76 51 0.17
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (74 bp):
TTTTTAAGGTTGCTTTAGACAAGGTTTATCTCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTAT
ATCCCAACC
Found at i:109166 original size:13 final size:13
Alignment explanation
Indices: 109148--109186 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
109138 CTGTGAAGGA
109148 TATTAATCTAAAC
1 TATTAATCTAAAC
*
109161 TATTAAACTAAAC
1 TATTAATCTAAAC
109174 TAAATTAATCTAA
1 T--ATTAATCTAA
109187 GTTGAAGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 13 0.59
15 9 0.41
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (13 bp):
TATTAATCTAAAC
Found at i:117241 original size:39 final size:40
Alignment explanation
Indices: 117187--117262 Score: 127
Period size: 39 Copynumber: 1.9 Consensus size: 40
117177 GCAATTTTTT
* *
117187 AAAACTTTTATTTTTAACTA-TTTTAGAATATTTACAGAA
1 AAAACTTTTATTTTTAACCATTTTTAAAATATTTACAGAA
117226 AAAACTTTTATTTTTAACCATTTTTAAAATATTTACA
1 AAAACTTTTATTTTTAACCATTTTTAAAATATTTACA
117263 ATATTATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 19 0.56
40 15 0.44
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (40 bp):
AAAACTTTTATTTTTAACCATTTTTAAAATATTTACAGAA
Found at i:141827 original size:40 final size:40
Alignment explanation
Indices: 141790--141888 Score: 135
Period size: 40 Copynumber: 2.5 Consensus size: 40
141780 AGAAAACGCT
* * *
141790 GCAAAAGGTAAAGTATTAGCAGTATTTTTCCATAAACGTC
1 GCAAAAGGTAAAGAAATAGCAGCATTTTTCCATAAACGTC
* * * *
141830 GTAATAGGTAAAGAAATAGCGGCGTTTTTCCATAAACGTC
1 GCAAAAGGTAAAGAAATAGCAGCATTTTTCCATAAACGTC
141870 GCAAAAGGTAAAGAAATAG
1 GCAAAAGGTAAAGAAATAG
141889 TGACATTTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (40 bp):
GCAAAAGGTAAAGAAATAGCAGCATTTTTCCATAAACGTC
Found at i:144748 original size:13 final size:13
Alignment explanation
Indices: 144730--144755 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
144720 TCCAAAAGCT
144730 TTATTAGCAAGGA
1 TTATTAGCAAGGA
144743 TTATTAGCAAGGA
1 TTATTAGCAAGGA
144756 AAAATCTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
TTATTAGCAAGGA
Found at i:145595 original size:43 final size:43
Alignment explanation
Indices: 145547--145843 Score: 395
Period size: 43 Copynumber: 7.0 Consensus size: 43
145537 GATAGTGGCA
* *
145547 TTTGTGAGAAAAGCG-TCGTTAAAGACCATGTTCTTTAGCGGCG
1 TTTGTGAGAAAAGCGCT-GCTAAAGACCATGTTCTTCAGCGGCG
* *
145590 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTTAGCGGCT
1 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
145633 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
1 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
* *
145676 TTTTTGAGAAAAGCGGCT-CTAAGGACCATGTTCTTCAGCGGCG
1 TTTGTGAGAAAAGC-GCTGCTAAAGACCATGTTCTTCAGCGGCG
*
145719 TTTGTGAGAAAAGCACTGCTAAAGACCATGTTCTTCAGCGGCG
1 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
* * * *
145762 TTTGTG-GGAAAGCACCGCTAAAGACCATGTTCTTTAGCGGCG
1 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
* ** ** *
145804 TTTGTG-GGAAAGTACCACTAAAGACCACGTTCTTCAGCGG
1 TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGG
145844 AGGTTTTCTT
Statistics
Matches: 235, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
42 71 0.30
43 160 0.68
44 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
TTTGTGAGAAAAGCGCTGCTAAAGACCATGTTCTTCAGCGGCG
Found at i:146592 original size:20 final size:19
Alignment explanation
Indices: 146567--146605 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
146557 AAAAAAAAGA
146567 GAAAAAAGAAGAAAATGAAAT
1 GAAAAAA-AAGAAAA-GAAAT
146588 GAAAAAAAAGAAAAGAAA
1 GAAAAAAAAGAAAAGAAA
146606 AGAGCATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (19 bp):
GAAAAAAAAGAAAAGAAAT
Found at i:146600 original size:14 final size:14
Alignment explanation
Indices: 146554--146606 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
146544 TAAGATGCTC
146554 AAGAAAAAAAAGAGA
1 AAGAAAAAAAAGA-A
*
146569 AAAAAGAAGAAAATGAA
1 AAGAA-AA-AAAA-GAA
*
146586 ATGAAAAAAAAGAA
1 AAGAAAAAAAAGAA
146600 AAGAAAA
1 AAGAAAA
146607 GAGCATGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 9 0.29
15 8 0.26
16 4 0.13
17 8 0.26
18 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAAGAA
Found at i:146601 original size:5 final size:5
Alignment explanation
Indices: 146554--146608 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
146544 TAAGATGCTC
* *
146554 AAGAA AA-AA AAGAGA AAAAA GAAGAA AATGAA ATGAA AA-AA AAGAA
1 AAGAA AAGAA AAGA-A AAGAA -AAGAA AA-GAA AAGAA AAGAA AAGAA
146600 AAGAA AAGA
1 AAGAA AAGA
146609 GCATGTGTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 8 0.20
5 21 0.51
6 12 0.29
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (5 bp):
AAGAA
Found at i:149842 original size:12 final size:12
Alignment explanation
Indices: 149825--149851 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
149815 ACGTAAGCAT
149825 AATGATGCCATC
1 AATGATGCCATC
149837 AATGATGCCATC
1 AATGATGCCATC
149849 AAT
1 AAT
149852 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (12 bp):
AATGATGCCATC
Found at i:153690 original size:41 final size:41
Alignment explanation
Indices: 153630--153724 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
153620 TGTTCGTAGT
*
153630 GAATTCTTGTCAAGATGGAGATTGTTAGAATTGGGTGACTA
1 GAATTCTTGTTAAGATGGAGATTGTTAGAATTGGGTGACTA
*
153671 GAATTCTTGTTAAGGTGGAGATTGTTAGAATTGGGTGACTA
1 GAATTCTTGTTAAGATGGAGATTGTTAGAATTGGGTGACTA
153712 GAATTCTTGTTAA
1 GAATTCTTGTTAA
153725 AATAAAATTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.37
Consensus pattern (41 bp):
GAATTCTTGTTAAGATGGAGATTGTTAGAATTGGGTGACTA
Found at i:154015 original size:14 final size:14
Alignment explanation
Indices: 153998--154025 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
153988 GTGTGTTCTT
153998 CTTTTTCTGTTTTC
1 CTTTTTCTGTTTTC
154012 CTTTTTCTGTTTTC
1 CTTTTTCTGTTTTC
154026 TTTGCGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.21, G:0.07, T:0.71
Consensus pattern (14 bp):
CTTTTTCTGTTTTC
Found at i:155892 original size:16 final size:17
Alignment explanation
Indices: 155862--155897 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
155852 TTGAATAAGA
155862 AATAAAAATGAAATGAG
1 AATAAAAATGAAATGAG
155879 AATAAAAATG-AATGAG
1 AATAAAAATGAAATGAG
155895 AAT
1 AAT
155898 GATATCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (17 bp):
AATAAAAATGAAATGAG
Found at i:159412 original size:2 final size:2
Alignment explanation
Indices: 159405--159434 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
159395 AATTCGATAA
159405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
159435 GAAATATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160660 original size:2 final size:2
Alignment explanation
Indices: 160653--160686 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
160643 TGGATATTAA
160653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.