genome.fa.s13294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013294.1 Kokia drynarioides strain JFW-HI SEQ_128316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  314966

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727--808	6	14.3	6	70	19	59	52	1	1	45	1.16
730--808	17	4.6	17	84	4	106	53	1	1	44	1.16
730--812	33	2.4	34	86	6	105	51	2	1	44	1.22
8750--8816	35	1.9	35	100	0	134	46	7	0	46	1.31
11243--11303	30	2.0	31	81	6	72	29	3	21	45	1.67
12166--12233	26	2.6	27	73	4	75	25	32	20	22	1.98
32376--32467	24	3.8	24	80	5	105	26	21	25	27	2.00
40698--40943	43	5.8	43	82	4	252	38	12	24	23	1.90
40953--41054	41	2.5	42	80	7	102	38	5	26	29	1.80
46047--46104	20	2.8	21	73	5	55	25	17	22	34	1.96
49555--49585	16	1.9	16	93	0	53	64	0	22	12	1.27
50307--50461	82	1.9	84	84	2	215	37	13	25	23	1.91
50300--50463	41	3.9	41	78	2	175	37	12	25	25	1.91
52781--52814	6	5.7	6	96	0	50	50	8	0	41	1.34
52766--52814	12	4.1	12	82	15	57	46	10	2	40	1.49
56963--57055	20	5.0	19	69	17	70	44	0	2	53	1.12
56923--57071	54	2.6	56	83	10	180	44	0	2	52	1.20
58307--58380	27	2.7	27	78	0	85	24	28	28	18	1.98
63876--63913	20	2.0	20	89	5	60	76	2	2	18	1.02
67794--67853	29	2.1	28	82	14	70	50	8	5	36	1.55
68682--68725	12	3.7	12	78	0	52	31	4	6	56	1.46
84436--84802	116	3.2	116	93	0	617	35	19	23	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84748--85689	208	4.6	208	89	1	1256	36	19	22	21	1.95
85442--85513	37	1.9	37	94	0	126	33	20	25	20	1.97
86088--86167	25	2.9	29	82	12	89	41	0	3	55	1.18
86116--86163	12	4.0	12	86	7	71	43	0	0	56	0.99
86128--86169	13	3.3	13	86	6	68	47	0	0	52	1.00
86120--86169	25	2.0	25	100	0	100	48	0	0	52	1.00
86135--86184	18	2.8	17	85	11	64	44	0	4	52	1.20
87948--88141	30	6.6	29	74	13	85	36	25	3	35	1.74
88057--88320	57	4.6	58	80	11	262	35	30	3	31	1.73
87948--88327	29	13.1	29	74	12	232	35	28	3	32	1.75
88050--88386	29	11.7	27	70	13	151	34	29	4	31	1.77
89247--89283	18	2.1	18	94	0	65	21	21	32	24	1.98
90449--90503	29	2.0	27	85	7	74	43	5	18	32	1.73
94102--94260	58	2.7	59	89	1	221	54	9	6	29	1.59
96104--96142	19	2.1	19	95	0	69	23	7	0	69	1.14
96249--96457	9	22.6	9	68	25	82	23	2	17	55	1.55
96264--96364	21	4.7	21	75	12	82	20	4	16	57	1.58
96326--96531	55	3.7	53	77	12	193	24	1	15	58	1.48
96376--96489	30	3.6	30	76	13	86	25	1	15	57	1.49
96411--96501	42	2.1	44	80	8	98	27	3	13	56	1.53
96497--96537	21	2.0	21	95	0	73	17	0	17	65	1.27
96497--96543	16	2.9	17	76	17	55	17	0	17	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96960--97000	18	2.3	18	84	12	50	53	2	17	26	1.56
99440--99478	18	2.2	18	95	0	69	23	53	5	17	1.63
99831--99893	23	2.7	23	90	2	90	33	4	17	44	1.70
102369--102413	23	2.0	23	83	12	58	55	2	15	26	1.52
116089--116120	15	2.1	15	100	0	64	31	0	31	37	1.58
122772--122821	25	2.0	25	100	0	100	16	20	20	44	1.87
126705--126729	5	5.0	5	100	0	50	60	0	0	40	0.97
131876--131944	36	1.9	36	90	0	111	23	13	26	37	1.91
135536--135715	80	2.2	80	94	0	306	36	26	18	18	1.94
143988--144040	21	2.5	21	87	6	72	54	0	35	9	1.33
145697--145800	37	2.8	38	75	4	104	32	23	13	30	1.93
145777--145837	26	2.3	26	88	0	86	27	22	22	26	1.99
149018--149052	18	1.9	18	88	0	52	22	14	14	48	1.79
150529--150719	92	2.1	92	89	0	292	27	11	24	36	1.90
152368--152407	21	1.9	21	85	10	55	45	5	10	40	1.60
155023--155081	27	2.2	26	81	3	64	27	20	23	28	1.99
155786--155837	21	2.5	21	93	0	86	26	13	26	32	1.94
155894--155945	21	2.5	21	80	0	59	40	26	11	21	1.87
157633--157657	13	1.9	13	100	0	50	76	0	24	0	0.80
158674--158714	21	2.0	21	85	9	57	51	0	7	41	1.30
159400--159551	28	5.5	27	79	4	128	23	17	25	33	1.96
159394--159571	83	2.1	83	83	9	220	21	16	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159399--159597	111	1.8	111	79	7	235	22	17	25	35	1.95
183797--183846	14	3.4	14	76	17	57	14	8	10	68	1.40
188776--189179	93	4.4	90	73	8	280	26	24	15	32	1.95
188849--189495	180	3.5	178	76	7	634	26	23	16	33	1.96
188687--189181	273	1.8	272	82	3	638	26	24	15	32	1.95
188871--189497	185	3.4	185	74	9	512	26	23	16	33	1.96
190575--190649	36	2.0	37	92	5	125	32	20	12	36	1.89
194016--194067	26	2.0	24	82	10	59	38	0	19	42	1.51
194012--194074	27	2.4	27	77	17	69	41	0	20	38	1.53
209379--209451	29	2.4	30	84	4	94	28	15	19	36	1.92
209379--209461	29	2.8	29	81	3	76	30	14	18	37	1.90
215520--215565	21	2.2	21	84	7	58	28	8	21	41	1.83
215940--216026	43	2.0	43	93	0	147	34	13	20	31	1.92
233939--233990	12	4.2	12	73	9	50	63	0	34	1	1.06
239832--239871	17	2.4	17	95	0	71	10	20	17	52	1.72
239940--239979	17	2.4	17	91	0	62	12	20	15	52	1.74
239791--240006	108	2.0	108	98	0	414	31	14	16	37	1.89
240396--240526	31	4.3	30	72	16	94	27	10	9	52	1.66
240396--240586	90	2.1	92	79	7	203	27	11	10	50	1.71
243741--243765	10	2.5	10	100	0	50	52	0	12	36	1.39
247495--247546	26	2.0	26	100	0	104	34	3	34	26	1.75
251123--251172	25	2.0	25	96	0	91	26	8	10	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254410--254461	20	2.7	20	74	14	54	19	5	3	71	1.22
254445--254476	14	2.3	14	94	0	55	21	9	0	68	1.17
256993--257034	19	2.2	19	91	0	66	69	0	0	30	0.89
256996--257034	11	3.4	12	86	6	55	66	0	0	33	0.92
257740--257808	34	2.0	34	97	0	129	34	8	10	46	1.69
269540--269587	21	2.5	19	83	12	62	27	6	12	54	1.61
275682--275740	21	3.1	19	72	15	50	0	30	1	67	1.00
284388--284412	13	1.9	13	100	0	50	48	12	16	24	1.79
286263--286305	22	2.0	22	90	9	70	25	25	27	20	1.99
297287--297320	17	2.1	17	88	5	52	26	23	26	23	2.00
299108--299461	124	2.9	123	88	1	548	40	9	7	42	1.65
304860--304925	34	1.9	34	84	6	89	19	16	13	50	1.78
305484--305525	17	2.4	17	84	8	57	76	0	16	7	1.00
313698--313735	16	2.5	15	84	12	51	81	0	18	0	0.69

Tables:   1

The End!