genome.fa.s13279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013279.1 Kokia drynarioides strain JFW-HI SEQ_128300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104545

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2640--2703	33	1.9	33	81	12	78	43	0	0	56	0.99
2755--2828	32	2.3	32	97	2	141	54	0	2	43	1.14
3414--3445	13	2.5	13	94	0	55	62	6	6	25	1.42
3902--3986	43	2.0	42	88	6	127	21	5	56	16	1.61
7249--7439	95	2.0	96	83	10	241	37	13	18	30	1.89
7669--7977	59	5.3	56	80	6	242	33	2	30	33	1.73
7764--8054	29	9.9	29	82	5	318	32	2	29	34	1.72
7669--8051	117	3.3	117	81	7	345	33	2	29	34	1.72
7764--8055	59	5.0	59	82	4	340	32	2	29	34	1.72
7669--8054	88	4.4	85	79	10	368	32	2	30	34	1.72
7764--8070	117	2.6	116	85	5	370	33	2	28	35	1.72
10130--10198	28	2.4	31	80	9	83	23	20	5	50	1.69
10426--10476	20	2.6	19	81	9	59	62	3	1	31	1.24
12419--12485	27	2.4	28	80	11	68	62	1	1	34	1.13
14815--15012	90	2.2	90	90	0	306	27	19	27	26	1.99
15944--15995	21	2.5	21	81	6	61	28	13	25	32	1.93
24287--24316	16	1.9	16	93	6	53	3	13	0	83	0.77
24283--24327	19	2.4	18	82	13	56	6	13	0	80	0.91
36442--36500	24	2.5	24	94	0	100	20	25	25	28	1.99
40560--40617	22	2.5	23	80	8	82	12	6	3	77	1.09
40570--40617	21	2.2	22	96	3	89	12	8	4	75	1.18
41937--42011	35	2.1	35	92	0	123	25	12	21	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46696--46730	18	1.9	18	88	11	54	40	11	11	37	1.77
50458--50492	3	11.7	3	100	0	70	65	0	34	0	0.93
51863--52054	96	2.0	96	82	6	237	39	13	17	29	1.88
52371--52721	29	11.9	29	74	14	233	32	5	29	33	1.79
52370--52696	59	5.5	57	76	13	265	32	4	29	33	1.79
52378--52717	88	3.9	86	80	10	300	32	5	29	33	1.79
52708--52737	9	3.3	9	100	0	60	30	0	26	43	1.55
53829--53861	3	11.0	3	100	0	66	33	0	0	66	0.92
54600--54646	24	1.9	25	86	4	69	23	4	6	65	1.33
54679--54814	6	22.8	6	65	15	68	55	2	3	38	1.33
54680--54793	31	3.3	37	81	17	147	57	1	4	36	1.29
54773--54819	22	2.1	23	84	4	60	55	6	0	38	1.26
57942--58022	33	2.5	33	81	0	99	24	8	9	56	1.60
60021--60047	3	9.0	3	100	0	54	33	0	0	66	0.92
72590--72632	8	5.7	7	83	8	50	65	2	0	32	1.06
97040--97074	14	2.7	13	91	8	54	28	0	0	71	0.86
103566--103700	40	3.4	38	73	12	96	30	28	20	21	1.98
103598--103701	37	2.7	38	76	5	93	31	26	19	22	1.97

Tables:   1

The End!