Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013310.1 Kokia drynarioides strain JFW-HI SEQ_128332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3167
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35


Found at i:22 original size:6 final size:6

Alignment explanation


    Indices: 11--50  Score: 71
    Period size: 6  Copynumber: 6.7  Consensus size: 6

          1 CCGCCGCCAG

                                                   *      
         11 CACCTC CACCTC CACCTC CACCTC CACCTC CACCCC CACC
          1 CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CACC

         51 AAAACCGCCG


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.17, C:0.70, G:0.00, T:0.12


Consensus pattern (6 bp):   
CACCTC

Found at i:2631 original size:23 final size:23

Alignment explanation


    Indices: 2605--2655  Score: 84
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       2595 TTCGTGTGCT

                     *             
       2605 TACTGATTTGCGCTATGTACGCC
          1 TACTGATTTACGCTATGTACGCC

                              *    
       2628 TACTGATTTACGCTATGTGCGCC
          1 TACTGATTTACGCTATGTACGCC

                 
       2651 TACTG
          1 TACTG

       2656 GATTGCACTG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  23   26  1.00

ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35


Consensus pattern (23 bp):   
TACTGATTTACGCTATGTACGCC
Done.