Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013296.1 Kokia drynarioides strain JFW-HI SEQ_128318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2620
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1070 original size:11 final size:13

Alignment explanation


    Indices: 1045--1079  Score: 56
    Period size: 12  Copynumber: 2.8  Consensus size: 13

       1035 TAATAAAAAA

                         
       1045 AAAAAATATTATT
          1 AAAAAATATTATT

                         
       1058 -AAAAATATT-TT
          1 AAAAAATATTATT

                       
       1069 AAAAAATATTA
          1 AAAAAATATTA

       1080 GTTGAACCTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    2  0.10
  12   18  0.90

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (13 bp):   
AAAAAATATTATT
Done.