Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013301.1 Kokia drynarioides strain JFW-HI SEQ_128323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3914
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2735 original size:10 final size:10

Alignment explanation


    Indices: 2720--2756  Score: 65
    Period size: 10  Copynumber: 3.7  Consensus size: 10

       2710 GATGATTATG

                      
       2720 GAAATTCCTT
          1 GAAATTCCTT

                   *  
       2730 GAAATTCTTT
          1 GAAATTCCTT

                      
       2740 GAAATTCCTT
          1 GAAATTCCTT

                   
       2750 GAAATTC
          1 GAAATTC

       2757 TAGGTAAAAG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  10   25  1.00

ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41


Consensus pattern (10 bp):   
GAAATTCCTT

Found at i:2743 original size:20 final size:20

Alignment explanation


    Indices: 2720--2757  Score: 76
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2710 GATGATTATG

                                
       2720 GAAATTCCTTGAAATTCTTT
          1 GAAATTCCTTGAAATTCTTT

                              
       2740 GAAATTCCTTGAAATTCT
          1 GAAATTCCTTGAAATTCT

       2758 AGGTAAAAGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42


Consensus pattern (20 bp):   
GAAATTCCTTGAAATTCTTT
Done.