genome.fa.s13298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013298.1 Kokia drynarioides strain JFW-HI SEQ_128320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77148

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2528	216	12.2	199	68	16	1039	28	17	14	39	1.89
1--908	414	2.2	417	81	4	1059	28	17	15	39	1.90
1628--2528	213	4.3	212	78	8	851	28	16	14	39	1.89
1623--2450	424	1.9	424	81	4	975	27	17	15	39	1.90
3417--3465	24	2.0	26	88	8	75	61	4	8	26	1.42
4733--4773	17	2.4	17	91	0	64	31	19	36	12	1.89
5238--5332	39	2.4	39	92	0	163	26	5	16	51	1.66
8633--8714	15	5.5	15	74	11	78	28	26	18	26	1.98
8785--9242	216	2.1	216	87	3	654	27	18	14	39	1.89
9178--9303	61	2.0	62	87	4	184	26	16	16	40	1.90
9240--9730	215	2.3	215	87	2	709	28	16	14	40	1.88
9670--9792	62	2.0	62	93	0	210	27	15	17	39	1.89
9732--10439	216	3.3	213	81	4	785	29	17	13	39	1.88
10378--10622	62	4.0	62	83	6	275	28	16	15	40	1.89
10380--10609	124	1.9	123	87	4	338	28	15	16	40	1.88
10563--11276	216	3.3	216	84	2	909	29	16	13	40	1.87
9670--11396	833	2.1	831	85	2	2273	28	16	14	40	1.88
11231--11400	62	2.7	62	91	0	268	24	18	16	40	1.90
11784--12557	216	3.6	216	86	2	1031	29	18	13	39	1.89
12430--12703	144	1.9	144	90	1	442	29	18	12	39	1.88
12215--12913	360	1.9	360	88	1	1062	28	17	13	39	1.88
12574--13815	216	5.8	216	86	1	1675	27	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17306--17379	12	6.1	12	72	13	53	60	4	14	20	1.50
22060--22163	50	2.1	50	100	0	208	50	15	14	19	1.77
28476--28508	11	2.8	12	86	13	50	39	0	0	60	0.97
28483--28508	11	2.4	11	100	0	52	30	0	0	69	0.89
28556--28640	20	4.2	20	71	17	61	31	0	8	60	1.26
28590--28639	19	2.7	18	79	14	57	30	0	10	60	1.30
28687--28716	9	3.3	9	95	0	51	40	10	3	46	1.54
33243--33281	14	2.8	14	96	0	69	43	12	0	43	1.42
34601--34649	18	2.7	19	81	12	59	26	4	16	53	1.61
35505--35540	19	1.9	19	88	5	56	75	0	13	11	1.06
37152--37207	24	2.3	24	93	0	94	69	5	19	5	1.28
42124--42347	77	2.9	77	95	0	403	40	24	7	28	1.81
46466--46505	21	1.9	21	85	10	55	47	5	10	37	1.59
47126--47150	7	3.6	7	100	0	50	28	44	0	28	1.55
53183--53215	13	2.6	13	90	4	50	72	0	18	9	1.10
53193--53241	19	2.6	19	81	18	66	75	2	12	10	1.13
61356--61559	105	1.9	105	89	0	318	41	15	23	19	1.89
65144--65676	282	1.9	282	90	1	845	46	15	18	20	1.84
68252--68295	22	2.0	22	95	0	79	25	18	11	45	1.82
76225--76262	19	2.0	19	90	10	60	73	5	13	7	1.22

Tables:   1

The End!