Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013277.1 Kokia drynarioides strain JFW-HI SEQ_128298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9849
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:6485 original size:27 final size:27

Alignment explanation


    Indices: 6433--6488  Score: 71
    Period size: 26  Copynumber: 2.1  Consensus size: 27

       6423 CATTTTTTCC

                                 *     
       6433 TTATGTTCTTTTGAAGCATTTTTTTTT
          1 TTATGTTCTTTTGAAGCATTTCTTTTT

                                         
       6460 TTAT-TTCTTTTGAAGTC-TTTCCTTTTT
          1 TTATGTTCTTTTGAAG-CATTT-CTTTTT

              
       6487 TT
          1 TT

       6489 TAACATTTTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  26   14  0.54
  27   12  0.46

ACGTcount: A:0.12, C:0.11, G:0.09, T:0.68


Consensus pattern (27 bp):   
TTATGTTCTTTTGAAGCATTTCTTTTT

Found at i:8381 original size:27 final size:27

Alignment explanation


    Indices: 8329--8384  Score: 71
    Period size: 26  Copynumber: 2.1  Consensus size: 27

       8319 CATTTTTTCC

                                 *     
       8329 TTATGTTCTTTTGAAGCATTTTTTTTT
          1 TTATGTTCTTTTGAAGCATTTCTTTTT

                                         
       8356 TTAT-TTCTTTTGAAGTC-TTTCCTTTTT
          1 TTATGTTCTTTTGAAG-CATTT-CTTTTT

              
       8383 TT
          1 TT

       8385 TAACATTTTA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  26   14  0.54
  27   12  0.46

ACGTcount: A:0.12, C:0.11, G:0.09, T:0.68


Consensus pattern (27 bp):   
TTATGTTCTTTTGAAGCATTTCTTTTT
Done.