genome.fa.s13316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013316.1 Kokia drynarioides strain JFW-HI SEQ_128338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179042

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398--432	12	2.9	12	86	0	52	40	5	0	54	1.24
1211--1321	6	18.8	6	71	16	72	53	4	1	40	1.32
1290--1330	18	2.3	19	91	8	68	56	0	2	41	1.13
1278--1329	24	2.2	24	82	6	61	57	1	1	38	1.21
1211--1335	17	7.4	17	68	18	66	54	4	3	38	1.35
1297--1337	19	2.2	18	86	4	55	58	0	4	36	1.20
1714--1912	50	4.1	49	79	3	206	11	27	22	38	1.88
6667--6709	18	2.3	19	80	4	52	4	34	2	58	1.32
13733--13945	29	6.9	30	74	16	150	33	1	27	38	1.66
13611--13826	60	3.7	60	75	8	151	39	5	22	32	1.76
13729--14014	59	4.7	58	75	15	224	33	2	27	36	1.69
13842--14014	58	3.0	56	80	8	177	34	2	27	35	1.72
13842--14009	29	5.8	29	75	12	141	34	2	26	35	1.72
13842--14009	87	1.9	87	81	11	202	34	2	26	35	1.72
14923--14957	12	2.9	12	86	0	52	40	5	0	54	1.24
15736--15807	6	12.2	6	75	12	69	52	4	1	41	1.29
15751--15807	23	2.4	24	91	2	89	54	1	1	42	1.21
15736--15783	17	2.8	17	90	9	71	54	6	0	39	1.26
18260--18408	76	2.0	75	91	1	244	45	11	14	28	1.80
20233--20301	28	2.3	29	82	9	77	24	23	20	31	1.98
24176--24207	11	2.8	12	86	13	50	15	28	0	56	1.40
27889--27920	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29016--29040	12	2.1	12	100	0	50	28	32	16	24	1.96
29141--29204	21	3.0	21	74	2	65	21	26	17	34	1.95
33295--33341	17	2.6	17	81	18	60	38	2	2	57	1.23
34969--35107	21	6.3	20	68	17	64	40	4	5	50	1.44
35043--35108	21	3.2	20	81	8	80	40	3	3	53	1.32
36214--36291	39	2.0	39	100	0	156	23	30	17	28	1.97
43392--43535	76	1.9	76	100	0	288	26	12	18	42	1.86
46076--46153	40	2.0	40	94	0	138	26	14	29	29	1.95
49987--50072	6	15.0	6	71	18	67	45	0	2	52	1.13
49987--50066	17	4.7	17	88	0	115	45	0	2	52	1.14
50017--50074	17	2.9	21	75	24	70	44	0	1	53	1.10
50079--50104	13	2.0	13	100	0	52	46	23	7	23	1.78
50770--50831	3	21.7	3	87	9	94	66	0	0	33	0.92
51925--52222	29	10.0	29	71	11	201	33	23	2	40	1.66
51952--52222	59	4.6	59	82	5	314	33	22	1	42	1.63
51919--52214	30	10.0	29	72	9	188	34	23	2	40	1.66
52206--52231	13	2.0	13	100	0	52	30	38	0	30	1.58
52222--52392	60	2.9	59	80	4	177	31	26	7	35	1.83
63045--63097	3	17.7	3	100	0	106	67	0	0	32	0.91
64230--64401	30	5.8	30	75	9	165	36	20	0	43	1.56
64175--64393	59	3.7	59	85	1	242	35	20	1	42	1.61
64359--64580	60	3.8	57	78	7	205	34	25	4	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64359--64580	118	1.9	118	82	5	279	34	25	4	35	1.76
64236--64517	89	3.2	87	74	11	225	35	23	2	38	1.69
64566--64626	29	2.1	28	84	3	77	36	27	8	27	1.85
66841--66939	39	2.5	39	95	0	171	26	6	15	52	1.65
66985--67047	32	2.0	32	90	0	99	33	11	19	36	1.87
70149--70184	18	1.9	19	88	5	56	69	0	22	8	1.15
73244--73290	8	5.9	8	78	16	53	27	0	12	59	1.34
73238--73291	23	2.4	23	93	3	92	25	0	12	61	1.32
73378--73472	32	3.0	32	93	0	154	31	12	18	36	1.89
78413--78554	26	5.5	26	85	0	169	22	23	16	37	1.93
85086--85120	18	1.9	18	94	0	61	17	25	0	57	1.40
85805--85908	36	2.9	36	88	2	147	34	16	25	23	1.95
97626--97872	24	10.3	24	76	0	179	21	25	16	36	1.94
97623--97830	48	4.3	48	82	0	245	21	25	16	36	1.94
97623--97858	96	2.5	96	85	0	301	21	26	16	36	1.94
97623--97872	72	3.5	70	76	4	239	22	26	16	36	1.94
98526--98751	112	2.0	112	100	0	452	23	20	4	52	1.64
105170--105202	17	1.9	17	88	11	50	66	0	24	9	1.20
115389--115460	27	2.5	28	93	6	119	54	0	0	45	0.99
115388--115460	9	8.8	9	70	27	63	53	0	0	46	1.00
115500--115547	19	2.5	19	80	12	53	2	50	0	47	1.12
116384--116431	9	5.2	9	80	14	53	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116383--116439	9	5.9	10	76	17	50	45	0	1	52	1.11
116380--116422	20	2.2	20	91	0	68	46	0	2	51	1.13
116384--116439	28	2.0	29	85	3	78	44	0	1	53	1.11
128628--128678	24	2.1	24	82	7	59	47	25	7	19	1.76
139590--139670	40	2.0	40	87	0	117	27	28	4	39	1.77
141483--141523	20	2.0	20	100	0	82	29	14	14	41	1.86
143154--143211	26	2.2	26	81	6	64	18	12	1	67	1.31
150315--150372	3	19.3	3	96	0	107	32	1	0	65	1.03
152754--152787	7	4.7	7	85	7	50	29	23	26	20	1.99
152754--152787	15	2.4	14	90	5	50	29	23	26	20	1.99
157504--157653	23	6.4	23	88	4	185	44	22	22	11	1.84
161667--161698	11	2.9	11	95	0	55	43	18	12	25	1.85
163357--163403	21	2.2	21	77	7	51	29	31	8	29	1.87
166515--166553	21	1.9	21	89	5	62	43	0	20	35	1.52
166669--166699	15	2.1	15	93	0	53	12	9	29	48	1.73
170901--170929	13	2.2	13	100	0	58	6	6	6	79	1.06
172971--173132	26	6.3	26	74	8	118	27	24	18	29	1.98
172955--173126	52	3.4	50	77	5	166	26	25	19	28	1.99
172955--173164	103	2.0	102	80	4	235	28	26	17	28	1.98
175535--175597	26	2.5	25	82	10	83	50	9	1	38	1.44
175851--175923	31	2.4	31	88	11	107	46	20	12	20	1.82
176131--176255	57	2.2	57	97	0	232	56	23	1	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177921--177962	22	1.9	22	90	0	66	45	11	4	38	1.62
178243--178305	17	3.8	16	77	8	54	46	0	4	49	1.23
178940--179023	32	2.7	31	80	14	100	58	2	0	39	1.11

Tables:   1

The End!