genome.fa.s13315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013315.1 Kokia drynarioides strain JFW-HI SEQ_128337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101546

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11118--11838	205	3.6	205	91	1	1107	34	19	23	22	1.96
12156--12216	11	5.5	11	81	11	70	42	1	0	55	1.09
12163--12225	6	10.8	6	81	13	69	46	1	0	52	1.10
12156--12216	17	3.6	17	86	8	88	42	1	0	55	1.09
13050--13150	3	32.0	3	80	7	103	57	3	2	35	1.33
14135--14338	30	6.9	29	81	6	189	33	30	2	32	1.73
14135--14324	59	3.2	60	79	4	197	35	30	3	31	1.73
14164--14334	89	1.9	87	85	4	236	33	28	3	34	1.74
14145--14373	30	7.8	28	81	10	101	32	31	3	32	1.75
14322--14488	88	1.9	90	81	8	207	31	29	6	32	1.83
14624--14694	6	12.5	6	74	16	71	43	1	1	53	1.18
14624--14694	11	6.2	12	77	14	71	43	1	1	53	1.18
14626--14693	27	2.4	27	90	4	100	41	1	1	55	1.18
14591--14680	17	5.2	16	81	12	92	42	0	3	54	1.17
14591--14680	18	5.2	17	81	10	103	42	0	3	54	1.17
15390--15441	3	17.3	3	79	0	59	59	1	3	34	1.27
15397--15443	24	2.0	24	100	0	94	59	2	4	34	1.29
16513--17021	59	8.8	60	80	9	497	33	32	4	30	1.78
16520--17038	29	17.9	29	70	17	285	32	32	4	30	1.78
16517--16961	88	5.0	86	70	17	342	33	31	4	30	1.78
16913--17015	51	2.0	51	90	0	161	28	34	4	32	1.78
16513--17038	118	4.5	119	79	9	549	32	32	4	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20270--20329	18	3.3	18	74	6	50	38	3	1	56	1.26
20584--20635	14	3.8	14	79	2	52	61	0	0	38	0.96
20597--20638	14	3.0	14	85	0	57	69	0	0	30	0.89
25380--25422	5	8.6	5	94	0	59	0	6	39	53	1.28
27127--27169	19	2.3	19	80	8	52	37	6	4	51	1.50
28787--28820	18	1.9	18	88	5	52	29	0	5	64	1.17
30287--30385	51	1.9	51	83	0	126	38	17	3	41	1.65
30468--30504	19	1.9	19	94	0	65	59	2	0	37	1.12
31721--31846	63	2.0	63	81	6	148	29	13	13	43	1.82
33853--34011	82	2.0	81	93	1	273	41	11	4	42	1.60
48059--48102	16	2.8	16	78	0	52	70	2	2	25	1.10
48734--48942	105	2.0	106	98	0	402	19	9	11	59	1.58
48876--48918	20	2.1	20	83	12	52	13	2	11	72	1.22
48742--48957	106	2.0	104	92	1	306	18	9	13	57	1.63
49942--49978	17	2.1	18	90	5	58	24	16	13	45	1.83
50692--50729	20	1.9	20	84	10	51	55	7	0	36	1.29
51853--51914	30	2.1	30	90	0	97	32	9	11	46	1.72
53901--53996	28	3.4	27	81	2	102	33	15	19	31	1.93
53916--53991	14	5.4	14	73	14	59	36	15	17	30	1.91
53914--54039	56	2.3	56	84	5	166	34	17	19	28	1.94
53918--54005	28	3.1	28	80	3	106	36	17	18	28	1.93
60825--60865	5	8.0	5	94	2	55	0	21	4	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63051--63133	30	2.8	31	77	15	95	28	4	30	36	1.78
63106--63376	57	4.7	57	76	7	174	36	4	23	34	1.75
63065--63349	29	9.8	29	73	6	150	35	4	24	35	1.77
63076--63304	86	2.7	87	77	8	218	37	3	22	35	1.73
63171--63332	57	2.8	57	85	1	198	37	5	21	35	1.77
63114--63332	115	1.9	116	83	4	291	37	4	21	35	1.74
63277--63361	30	2.9	30	77	5	84	32	4	28	34	1.78
64499--64555	15	3.8	15	72	9	53	33	5	7	54	1.50
66252--66284	5	6.6	5	100	0	66	39	21	21	18	1.93
68535--68574	15	2.4	18	80	16	50	62	0	2	35	1.09
72303--72383	29	2.9	29	75	14	89	43	1	2	53	1.22
73479--73521	18	2.4	18	80	7	52	51	2	0	46	1.13
79271--79462	96	2.0	96	100	0	384	34	12	19	33	1.90
82653--82733	6	14.2	6	67	14	55	41	1	2	54	1.21
82686--82733	18	2.8	17	90	9	71	39	0	4	56	1.19
82686--82743	17	3.4	16	80	20	64	39	0	5	55	1.22
82683--82762	35	2.3	34	80	8	90	40	2	5	52	1.37
83416--83458	3	14.0	3	80	4	50	60	0	2	37	1.10
84494--84550	30	1.9	30	85	0	78	33	21	3	42	1.70
84480--84816	59	5.8	59	73	16	201	33	22	3	40	1.70
84502--84690	30	6.4	29	72	10	141	32	24	3	39	1.73
84666--84761	30	3.4	29	69	25	87	32	18	3	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84663--84798	55	2.4	55	85	7	175	32	22	2	42	1.68
84818--84936	28	4.1	29	76	11	95	30	26	10	33	1.89
84873--84936	29	2.2	28	88	2	92	28	29	12	29	1.93
84873--84946	29	2.6	29	85	6	80	27	28	10	33	1.90
85157--85342	97	1.9	97	83	4	241	29	17	15	38	1.90
91676--91721	18	2.5	18	82	3	56	56	2	36	4	1.31
96642--97037	49	8.1	49	72	11	294	38	21	24	16	1.93
96397--96841	231	1.9	231	83	3	581	39	21	23	15	1.91
96701--97099	98	4.1	98	86	0	503	37	21	25	16	1.93
96629--97064	147	3.0	146	76	10	338	38	20	25	15	1.92
96725--97077	49	7.2	49	72	12	240	37	20	26	16	1.93
97578--97674	23	4.5	23	74	17	82	43	2	2	52	1.24
97552--97649	41	2.4	41	89	0	142	39	2	2	56	1.23
97559--97662	17	5.6	17	77	16	100	39	2	1	55	1.26
97552--97674	6	21.2	6	72	9	103	42	2	1	53	1.23
97556--97674	17	6.9	17	80	3	94	42	2	1	52	1.24
98358--98444	3	29.0	3	78	0	93	58	3	2	35	1.27
99474--99638	30	5.7	28	72	14	84	33	24	2	40	1.68
99480--99742	29	9.1	28	69	14	144	33	25	3	38	1.72
99458--99842	59	6.6	58	77	9	300	32	24	3	39	1.73
99480--99842	29	12.5	29	65	14	124	32	24	3	39	1.73
100794--100976	92	2.0	92	91	0	294	33	12	11	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101362--101402	2	20.5	2	100	0	82	51	0	0	48	1.00
101440--101488	17	2.7	19	78	12	57	63	8	4	24	1.40

Tables:   1

The End!