Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013311.1 Kokia drynarioides strain JFW-HI SEQ_128333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3775
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.29

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:3053 original size:18 final size:18

Alignment explanation


    Indices: 3030--3072  Score: 68
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       3020 AAAAGTTGTA

                              
       3030 AAATTATATACATTATAC
          1 AAATTATATACATTATAC

                      *   *   
       3048 AAATTATATAGATTCTAC
          1 AAATTATATACATTATAC

                   
       3066 AAATTAT
          1 AAATTAT

       3073 TTTGCCCACA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40


Consensus pattern (18 bp):   
AAATTATATACATTATAC
Done.