Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013318.1 Kokia drynarioides strain JFW-HI SEQ_128340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2196
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.38

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:123 original size:18 final size:17

Alignment explanation


    Indices: 71--123  Score: 63
    Period size: 17  Copynumber: 3.0  Consensus size: 17

         61 TTTTCGAACA

                               
         71 TTTGGTTTTAGACTATGTT
          1 TTTGGTTTT-GACT-TGTT

                 *           
         90 TTTGGATTTG-CTTGTT
          1 TTTGGTTTTGACTTGTT

                              
        106 TTTGGGTTTTGACTTGTT
          1 TTT-GGTTTTGACTTGTT

        124 CGTCGGTTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 5
        0.81            0.05        0.14

Matches are distributed among these distances:
  16    7  0.23
  17    8  0.27
  18    7  0.23
  19    8  0.27

ACGTcount: A:0.09, C:0.06, G:0.25, T:0.60


Consensus pattern (17 bp):   
TTTGGTTTTGACTTGTT
Done.