Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000133.1 Kokia drynarioides strain JFW-HI SEQ_110782, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7235
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36


Found at i:5536 original size:15 final size:15

Alignment explanation


    Indices: 5518--5549  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       5508 AATGATTTTT

                       *   
       5518 ATGTTAAAGGATTAA
          1 ATGTTAAAGGAATAA

                           
       5533 ATGTTAAAGGAATAA
          1 ATGTTAAAGGAATAA

              
       5548 AT
          1 AT

       5550 TTGTAAGGGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31


Consensus pattern (15 bp):   
ATGTTAAAGGAATAA
Done.