Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013276.1 Kokia drynarioides strain JFW-HI SEQ_128297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9651
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Warning! 66 characters in sequence are not A, C, G, or T
Found at i:1219 original size:348 final size:347
Alignment explanation
Indices: 1--6238 Score: 7819
Period size: 347 Copynumber: 18.2 Consensus size: 347
* *
1 TTACATTCAAATTCGAGGCACGAATGGAATGAAAGGTAACCTTTATGTAAATAGATTGCGCAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * * * * *
66 CATATTGGGTGCAATCATACTAGTACTAATGCACCGGATCGCATCAGAACCCCGTAGTTAAGTGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
** * ** * *
131 GCTAAGGCAAGAGTAGTACTAGGATGGGTGACCTTTTGGGAAGTTCTCGTGTTAG-ACCCATC-T
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT-GCACCCCTCTT
* * *
194 TT-TTTATTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTCCAATTTTGAGAAATAGTAAAG
195 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAG
* * *
258 CTTCATGGGATATATGGACATTATTAGCATATTTTTATTTTATTTTTATCCGCGAAAATACTTGT
260 CTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCT
* *
323 TCCCAAGCATTTTTTGGGTATAT
325 TCCCGAGCATTATTTGGGTATAT
* * * *
346 TTACATTCAAATTCGAGGCACGAATTGGATGAAACGTAACCTTTATATAAATAGATTGCACAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * * * * *
411 CACAATTGGTGCGATCAGACCAGCACTAATGCACCGGATCGCATCGGAACCCCGAAGTTAAACGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * * * *
476 GCTTAGGCGACAATTA-TACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTATTGCACCTCTCTT
131 GCTTGGGCGA-GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTT
* * *
540 TT-TGTTTTTTTTCCTTTTGTA-TATTTTATTTATCGAAAATTTGTAATTTTGCGAAATAGTAAA
195 TTGT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAA
* * * *
603 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTATATCCGCGAAAAAACTTG
259 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
* *
668 TTCCTGAGCATT-TTTTGGTATAT
324 TTCCCGAGCATTATTTGGGTATAT
* * * *
691 TTACTTTCAAATTCGAGGCACGAATGGAATGAAACGTAACCTTTATATAAATAGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * ** * * *
756 CATAGTGGGTGCAATCATATTAGTACTAATGCACCGGATCCCATCAGAACTCCGCTGCTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
*
821 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACGTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-TT
*
886 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGAAAATTTGCAATTTTGCGAAATAGTAAAG
195 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAG
* *
951 CTTCATGGGATATATGGACATAATTAGCGTATTTTTATTTTATTTTTATCTGCGAAAATACGTCT
260 CTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCT
1016 TCCCGAGCATTATTTGGGTATAT
325 TCCCGAGCATTATTTGGGTATAT
* * * * *
1039 TTACATCCAAATTCAAGGCACGAATGGGATTAAAGGTAGCCTTTACGTAAATAGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * ** * *
1104 CATAATGAGTGCGATCATACCAGCACTAACGCACCGGATCCCATCAGAACTCTGTTGATAAGTGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * *
1169 TCTTGGGTGAGAGTTGTACTAGGATGGGTGACGTCACT-GGAAGTCCTCGTGTTGCA--------
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTC-CTGGGAAGTCCTCGTGTTGCACCCCTCTT
* *
1225 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATTGTAAATTTGCAATTTTGTGAAATAGTAAAG
195 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAG
* *
1290 CTTCATGGGATATATGGACATTATTAGCGT-TATTTTATTTTATTTTTATCTGCGAAAATACGAC
260 CTTCATGGGATATATGGACATTATTAGCGTAT-TTTTATTTTATTTTTATCCGCGAAAATACGTC
* *
1354 TTCCCGAGCCTTTTTTGGGTATAT
324 TTCCCGAGCATTATTTGGGTATAT
* * * *
1378 TTACATTCAAATTCGAGGCACGAATCGAATGAAAGGTAACATTTATGTAAATAGATTGCGCAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* *************** * * *
1443 CATATTGGGTGC-ANNNNNNNNNNNNNNNTGCATCGGATCCCATCAGAACTCCGCAGGTAAGTGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * ** * **
1507 GCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTAGGAAAACTTTTTGTTGCA-CCC-C---
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* * **
1567 ----------ACTTTTTGTATTATTTTATTTATCGTAAATTTACAATTTTGCGAAATAGTAAAAT
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* * * * * *
1622 TTCATGGGATATATGGACGTTATTGGCAT-TATTTTATATTATTTTTATTCTCGAAAATACGTCT
261 TTCATGGGATATATGGACATTATTAGCGTAT-TTTTATTTTATTTTTATCCGCGAAAATACGTCT
* * * *
1686 TCCCGAGCCTTGTTTTGGTATTT
325 TCCCGAGCATTATTTGGGTATAT
* * *
1709 TTACATTCAAATTCGAGGCACGAATGGAATGAAAGATAACCTTTATGTAAATAGATTGCGCAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* ** * * * *
1774 CATATTTAGTGCAATCATACTAGCACTAATGCATCGGATCCCATCAAAACTCCGCAGTTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * *
1839 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTCCTCCTGTTGCACTCCTCATT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-TT
* **
1904 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGAAAATTTATAATTTTGCGAAATAGTAAAG
195 TTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAG
* * *
1969 CTTCATGGGATATATGGACATTAATAGGGTATTTATATTTTATTTTTATCCGCGAAAATACGTCT
260 CTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCT
*
2034 TCCCGAGCATTATTTTGGTATAT
325 TCCCGAGCATTATTTGGGTATAT
* * * * * * *
2057 TTATAATCAAATTCGAGGCACGAATAGGATGAAAGGTAATCTTTACGTAAATAGAATGCGCAGAG
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * *
2122 CATAATGGGTGTGATCATACCAGCACTAATGCACCGGATCCCATCAAAACTTCGCAGTGAAGCAT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* *
2187 GCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCCTGTTGCACCCCTCTTT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-TT
* * * *
2252 TTGTTTTTTTTTTCTTTTTGTATTATTTTATTTATCTTAAATTTACAATTTTGCAAAATAGAAAA
195 TTG-TTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAA
*** *
2317 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTT-TTTTTATCCATAAAAATTCGTC
259 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
2381 TTCCCGAGCATTATTTGGGTATAT
324 TTCCCGAGCATTATTTGGGTATAT
* ** *
2405 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATCGATTGCATAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * ** *
2470 CTTAATGGGTGTGATCGTACCAGCACTAATGCACTAGATCACATCAGAACTCCGCAGTTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
** * *
2535 GCTTGGGCGAGAGTAGTACTAGGATATGTGACCTCCTGGGAAGTCCTCGTGTTGAACCCATCTTT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-TT
* *
2600 TTGTTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTGGCGAAATAGTTA
195 TTG--TTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAA
2665 AGCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGT
258 AGCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGT
*
2730 CTTCCCGAGCATTACTTGGGTATAT
323 CTTCCCGAGCATTATTTGGGTATAT
** * ** *
2755 TTACATTCAAATTCGAGGCACGAATGGGATGGGAGGTAGCCACTATGTAAATAGATTGCGTAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * *
2820 CAAAATGGGTGCGATCATACCATCACTAATGCACCGGATCGCATCAGAACCCCGTAGTTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * * *
2885 ACTTAGGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTACACCCATC-TT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* * *
2949 T-TTTATTTTT-TTTTTGTATTATTTTATTTATCGTAAATTTCCAATTTTGAGAAATAGTAAAGC
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* * **
3012 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCACGAAAATACTTGAT
261 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTT
* *
3077 CCCGAGCATTTTTTGGATATAT
326 CCCGAGCATTATTTGGGTATAT
* * * *
3099 TTACATTCAAATTCGAGGCACGAATTGGATGGAACGTAACCTTTATATAAATAGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * * *
3164 CATAATGGGTGCGATCAGACCAACACTAAAGCACCCGATCCCATCAGAATTCCGCAGCTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * * * *
3229 GCTTTGGCGAGAGTGGTACTACGG-TGCGTAACGTCTTGGGAAGTCCTCGTGTTGCACCCCTCTT
131 GCTTGGGCGAGAGTAGTACTA-GGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTT
* *
3293 TT-TGTTTTTTTTCTTTTTGTATTATTTTATTTATCATAAATTTTCAATTTTGCGAAATAGTAAA
195 TTGT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAA
* *
3357 GCTTCATGGGATATATGGA-GTTA--AGCGTATTTTTATTTTATTTTTATCCGCGAAAATATGTC
259 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
* * *
3419 TTCTCGTGCATTTTTTGGGTATAT
324 TTCCCGAGCATTATTTGGGTATAT
* * * * * *
3443 TTACATTCAAATTCGAGGCACAAATTGAATGAAAGGTAACCTTTATATAAATAGATTGCACAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* ** * * * *
3508 CATAATTGGTGTAATCATACTAGCACTAATGCACCGGATTCCATCAAAACTCCGCAGTTAGGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * *
3573 GCTTGGGCGAGAGTAGTACCAGGATGGGTGACCTCCTTGGAAGTCCTCGTGCTGCACTCCTCATT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-TT
* * * *
3638 TTGTTTTTTGTTT-TTTTTGTATTATTTTATTTACCGAAAATTTACAATTTTACGAAATAGTAAA
195 TTGTTTTTT-TTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAA
* * *
3702 GCATCATGGGATATATGGACATTATTAGAGTA-TTTTATTTTATTTTTATCCACGAAAATACGTC
259 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
**
3766 TTCCCGAGCATTATTTGTATATAT
324 TTCCCGAGCATTATTTGGGTATAT
** * * * *
3790 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAATATTTACGTAAATAGAATGCGTAGAG
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * *
3855 CATAATGGGTGTGATCATACCGGCAGTAATGCACCGGATCCCATCA-ACACTCCGCAGTGAAGCG
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA-ACTCCGCAGTTAAGCG
* *
3919 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGTCCTCCTTGGAAGTCCCTC-TGTTGCACCCCTCT
130 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT-CCTCGTGTTGCACCCCTC-
* * * *
3983 TTTTGTTTTTTTTTCTTTATATATTATTTTATTTATCGTAAATTTCCAATTTTGAGAAATAGTAA
193 TTTTGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAA
*
4048 AGCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTT
258 AGCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGT
* *
4113 GTTCCCGAGCATT-TTTTGGTATAT
323 CTTCCCGAGCATTATTTGGGTATAT
* * *
4137 TTACATTCAAATTCGAGGCACGAATGGAATGAAATGTAACCTTTATATAAATAGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * *
4202 CATAGTGGGTGCGATCATACCAGTACTAATGCACCGGATCCCATCAGAACTCCGCTGCTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* *
4267 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACGTCCTGGGAAGTCCTCCTGTTGCACCCCTCTTT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
*
4332 T-TGTTTTTTTTCTTTTTGTATTATTTTATTTATTC-AAAATTTGCAATTTTGCGAAATAGTAAA
196 TGT-TTTTTTTTCTTTTTGTATTATTTTATTTA-TCGTAAATTTGCAATTTTGCGAAATAGTAAA
*
4395 GCTTCATGGGATATATGGACATCATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
259 GCTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTC
*
4460 TTCCCGAACATTATTTGGGTATAT
324 TTCCCGAGCATTATTTGGGTATAT
* * * * *
4484 TTACGTCCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTACGTAAATCGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * **** *
4549 CATAATGAGTGCGATCATACCAGCACTAACGCACCGGATCCCATCAGAACTCTATTGATAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * * * *
4614 TCTTGGGTGAGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGATACATCCCTC--T
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
*
4677 T-TTTTTTTTTCTTTTTATATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
*
4741 TTCATGGGATATATGGACATTATTAGCGT-TATTTTATTTTATTTTTATCCGCGAAAATACGACT
261 TTCATGGGATATATGGACATTATTAGCGTAT-TTTTATTTTATTTTTATCCGCGAAAATACGTCT
* *
4805 TCCCGAGCCTTTTTTGGGTATAT
325 TCCCGAGCATTATTTGGGTATAT
* * *
4828 TTACATTCAAATTCGAGGCACGAATCGAATGAAAGGTAACCTTTATGTAAATAGATTGCGCAAAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * * * ** *
4893 CATATTGGGTGCAATCATACTAGCACTAATGCATCGAATCCCATAAGAACTCCTTAGTTAAGTGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* ** * **
4958 GCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAAACTTTTTGTTGCA-CCC-C---
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* *
5018 ----------TCATTTTGTATTATTTTATTTATCGTAAATTTACAATTTTGCGAAATAGTAAAGC
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* *
5073 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTGTT
261 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTT
* * *
5138 ACCGAGCATTTTTTTGGTATAT
326 CCCGAGCATTATTTGGGTATAT
* * * *
5160 TTACATTCAAATTCGAGGCACGAATTGGATGAAACGTAACCTTTATATAAATAGATTGCGCATAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * * * *
5225 CACAATTGGTGCGATCAAACCAGCACTAATGCACCGGATCGCATCGGAACCCCGCAGTTAAGCAT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * *
5290 GCTTAGGCGAGAGTTGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCTCTCTTT
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* * * *
5355 T-TGTTTTTTTTCCTTTTGTATTATTTTATTTATCGAAAAATTGCAATTTTGAGAAATAGTAAAG
196 TGT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAG
* * * *
5419 CTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTATATCCGCGAAAAAACTTGT
260 CTTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCT
* *
5484 TCCTGAGCATT-TTTTGGTATAT
325 TCCCGAGCATTATTTGGGTATAT
* * * *
5506 TTACATTCAAATTCGAGTCACGAATGGAATGAAACGTAACCTTTATATAAATAGATTGCGCAGAA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * *
5571 CATAATGGGTGCGATCATACCAGTACTAATGCACCGTAT-CCATCAGAACTCCGCTGCTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* *
5635 GCTTGGGAGAGAGTAGTACTAGGATGGGTGACGTCCTGGGAAGTCCTCGTGTTGCA-CCC-C---
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* ** *
5695 AG------TTT-TTTTTGTATTATTTTATTTATCGTAAATTTGCGGTTTTGCGAAATAGTAAATC
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* * * * *
5753 TTCGTGGGATATTTGGATATTATTAGCATATTTTTATTTTATTTTTATCCTCGAAAATACGTCTT
261 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTT
* *
5818 CCCTAGCATTATTTGTGTATAT
326 CCCGAGCATTATTTGGGTATAT
* * * * *
5840 TTACATTAAAATTCGAGGCACGAATGGGATGAGACGTAGCCTTTATGTAAATAGATTGCGCAGAG
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
* * * * *
5905 CTTAGTGGGTGGGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGCAGCTAAGCGT
66 CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * *
5970 GCTTGGGAGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCTTCTTGTTGC-TCCC-C---
131 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
* * * *
6030 AG------TTT-TTTTTGAATTATTTTATTTATCGTAAATTTCCAGTTTTGCGAAATAGTAAAGC
196 TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* * *
6088 TTCATGGGATATATGGATATTATTAGCGTATTTTTATTTTATTTTTACCCTCGAAAATACGTCTT
261 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTT
* *
6153 CCCTAGCATTATTTAGGTATAT
326 CCCGAGCATTATTTGGGTATAT
* * *
6175 TTACATTAAAATTCGAGGCACGAATGGGATGAGACGTAGA-CTTTATGTAAATAGATTGCGCAGA
1 TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTA-ACCTTTATGTAAATAGATTGCGCAGA
6239 GCTTAGTGGG
Statistics
Matches: 5151, Mismatches: 662, Indels: 170
0.86 0.11 0.03
Matches are distributed among these distances:
331 197 0.04
332 370 0.07
333 115 0.02
334 105 0.02
335 277 0.05
337 2 0.00
338 75 0.01
339 210 0.04
342 1 0.00
343 9 0.00
344 802 0.16
345 491 0.10
346 397 0.08
347 963 0.19
348 733 0.14
349 196 0.04
350 208 0.04
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (347 bp):
TTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTATGTAAATAGATTGCGCAGAA
CATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGT
GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTT
TGTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTT
CCCGAGCATTATTTGGGTATAT
Found at i:2280 original size:17 final size:17
Alignment explanation
Indices: 2247--2280 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2237 GTTGCACCCC
* *
2247 TCTTTTTGTTTTTTTTT
1 TCTTTTTGTATTATTTT
2264 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
2281 ATTTATCTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.82
Consensus pattern (17 bp):
TCTTTTTGTATTATTTT
Found at i:2629 original size:18 final size:18
Alignment explanation
Indices: 2595--2629 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2585 GTTGAACCCA
* *
2595 TCTTTTTGTTTTTTTTTT
1 TCTTTTTGTATTATTTTT
2613 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
2630 ATTTATCGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.83
Consensus pattern (18 bp):
TCTTTTTGTATTATTTTT
Found at i:7368 original size:18 final size:18
Alignment explanation
Indices: 7334--7368 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7324 GTTGCACCCC
* *
7334 TCTTTTTGTTTTTTTTTT
1 TCTTTTTGTATTATTTTT
7352 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
7369 ATTTATCGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.83
Consensus pattern (18 bp):
TCTTTTTGTATTATTTTT
Found at i:7910 original size:345 final size:347
Alignment explanation
Indices: 6302--9648 Score: 4217
Period size: 345 Copynumber: 9.7 Consensus size: 347
6292 NNNNNNNNNN
** * * * *
6302 TTTTTTTTCTTTTTGTATTATTTTATTTATCGCGAATATACAATTTTGTGTAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * * * * * *
6367 ATGGAATATATGGACTTTATTAGCATATTTGTATTTTGTTTTTATCTGCGAAAATACGTCTTCCC
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
*
6432 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACTAATGGGATGAAAGGTAACCTTTAC
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * ** * * * *
6497 GTAAATAGAATGCGCAGAGGATAATGAGTGCCATCATACCAGCACTTATGCACCGGATCCCATCA
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCA
* * *
6562 GAACTCCGCAGTTAAGTGTGCTTGGGAGAAAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
261 GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
*
6627 TCGTGTTGCACCCTTCTTTTTG
326 TCGTGTTGCACCCCTCTTTTTG
*
6649 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTACAATTTTGCGAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * *
6714 ATGGGATATATGGACATTATTAGAGTATTTTTATTTTATTTTTATCTGTGAAAATACTTCTTCCC
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* * * *
6779 GAGCATTATTTGAGTATATTTACATTCAAATTCGAGGCACGAATGAGATGAAAGGTCATCTTTAC
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * * * *
6844 ATAAATAGAATGCGCAGAGCATAATGGGTGTGATCATCCCAGCGCTAATGCA-TCGGATCCCATC
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCATC
* * * * * *
6908 AAAACTTCGCAGTAAAGCTTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAAGTC
260 AGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTC
*
6973 CTCTTGTTGCACCCCTCTTTTTG
325 CTCGTGTTGCACCCCTCTTTTTG
*
6996 TTTTTTTTCCTTTTTGTATTATTTTATTTATCGTAAATTTACAATTTTGCGAAATAGTAAAGCTT
1 TTTTTTTT-CTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTT
* * * *
7061 CATGGGATATGTGGACATTATTAGAGTATTTTTA-TTT-TTTTTATCCGTGAAAATACTGCTTCC
65 CATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCC
* *
7124 CGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTCATCTTTA
130 CGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTA
* * * *
7189 CATAAATAGAATGCGCAGAGCATAATGGGTGTGATCATACCAGCACTAATGCA-TCGGATACCAT
195 CATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCAT
* * * * * * * *
7253 CAAAACTTCACACTGAAGCTTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGT
259 CAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
*
7318 CCTCCTGTTGCACCCCTCTTTTTG
324 CCTCGTGTTGCACCCCTCTTTTTG
*
7342 TTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTACGAAATAGTAAAGC
1 ---TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGC
* ** * *
7407 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATTCGTAAAAATTCGTCTT
63 TTCATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTT
* * * * *
7472 CCCGAACGTTGTTTGGGTATATTTACGTTCAAATTCGAGGCACGAATGGGATGAAATGTAACCTT
128 CCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTT
** * * * * *
7537 TATGTAAATAGATTGCACAAAACATAATGGGTGCGATCGTACCAACACTAATGCACTGGATCGCA
193 TACATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACTGGATCCCA
* *
7602 TCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATCGGTGACCTCCTGGGTAG
258 TCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
** *
7667 TCCTCGTGCAGCACCCCTCATTTTG
323 TCCTCGTGTTGCACCCCTCTTTTTG
* * * *
7692 -TTTTTTTCTTTTTGTATTATTTTATGTATCGAAAATTTACAATTTTGTGAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* ** **
7756 AT-GGATATATGGACATTATTAGAGTATTTTTATTTTATTTTTATCCATGAAAATACTTCTTGTC
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* *
7820 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTCATCTTTAC
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * * * *
7885 ATAAATAGAATGCGCAGATCATAATGGGCGTGATCATACCAGCACTAATGCA-TCAGATCCCATC
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCATC
* * * * * * *
7949 AAAACTCCGCAGTGAAGCGTGCTTGGGTGAGAGTAGTACTAGCATGGGTGACCTCCTAGTAACTC
260 AGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTC
*
8014 CTCTTGTTGCA-CCC-C------
325 CTCGTGTTGCACCCCTCTTTTTG
*
8029 -------TCTTTTTGTATTATTTTATTTATCGTAAATTTGTAATTTTGCGAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * *
8087 ATGGGATATATGAACATTTTTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCC
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* * * * * * * *
8152 GAGAATTATTTGGGTATCTTTACATTCAAATTTGAGGCACGAATGGGATGAGACGTAGCCTCTAT
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * * * * *
8217 GTAAATAGATTGCGTAGAACATATTGGGTGCGATCATACC-GTCACTAATGTACCGGATCNCATC
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAG-CACTAATGCACTGGATCCCATC
* * * * * * *
8281 AGAACCCCGTAGTTAAGTGTGCTTAGGCGAGAGCAGTATTAGGATGGGTGACCTTCTGGGAAGTC
260 AGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTC
* *
8346 CTCGTGTTACACCCATC--TTT-
325 CTCGTGTTGCACCCCTCTTTTTG
* * *
8366 TTATTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTTCAATTTTGAGAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * *
8431 ATGGGATATATGAACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTGTTCCT
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* * * * *
8496 GAGCATTTTTTGGGTATATTTACATTCAAATTCGAAGCACGAATTGGATGAAACGTAACCTTTAT
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * * **
8561 ATAAATAGACTGCGCAGAACATAATGGGTGCGATCAGACCAGCACTAATGC-GTCGGATCGAATC
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCATC
* * * * *
8625 GGAA-TCCTGCAGTTAACCGTGCTTAGGCGAGAGTTGTACTAGGATGGGTGACCTCCTAGGAAGT
260 AGAACTCC-GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* *
8689 CCTCGTGTTGCACCTCTTTTTTTTG
324 CCTCGTGTTGCACC-CCTCTTTTTG
* * *
8714 TTTTTTTTCGTTTTGTATTATTTTATTTATCGAAAATTTGCAATTTTGCAAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * * *
8779 ATGGGATATATGGACATTCTTAGCGTA-TTTT-TTTTATTTATATCCGCGAAAATACTTGTTCCT
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* * * * * * * * *
8842 GAGCATT-TTTTGGTATATTCACATTCAAATTCCAGGAACGAATGGAATGGAACGTTACCTTTAT
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * *
8906 ATAAATAGATTGCGCAGAACATAATGGGTGCAATCATACCAGTACTAATGCACCGGATCCCATCA
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCA
* * * *
8971 GAACTCCGCTGCTAAGCGTGCTTGGACGAGAGTAGTACTAGGATGGGTGACGTCCTGGGAAGTCC
261 GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
9036 TCGTGTTGCACCCCTCTTTTTG
326 TCGTGTTGCACCCCTCTTTTTG
* * **
9058 TTTTTTTTCTTTTTGTATTATTTTGTTTATCGAAAATTTGCAATTAAGCGAAATAGTAAAGCTTC
1 TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
* * * *
9123 ATGGG--ATATGGACATTATTAGCGTATTTTTATTTTATTTTTAACCGCGAAAACACGTCTTCCT
66 ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
* * *
9186 GAGCATTATTTGAGTATATTTACATCCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTAC
131 GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
* * * * * ***
9251 GTAAATAGATTGCACAGAACATAATGAGTGAGATCATACCAGCACTAATTCACCAAATCCCATCA
196 ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCA
* ** * * * * *
9316 GAACTCTGTTGATAAGCGTTCTTGGGTGAGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGTCC
261 GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
*
9381 TCGTGTTGCATCCCTCTTTTTG
326 TCGTGTTGCACCCCTCTTTTTG
* * * *
9403 TTTTTTTTTCTTTTTGTATTACTTTATTCACCGTAAATTTGCAATTTTACGAAATAGTAAAGCTT
1 -TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTT
* * *
9468 CATGGAATATATGGACATTATTAGCGT-TATTTTATTTTATTTTTATCCGTGAAAATA-TGACTT
65 CATGGGATATATGGACATTATTAGCGTAT-TTTTATTTTATTTTTATCCGCGAAAATACT-TCTT
* * * * * *
9531 CTCGAGCCTTTTTTTGGTATATTTACATTCAAATTCGAGGCACTAATGGAATGAAAGGTAACCTT
128 CCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTT
** * * * * *
9596 TATGTAAATAGATTGCACAAAACATATTGGGTGCAATCATACTAGCACTAATG
193 TACATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATG
9649 TTC
Statistics
Matches: 2622, Mismatches: 337, Indels: 81
0.86 0.11 0.03
Matches are distributed among these distances:
331 56 0.02
332 219 0.08
333 2 0.00
334 1 0.00
342 19 0.01
343 7 0.00
344 398 0.15
345 575 0.22
346 394 0.15
347 328 0.13
348 406 0.15
349 11 0.00
350 205 0.08
351 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (347 bp):
TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAATTTGCAATTTTGCGAAATAGTAAAGCTTC
ATGGGATATATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCGAAAATACTTCTTCCC
GAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAACCTTTAC
ATAAATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCA
GAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
TCGTGTTGCACCCCTCTTTTTG
Done.