Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013290.1 Kokia drynarioides strain JFW-HI SEQ_128312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3425
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.34
Warning! 69 characters in sequence are not A, C, G, or T
Found at i:688 original size:20 final size:20
Alignment explanation
Indices: 663--704 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
653 TCTCTTCTTT
663 AATGGAAAAGGATTGAATGA
1 AATGGAAAAGGATTGAATGA
683 AATGGAAAAGGATTGAATGA
1 AATGGAAAAGGATTGAATGA
703 AA
1 AA
705 CAGTGACACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.29, T:0.19
Consensus pattern (20 bp):
AATGGAAAAGGATTGAATGA
Found at i:910 original size:241 final size:239
Alignment explanation
Indices: 201--3425 Score: 2476
Period size: 221 Copynumber: 14.2 Consensus size: 239
191 TCTCTTCTTT
* * *
201 AATGGAAAATGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT-CTATTGTTTTCA
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTT-A
* * *
265 CGCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTGAGAAAATCAAATTAAAATTA
65 CGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTA
* * *
330 AAATCCTGAAATTTAGGATGAAATTGTTGGTGTGGCATAAAACCATTGG-AAGGGGTAATATCCC
130 AAATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCC
* *
394 TATTTCATACAATCCTTTCTCTTCTTCAATGGAAAATGATTTAATA
195 TGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAA-GATTGAATA
* * * * * *
440 AACTGGAAGAGGATTGAATAAAACAGTGAAACCACGCCATTTGTGTCCCTTTTTCAATAATTTTA
1 AA-TGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTA
*
505 CGCTC-CATCAGTATTTTCATTCTTAATTTCAACATTTACATCCTGAAAAGAA-ACAAATTAAAA
65 CGC-CACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAA-AATA-AAATTAAAA
* * *
568 TTAAAATCCTGAAATTCAAGATGAAATTGCTGGTGTGGCATAAAACTATCGGAAAGGGATAATAT
127 TTAAAATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATAT
** *
633 CCCTACTTCATACCAA-CCTTTCTCTTCTTTAATGGAAAAGGATTGAATGA
192 CCCTGTTTCATA-CAATCCTTTCTCTTCTTCAATGGAAAA-GATTGAAT-A
* *
683 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCATTAGTTTTAT
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *
748 GCCACATCAGCATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAAATAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* ** * * *
813 AGTCCTGAAATTCAAAATGAAATTGTTGATGTGGCATAAAACAATTGGAAAGGGATAACATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
878 GTTTCATACAATCCTTTCTCTTCTTCAAT------G---G-A-A
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
*
911 AAT-------GATTGAATGAAACAGTGACACAACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * * *
969 GCCACATCAGTATTTTCATTCTGAATTTCAACATTTTCATCCTGAGAAAATCAAATTAAAATCAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* *
1034 AATCCTGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGGTAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1099 GTTTTATACAATCCTTTCTCTTCTTC------------------
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* * * *
1125 AATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTGTGTCCCTTTTCTAATAGTTCTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
1190 GCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGGAAAAATCAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* *
1255 AATCCTGAAATTCAGGATGAAATTGTTGATGTGTCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1320 GTTTCTTACAATCCTTTCTCTTCTTCAAT-------A--G-A-A
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* * * *
1353 AAT-------GATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCTATTGGTTTGAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *********
1411 GCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTNNNNNNNNNAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* *
1476 AATCCTGAAATTTAGGATGAAATTGTTGGTGTGGCATAAAACCATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1541 GTTTCATACAATCCTTTCCCTTCTTCAATGGAAAATGATTGAATAA
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAA-GATTGAAT-A
* * * *
1587 AATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGCCCCTTTTCCAATAATTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
1652 GCCACATTAATATTTTAATTCTTAATTTCAACATTTTCATCCTGAAAAAA-ACAAATTAAAATTA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATA-AAATTAAAATTA
* * * **
1716 AAATCCTGAAATTCCGGATGAAATTTTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCTT
130 AAATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCC
* *
1781 TGTGTCATACGATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
195 TGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAA-GATTGAAT--A
* * * * *** ** ** ** ** * *
1829 ACAGTGGCACCACGTCATTG-GTGTTTCTTTTCCAATA-GT--TTTACG-CCAC--AT-CAGTA-
1 A-A-TGG-A-AAAG-GATTGAATGAAACAGTGACACCACGTCATTTGTGTCC-CTTTTCCAATAG
* * ** * * *** ** *
1885 TTTT----CA-TTC-TTAATTTTAACATT-TTCCTCCTGAA-AAAATCA-AAT--TAAAATCAAA
60 TTTTACGCCACATCAGT-ATTTT--CATTCTTAAT-TTCAACATTTTCATCCTGAAAAAAT-AAA
* ** * * * **** ** *
1939 ATCCTGAAATTCAGGA---TGAAATT---GTTG--A-TGTGGCATAAAACTATTGGAA--A-GGG
120 AT--TAAAATT-AAAATCCTGAAATTCAGGATGAAATTGTTG-GTGTGGC-A-TAAAACTATTGG
* *
1992 ATAA-T------ATCCCTGTTTTATACAATCCTTTCTCTTCTTC------------------
179 A-AAGGGATAATATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* * * *
2029 AATGGAAAAGGATTGAATGAAATAGTGACACCTCGTCATTTGTTTCCCTTTTCAAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * * * * * * *
2094 ACCATATCAGTATTTTCATTCTTAATTTCTACGTTTTCATACTGAGAAAATCAAATAAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* *
2159 AATCCAGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
* **********
2224 GTTTTATACAATCNNNNNNNNNNTTC------------------
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* *
2250 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTACCTTTTCCATTAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
*
2315 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCTTGAAAAAATAAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* * * * * * *
2380 AATCTTGAAATTTAGGAAGAAATGGTTGATGTGGCATAAAACTAATGGAAAGGGATAATATCCCA
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
2445 GTTTCATAGAATCCTTTCTCTTCTTCAATGGAAAAG---G-AT-
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
**************************************************
2484 --T-GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
*
2546 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* * *
2611 AATCCTGAAATTCAGGAAGAAATGGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
2676 GTTTTATACAATCCTTTCTCTTCTTC------------------
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
*
2702 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCTAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * * *
2767 ACAATATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
* * *
2832 AATCTTGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATGGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
* *
2897 GTTTTATACAATCC-TTC-C-TCTTC------------T---TC
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* * * *
2923 AATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTATGTCCCTTTTCTAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
2988 GCCACATCAGTATTTTCTTTCTTAATTTCATCATTTTCATCCTGAAAAAATCAAATTAAAATT-A
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
*
3052 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
3117 GTTTCATACAATCTTTTCTCTTCTTCAAT------G---G-A-A
196 GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
* * * *
3150 AAT-------GATTGAATGAAATAGTGACACCACGTCATTTGTGTCCCTTTTCTATTGGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *
3208 GCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTGAGAAAAA-CAAATTAAAATTA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGA-AAAAATAAAATTAAAATTA
* * *
3272 AAATCCTGAAATTTAGGATGAAATTGTTGGTGTGGAATAAAACCATTGGAAAGGG-TAATATCCC
130 AAATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCC
* *
3336 TATTTCATACAATCCTTGCTCTTCTTCAATGGAAAATGATTGAATAA
195 TGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAA-GATTGAAT-A
* *
3383 AATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGT
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGT
Statistics
Matches: 2401, Mismatches: 430, Indels: 309
0.76 0.14 0.10
Matches are distributed among these distances:
195 4 0.00
196 7 0.00
197 3 0.00
198 3 0.00
199 5 0.00
200 3 0.00
201 1 0.00
202 3 0.00
203 4 0.00
206 8 0.00
207 13 0.01
208 9 0.00
209 10 0.00
210 5 0.00
212 6 0.00
213 1 0.00
214 9 0.00
215 7 0.00
218 5 0.00
219 1 0.00
220 217 0.09
221 1139 0.47
222 1 0.00
223 5 0.00
227 10 0.00
228 14 0.01
229 2 0.00
230 8 0.00
231 162 0.07
232 6 0.00
233 16 0.01
234 13 0.01
235 15 0.01
236 8 0.00
239 6 0.00
240 127 0.05
241 359 0.15
242 156 0.06
243 12 0.00
244 3 0.00
245 3 0.00
246 8 0.00
247 4 0.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.34
Consensus pattern (239 bp):
AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAATTAAAATTAA
AATCCTGAAATTCAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
GTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGATTGAATA
Found at i:1069 original size:221 final size:221
Alignment explanation
Indices: 683--3380 Score: 3503
Period size: 221 Copynumber: 12.1 Consensus size: 221
673 GATTGAATGA
* *
683 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCATTAGTTTTAT
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
748 GCCACATCAGCATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATAAAAATAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* ** * *
813 AGTCCTGAAATTCAAAATGAAATTGTTGATGTGGCATAAAACAATTGGAAAGGGATAACATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
878 GTTTCATACAATCCTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* *
904 AATGGAAAATGATTGAATGAAACAGTGACACAACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
969 GCCACATCAGTATTTTCATTCTGAATTTCAACATTTTCATCCTGAGAAAATCAAATTAAAATCAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* * *
1034 AATCCTGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGGTAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1099 GTTTTATACAATCCTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* * * *
1125 AATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTGTGTCCCTTTTCTAATAGTTCTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *
1190 GCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGGAAAAATCAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
*
1255 AATCCTGAAATTCAGGATGAAATTGTTGATGTGTCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1320 GTTTCTTACAATCCTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* * * * * *
1346 AATAGAAAATGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCTATTGGTTTGAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *********
1411 GCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTNNNNNNNNNAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* * *
1476 AATCCTGAAATTTAGGATGAAATTGTTGGTGTGGCATAAAACCATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
1541 GTTTCATACAATCCTTTCCCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* *
1567 AATGGAAAATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGC
1 AATGGAAAA-G---G-AT----T-G---A--A-TG----AAACAGTGACACCACGTCATTTGTGT
* * * *
1632 CCCTTTTCCAATAATTTTACGCCACATTAATATTTTAATTCTTAATTTCAACATTTTCATCCTGA
46 CCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGA
* * *
1697 AAAAAACAAATTAAAATTAAAATCCTGAAATTCCGGATGAAATTTTTGATGTGGCATAAAACTAT
111 AAAAATCAAATTAAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTAT
** * *
1762 TGGAAAGGGATAATATCTTTGTGTCATACGATCCTTTCTCTTCTTC
176 TGGAAAGGGATAATATCCCTGTTTCATACAATCCTTTCTCTTCTTC
* * **
1808 AATGGAAAAGGATTGAATGAAACAGTGGCACCACGTCATTGGTGTTTCTTTTCCAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
1873 GCCACATCAGTATTTTCATTCTTAATTTTAACATTTTCCTCCTGAAAAAATCAAATTAAAATCAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
1938 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
2003 GTTTTATACAATCCTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* * * *
2029 AATGGAAAAGGATTGAATGAAATAGTGACACCTCGTCATTTGTTTCCCTTTTCAAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * * * * * *
2094 ACCATATCAGTATTTTCATTCTTAATTTCTACGTTTTCATACTGAGAAAATCAAATAAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* * *
2159 AATCCAGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
* **********
2224 GTTTTATACAATCNNNNNNNNNNTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* *
2250 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTACCTTTTCCATTAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *
2315 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCTTGAAAAAATAAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* * * * * *
2380 AATCTTGAAATTTAGGAAGAAATGGTTGATGTGGCATAAAACTAATGGAAAGGGATAATATCCCA
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
2445 GTTTCATAGAATCCTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
**************************************
2471 AATGGAAAAGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AATGGAAAAGGATTGAA----------TGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCA
**
2536 NNAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAA
56 ATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAA
* *
2601 TTAAAATTAAAATCCTGAAATTCAGGAAGAAATGGTTGATGTGGCATAAAACTATTGGAAAGGGA
121 TTAAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGA
*
2666 TAATATCCCTGTTTTATACAATCCTTTCTCTTCTTC
186 TAATATCCCTGTTTCATACAATCCTTTCTCTTCTTC
*
2702 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCTAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* * *
2767 ACAATATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
* * * *
2832 AATCTTGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATGGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
* *
2897 GTTTTATACAATCCTTCCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* * * *
2923 AATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTATGTCCCTTTTCTAATAGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
* *
2988 GCCACATCAGTATTTTCTTTCTTAATTTCATCATTTTCATCCTGAAAAAATCAAATTAAAATT-A
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
3052 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
131 AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
*
3117 GTTTCATACAATCTTTTCTCTTCTTC
196 GTTTCATACAATCCTTTCTCTTCTTC
* * * * *
3143 AATGGAAAATGATTGAATGAAATAGTGACACCACGTCATTTGTGTCCCTTTTCTATTGGTTTTAC
1 AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
*
3208 GCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTGAGAAAAA-CAAATTAAAATTA
66 GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGA-AAAAATCAAATTAAAATTA
* * * *
3272 AAATCCTGAAATTTAGGATGAAATTGTTGGTGTGGAATAAAACCATTGGAAAGGG-TAATATCCC
130 AAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCC
* *
3336 TATTTCATACAATCCTTGCTCTTCTTC
195 TGTTTCATACAATCCTTTCTCTTCTTC
*
3363 AATGGAAAATGATTGAAT
1 AATGGAAAAGGATTGAAT
3381 AAAATGGAAA
Statistics
Matches: 2135, Mismatches: 310, Indels: 65
0.85 0.12 0.03
Matches are distributed among these distances:
220 248 0.12
221 1514 0.71
225 3 0.00
226 3 0.00
228 1 0.00
230 1 0.00
231 175 0.08
232 1 0.00
234 1 0.00
236 3 0.00
237 3 0.00
240 1 0.00
241 181 0.08
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.34
Consensus pattern (221 bp):
AATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTAC
GCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAA
AATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCT
GTTTCATACAATCCTTTCTCTTCTTC
Found at i:1592 original size:20 final size:20
Alignment explanation
Indices: 1567--1608 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
1557 TCCCTTCTTC
*
1567 AATGGAAAATGATTGAATAA
1 AATGGAAAAGGATTGAATAA
1587 AATGGAAAAGGATTGAATAA
1 AATGGAAAAGGATTGAATAA
1607 AA
1 AA
1609 CAGTGACACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGGAAAAGGATTGAATAA
Found at i:1805 original size:904 final size:904
Alignment explanation
Indices: 1--3425 Score: 4585
Period size: 904 Copynumber: 3.8 Consensus size: 904
* * *
1 ACAGTGACACCATGTCAATTGTGTCCCTTTATCCATTAGTTTTACGCCACATCAGTATTTTCATT
1 ACAGTGACACCACGTCATTTGTGTCCCTTT-TCCAATAGTTTTACGCCACATCAGTATTTTCATT
* * * * ** **
66 CTTAATTTCAACATTTTCAAT-CTGAAAAATTAAAATTAAAATTAAAATCTTGAAATTGAAAATG
65 CTTAATTTCAACATTTTC-ATCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATG
130 -AATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCT
129 AAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCT
* * * *
194 CTTCTTTAATGGAAAATGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCT-ATT
194 CTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTGTCCCTTTTCTAATA
* *
258 GTTTTCACGCCACATCAGTATTTTCATTCTTAATGTCAACATTTTCATCCTGAGAAAATCAAATT
259 GTTTT-ACGCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGAGAAAATCAAATT
* * * *
323 AAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTGGCATAAAACCATTGG-AAGGGGTA
323 AAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATA
*
387 ATATCCCTATTTCATACAATCCTTTCTCTTCTTCAATGGAAAATGATTTAATAAACTGGAAGAGG
388 ATATCCCTGTTTCATACAATCCTTTCTCTTCTTCAAT-----A-G-----A-AAA-T-------G
* * * * *
452 ATTGAATAAAACAGTGAAACCACGCCATTTGTGTCCCTTTT-TCAATAATTTTACGCTC-CATCA
433 ATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTTCT-ATTAGTTTTACGC-CACATCA
* *
515 GTATTTTCATTCTTAATTTCAACATTTACATCCTGAAAAGAAACAAATTAAAATTAAAATCCTGA
496 GTATTTTCATTCTTAATGTCAACATTTTCATCCTGAAAA-AAACAAATTAAAATTAAAATCCTGA
* * * * * *
580 AATTCAAGATGAAATTGCTGGTGTGGCATAAAACTATCGGAAAGGGATAATATCCCTACTTCATA
560 AATTTAGGATGAAATTGTTGGTGTGGCATAAAACCATTGGAAAGGGATAATATCCCTATTTCATA
* * * *
645 CCAA-CCTTTCTCTTCTTTAATGGAAAAGGATTGAATGAAATGGAAAAGGATTGAATGAAACAGT
625 -CAATCCTTTCTCTTCTTCAATGGAAAATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGT
* * * * *
709 GACACCACGTCATTTGTGTCCCTTTTCCATTAGTTTTATGCCACATCAGCATTTTCATTCTTAAT
689 GACACCACGTTATTTGTGCCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAAT
* * **
774 TTCAACATTTTCATCCTGAAAAAATA-AAAATAAAATTAAAGTCCTGAAATTCAAAATGAAATTG
754 TTCAACATTTTCATCCTGAAAAAA-ACAAATTAAAATTAAAATCCTGAAATTCAGGATGAAATTG
* *
838 TTGATGTGGCATAAAACAATTGGAAAGGGATAACATCCCTGTTTCATACAATCCTTTCTCTTCTT
818 TTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATCCTTTCTCTTCTT
*
903 CAATGGAAAATGATTGAATGAA
883 CAATGGAAAAGGATTGAATGAA
*
925 ACAGTGACACAACGTCATTTGTGTCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
1 ACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
* *
990 TGAATTTCAACATTTTCATCCTGAGAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATGAA
66 TTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATGAA
* *
1055 ATTGTTGGTGTGGCATAAAACTATTGGAAAGGGGTAATATCCCTGTTTTATACAATCCTTTCTCT
131 ATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCTCT
*
1120 TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTGTGTCCCTTTTCTAATAGT
196 TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTGTCCCTTTTCTAATAGT
*
1185 TCTACGCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTG-GAAAAATCAAATTAA
261 TTTACGCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGAG-AAAATCAAATTAA
*
1249 AATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGTCATAAAACTATTGGAAAGGGATAAT
325 AATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAAT
*
1314 ATCCCTGTTTCTTACAATCCTTTCTCTTCTTCAATAGAAAATGATTGAATGAAACAGTGACACCA
390 ATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATAGAAAATGATTGAATGAAACAGTGACACCA
* *
1379 CGTCATTTGTGTCCCTTTTCTATTGGTTTGACGCCACATCAGTATTTTCATTCTTAATGTCAACA
455 CGTCATTTGTGTCCCTTTTCTATTAGTTTTACGCCACATCAGTATTTTCATTCTTAATGTCAACA
*********
1444 TTTTCATCCTNNNNNNNNNAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTG
520 TTTTCATCCTGAAAAAAACAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTG
* *
1509 GCATAAAACCATTGGAAAGGGATAATATCCCTGTTTCATACAATCCTTTCCCTTCTTCAATGGAA
585 GCATAAAACCATTGGAAAGGGATAATATCCCTATTTCATACAATCCTTTCTCTTCTTCAATGGAA
1574 AATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGCCCCTTTT
650 AATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGCCCCTTTT
* * * *
1639 CCAATAATTTTACGCCACATTAATATTTTAATTCTTAATTTCAACATTTTCATCCTGAAAAAAAC
715 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAAAC
* *
1704 AAATTAAAATTAAAATCCTGAAATTCCGGATGAAATTTTTGATGTGGCATAAAACTATTGGAAAG
780 AAATTAAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAG
** * *
1769 GGATAATATCTTTGTGTCATACGATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
845 GGATAATATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
* * **
1829 ACAGTGGCACCACGTCATTGGTGTTTCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
1 ACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
* * *
1894 TTAATTTTAACATTTTCCTCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATTCAGGATGAA
66 TTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATGAA
1959 ATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCTCT
131 ATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCTCT
* * * * *
2024 TCTTCAATGGAAAAGGATTGAATGAAATAGTGACACCTCGTCATTTGTTTCCCTTTTCAAATAGT
196 TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTGTCCCTTTTCTAATAGT
* * * * *
2089 TTTACACCATATCAGTATTTTCATTCTTAATTTC-TACGTTTTCATACTGAGAAAATCAAATAAA
261 TTTACGCCACATCAGTATTTTCATTCTTAATTTCAT-CATTTTCATCCTGAGAAAATCAAATTAA
* * *
2153 AATTAAAATCCAGAAATACAGGATGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAAT
325 AATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAAT
* ********** * *
2218 ATCCCTGTTTTATACAATCNNNNNNNNNNTTCAATGGAAAAGGATTGAATGAAACAGTGACACCA
390 ATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATAGAAAATGATTGAATGAAACAGTGACACCA
* * *
2283 CGTCATTTGTGTACCTTTTCCATTAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACA
455 CGTCATTTGTGTCCCTTTTCTATTAGTTTTACGCCACATCAGTATTTTCATTCTTAATGTCAACA
* * * * *
2348 TTTTCATCTTGAAAAAATA-AAATTAAAATTAAAATCTTGAAATTTAGGAAGAAATGGTTGATGT
520 TTTTCATCCTGAAAAAA-ACAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGT
* * *
2412 GGCATAAAACTAATGGAAAGGGATAATATCCC-AGTTTCATAGAATCCTTTCTCTTCTTCAATGG
584 GGCATAAAACCATTGGAAAGGGATAATATCCCTA-TTTCATACAATCCTTTCTCTTCTTCAATGG
*******************************************
2476 AAAA-G---G-AT----T-GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
648 AAAATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGCCCCTT
*******
2531 NNNNNNNAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAA
713 TTCCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAA
* * *
2596 TCAAATTAAAATTAAAATCCTGAAATTCAGGAAGAAATGGTTGATGTGGCATAAAACTATTGGAA
778 ACAAATTAAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAA
*
2661 AGGGATAATATCCCTGTTTTATACAATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
843 AGGGATAATATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
* * * *
2723 ACAGTGACACCACGTCATTTGTGTCCCTTTTCTAATAGTTTTACACAATATCAGTATTTTCATTC
1 ACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
* *
2788 TTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATTAAAATCTTGAAATACAGGATGAA
66 TTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATGAA
* * *
2853 ATTGTTGGTGTGGCATAAAACTATGGGAAAGGGATAATATCCCTGTTTTATACAATCCTTCCTCT
131 ATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCTCT
* *
2918 TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACGACGTCATCTATGTCCCTTTTCTAATAGT
196 TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTGTCCCTTTTCTAATAGT
* *
2983 TTTACGCCACATCAGTATTTTCTTTCTTAATTTCATCATTTTCATCCTGAAAAAATCAAATTAAA
261 TTTACGCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGAGAAAATCAAATTAAA
3048 ATT-AAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATA
326 ATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATA
* * *
3112 TCCCTGTTTCATACAATCTTTTCTCTTCTTCAATGGAAAATGATTGAATGAAATAGTGACACCAC
391 TCCCTGTTTCATACAATCCTTTCTCTTCTTCAATAGAAAATGATTGAATGAAACAGTGACACCAC
*
3177 GTCATTTGTGTCCCTTTTCTATTGGTTTTACGCCACATCAGTATTTTCATTCTTAATGTCAACAT
456 GTCATTTGTGTCCCTTTTCTATTAGTTTTACGCCACATCAGTATTTTCATTCTTAATGTCAACAT
*
3242 TTTCATCCTGAGAAAAACAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTGG
521 TTTCATCCTGAAAAAAACAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTGG
* *
3307 AATAAAACCATTGGAAAGGG-TAATATCCCTATTTCATACAATCCTTGCTCTTCTTCAATGGAAA
586 CATAAAACCATTGGAAAGGGATAATATCCCTATTTCATACAATCCTTTCTCTTCTTCAATGGAAA
3371 ATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGT
651 ATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGT
Statistics
Matches: 2166, Mismatches: 309, Indels: 74
0.85 0.12 0.03
Matches are distributed among these distances:
892 42 0.02
893 247 0.11
894 470 0.22
895 2 0.00
896 1 0.00
897 2 0.00
899 2 0.00
900 1 0.00
901 1 0.00
902 3 0.00
903 6 0.00
904 907 0.42
905 86 0.04
906 1 0.00
912 1 0.00
913 3 0.00
914 1 0.00
919 1 0.00
920 1 0.00
922 2 0.00
923 85 0.04
924 253 0.12
925 48 0.02
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.34
Consensus pattern (904 bp):
ACAGTGACACCACGTCATTTGTGTCCCTTTTCCAATAGTTTTACGCCACATCAGTATTTTCATTC
TTAATTTCAACATTTTCATCCTGAAAAAATCAAATTAAAATCAAAATCCTGAAATACAGGATGAA
ATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTTATACAATCCTTTCTCT
TCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTGTCCCTTTTCTAATAGT
TTTACGCCACATCAGTATTTTCATTCTTAATTTCATCATTTTCATCCTGAGAAAATCAAATTAAA
ATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATA
TCCCTGTTTCATACAATCCTTTCTCTTCTTCAATAGAAAATGATTGAATGAAACAGTGACACCAC
GTCATTTGTGTCCCTTTTCTATTAGTTTTACGCCACATCAGTATTTTCATTCTTAATGTCAACAT
TTTCATCCTGAAAAAAACAAATTAAAATTAAAATCCTGAAATTTAGGATGAAATTGTTGGTGTGG
CATAAAACCATTGGAAAGGGATAATATCCCTATTTCATACAATCCTTTCTCTTCTTCAATGGAAA
ATGATTGAATAAAATGGAAAAGGATTGAATAAAACAGTGACACCACGTTATTTGTGCCCCTTTTC
CAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAAACA
AATTAAAATTAAAATCCTGAAATTCAGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGG
GATAATATCCCTGTTTCATACAATCCTTTCTCTTCTTCAATGGAAAAGGATTGAATGAA
Found at i:3388 original size:20 final size:20
Alignment explanation
Indices: 3363--3404 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
3353 GCTCTTCTTC
*
3363 AATGGAAAATGATTGAATAA
1 AATGGAAAAGGATTGAATAA
3383 AATGGAAAAGGATTGAATAA
1 AATGGAAAAGGATTGAATAA
3403 AA
1 AA
3405 CAGTGACACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGGAAAAGGATTGAATAA
Done.