Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013307.1 Kokia drynarioides strain JFW-HI SEQ_128329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2790
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:869 original size:15 final size:16

Alignment explanation


    Indices: 849--881  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        839 CTCTTTATTC

                            
        849 TCTTCTTC-CTTTTCT
          1 TCTTCTTCACTTTTCT

                     *      
        864 TCTTCTTCATTTTTCT
          1 TCTTCTTCACTTTTCT

              
        880 TC
          1 TC

        882 AAATGGTCAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    8  0.50
  16    8  0.50

ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67


Consensus pattern (16 bp):   
TCTTCTTCACTTTTCT
Done.