Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013331.1 Kokia drynarioides strain JFW-HI SEQ_128353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 722

Length: 1204
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34


Found at i:1189 original size:18 final size:17

Alignment explanation


    Indices: 1160--1197  Score: 58
    Period size: 18  Copynumber: 2.2  Consensus size: 17

       1150 ATTTTTAATA

                           * 
       1160 TATATTTTAAATTATTT
          1 TATATTTTAAATTATGT

                              
       1177 TATATTATTAAATTATGT
          1 TATATT-TTAAATTATGT

               
       1195 TAT
          1 TAT

       1198 TGTCTTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17    6  0.32
  18   13  0.68

ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61


Consensus pattern (17 bp):   
TATATTTTAAATTATGT
Done.