Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013335.1 Kokia drynarioides strain JFW-HI SEQ_128357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98821
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:19608 original size:13 final size:13
Alignment explanation
Indices: 19592--19616 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19582 CTAAGTTAAA
19592 ATGCTAAAAATGC
1 ATGCTAAAAATGC
19605 ATGCTAAAAATG
1 ATGCTAAAAATG
19617 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:20882 original size:11 final size:11
Alignment explanation
Indices: 20866--20953 Score: 66
Period size: 11 Copynumber: 8.4 Consensus size: 11
20856 CCACGTCAGC
20866 AAATTATTTTA
1 AAATTATTTTA
20877 AAATTA--TTA
1 AAATTATTTTA
20886 AAATTATTTTTTCA
1 AAATTA--TTTT-A
20900 AAA-TA---TA
1 AAATTATTTTA
20907 AAATTA--TTA
1 AAATTATTTTA
20916 AAATTATTTTA
1 AAATTATTTTA
* *
20927 AAATTAATTTG
1 AAATTATTTTA
20938 AAATTATTTTTA
1 AAATTA-TTTTA
20950 AAAT
1 AAAT
20954 ATAAAATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
7 4 0.06
8 3 0.05
9 17 0.27
11 24 0.38
12 7 0.11
13 4 0.06
14 4 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (11 bp):
AAATTATTTTA
Found at i:20986 original size:52 final size:52
Alignment explanation
Indices: 20866--20977 Score: 178
Period size: 50 Copynumber: 2.2 Consensus size: 52
20856 CCACGTCAGC
*
20866 AAATTATTTTAAAATT-A-TTAAAATTATTTTTTCAAAATATAAAATTATTA
1 AAATTATTTTAAAATTAATTTGAAATTATTTTTTCAAAATATAAAATTATTA
20916 AAATTATTTTAAAATTAATTTGAAATTA-TTTTT-AAAATATAAAATTATTA
1 AAATTATTTTAAAATTAATTTGAAATTATTTTTTCAAAATATAAAATTATTA
*
20966 AATTTATTTTAA
1 AAATTATTTTAA
20978 TATTTTAATC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
50 44 0.76
51 6 0.10
52 8 0.14
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (52 bp):
AAATTATTTTAAAATTAATTTGAAATTATTTTTTCAAAATATAAAATTATTA
Found at i:21736 original size:99 final size:99
Alignment explanation
Indices: 21560--21757 Score: 324
Period size: 99 Copynumber: 2.0 Consensus size: 99
21550 TTCCTAAGAA
* * *
21560 ATGAAATTGAAATAGAGAACCTTGAAGGGTTGGGAGAGTGGTGGAAGAAGAAGAAGTCATGGTTT
1 ATGAAATTGAAATAGAGAACCTTGAAGGGTAGGGAGAGTGATGGAAGAAGAAGAAGCCATGGTTT
*
21625 GATTCAGAATCCAAGTGGAGAAGTAGTCATGGTT
66 GATTCAAAATCCAAGTGGAGAAGTAGTCATGGTT
* *
21659 ATGAGATTGAAATAGAGAACCTTGCAGGGTAGGGAGAGTGATGGAAGAAGAAGAAGCCATGGTTT
1 ATGAAATTGAAATAGAGAACCTTGAAGGGTAGGGAGAGTGATGGAAGAAGAAGAAGCCATGGTTT
* *
21724 GGTTCAAAATCCAAGTTGAGAAGTAGTCATGGTT
66 GATTCAAAATCCAAGTGGAGAAGTAGTCATGGTT
21758 TGGTTCAAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 91 1.00
ACGTcount: A:0.35, C:0.08, G:0.33, T:0.24
Consensus pattern (99 bp):
ATGAAATTGAAATAGAGAACCTTGAAGGGTAGGGAGAGTGATGGAAGAAGAAGAAGCCATGGTTT
GATTCAAAATCCAAGTGGAGAAGTAGTCATGGTT
Found at i:21867 original size:17 final size:17
Alignment explanation
Indices: 21842--21894 Score: 67
Period size: 14 Copynumber: 3.2 Consensus size: 17
21832 TTAGATGGAA
21842 AAATGGGGAAGAAGATG
1 AAATGGGGAAGAAGATG
*
21859 AAATTGGGAAAGAA-AT-
1 AAA-TGGGGAAGAAGATG
21875 -AATGGGGAAGAAGATG
1 AAATGGGGAAGAAGATG
21891 AAAT
1 AAAT
21895 TGAAAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 9 0.30
15 4 0.13
17 8 0.27
18 9 0.30
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.15
Consensus pattern (17 bp):
AAATGGGGAAGAAGATG
Found at i:21871 original size:18 final size:18
Alignment explanation
Indices: 21845--21896 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
21835 GATGGAAAAA
21845 TGGGGAAGAAGATGAAAT
1 TGGGGAAGAAGATGAAAT
*
21863 TGGGAAAGAA-AT--AA-
1 TGGGGAAGAAGATGAAAT
21877 TGGGGAAGAAGATGAAAT
1 TGGGGAAGAAGATGAAAT
21895 TG
1 TG
21897 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 4 0.14
17 4 0.14
18 11 0.39
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (18 bp):
TGGGGAAGAAGATGAAAT
Found at i:21938 original size:22 final size:20
Alignment explanation
Indices: 21913--21957 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
21903 AAAATTATTT
21913 AATAATTTTAAGTTAATTGTAA
1 AATAATTTTAA--TAATTGTAA
*
21935 AATAATTTTAATAATTTTAA
1 AATAATTTTAATAATTGTAA
21955 AAT
1 AAT
21958 CATTCGCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
AATAATTTTAATAATTGTAA
Found at i:25949 original size:382 final size:382
Alignment explanation
Indices: 25243--25987 Score: 1400
Period size: 382 Copynumber: 2.0 Consensus size: 382
25233 CGTCTTTTGG
*
25243 AATACCAATTGCTTCTACCCACTTGGACATATAATCTACTACGACTAGGATGTAAGCATTTCCAA
1 AATACCAATTGCTTCCACCCACTTGGACATATAATCTACTACGACTAGGATGTAAGCATTTCCAA
25308 AAGAACTTGAAAATGCCCCAATGAAATCAATACCCCAAACATCAAAAAGCTCAACCTCCATAATA
66 AAGAACTTGAAAATGCCCCAATGAAATCAATACCCCAAACATCAAAAAGCTCAACCTCCATAATA
* *
25373 GGTTGTTGCATCATCTCGTTGCGTCGAGATATCGATCCAGTGCGCTGACATTTGTCACATTGTTA
131 GGTTGTTGCATCATCTCGTTGCGTCGAGATATCGATCCAGTGCACTGACATTTGTCACATTATTA
25438 CACAAAATTATGGGCATCTCTAAACAATGAAGGCTAATAAAATCCTGATTGAAGGACCTTTGTAA
196 CACAAAATTATGGGCATCTCTAAACAATGAAGGCTAATAAAATCCTGATTGAAGGACCTTTGTAA
*
25503 CAGTCCTTACACCACCAAAATGACCTACATAGGGAGCATCATGGAAATGTTTCAGGATAGGAAGC
261 CAGTCCTTACACCACCAAAATGACCTACATAGGGAGCATCATGGAAATGCTTCAGGATAGGAAGC
25568 ATATCTTCTTCTGGAACGTAGTGTCGAATAATATTGTCTTCTGGAAATGACCTAATA
326 ATATCTTCTTCTGGAACGTAGTGTCGAATAATATTGTCTTCTGGAAATGACCTAATA
25625 AATACCAATTGCTTCCACCCACTTGGACATATAATCTACTACGACTAGGATGTAAGCATTTCCAA
1 AATACCAATTGCTTCCACCCACTTGGACATATAATCTACTACGACTAGGATGTAAGCATTTCCAA
* * *
25690 AAGAACTTGGAAATGCCTCAATGAAATCAATACCCCAAACATCAAAAAGCTTAACCTCCATAATA
66 AAGAACTTGAAAATGCCCCAATGAAATCAATACCCCAAACATCAAAAAGCTCAACCTCCATAATA
25755 GGTTGTTGCATCATCTCGTTGCGTCGAGATATCGATCCAGTGCACTGACATTTGTCACATTATTA
131 GGTTGTTGCATCATCTCGTTGCGTCGAGATATCGATCCAGTGCACTGACATTTGTCACATTATTA
* *
25820 CACAAAATTATGGGCATCTCTAAACAATGAGGGCTAATAAAATCCTTATTGAAGGACCTTTGTAA
196 CACAAAATTATGGGCATCTCTAAACAATGAAGGCTAATAAAATCCTGATTGAAGGACCTTTGTAA
*
25885 CAGTCGTTACACCACCAAAATGACCTACATAGGGAGCATCATGGAAATGCTTCAGGATAGGAAGC
261 CAGTCCTTACACCACCAAAATGACCTACATAGGGAGCATCATGGAAATGCTTCAGGATAGGAAGC
25950 ATATCTTCTTCTGGAACGTAGTGTCGAATAATATTGTC
326 ATATCTTCTTCTGGAACGTAGTGTCGAATAATATTGTC
25988 GTTGCATACC
Statistics
Matches: 353, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
382 353 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (382 bp):
AATACCAATTGCTTCCACCCACTTGGACATATAATCTACTACGACTAGGATGTAAGCATTTCCAA
AAGAACTTGAAAATGCCCCAATGAAATCAATACCCCAAACATCAAAAAGCTCAACCTCCATAATA
GGTTGTTGCATCATCTCGTTGCGTCGAGATATCGATCCAGTGCACTGACATTTGTCACATTATTA
CACAAAATTATGGGCATCTCTAAACAATGAAGGCTAATAAAATCCTGATTGAAGGACCTTTGTAA
CAGTCCTTACACCACCAAAATGACCTACATAGGGAGCATCATGGAAATGCTTCAGGATAGGAAGC
ATATCTTCTTCTGGAACGTAGTGTCGAATAATATTGTCTTCTGGAAATGACCTAATA
Found at i:33223 original size:26 final size:26
Alignment explanation
Indices: 33176--33262 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 26
33166 TCTCATTCCA
* * *
33176 ATTTTA-CCTCAGCAAAATTTTAACA
1 ATTTTACCCTTAGTAAAATTTTAACG
*
33201 ATTTTACTCC-TAGTAAAATTTTAATG
1 ATTTTAC-CCTTAGTAAAATTTTAACG
* *
33227 ATTTTACCCTTGGTAAAATTTTGACG
1 ATTTTACCCTTAGTAAAATTTTAACG
33253 ATTTTACCCT
1 ATTTTACCCT
33263 GAAAAAATTC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.15
26 42 0.81
27 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTAGTAAAATTTTAACG
Found at i:40138 original size:9 final size:9
Alignment explanation
Indices: 40126--40163 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
40116 CAGCAATTTA
40126 TTCTTCTTT
1 TTCTTCTTT
40135 TTCTT-TTCT
1 TTCTTCTT-T
40144 TTCTTCTTT
1 TTCTTCTTT
*
40153 TTCTTATTT
1 TTCTTCTTT
40162 TT
1 TT
40164 ATTTTTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTCTTCTTT
Found at i:50904 original size:16 final size:16
Alignment explanation
Indices: 50872--50905 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
50862 TATACAAATT
*
50872 AAAGAATTATTAGAAA
1 AAAGAATTAATAGAAA
50888 AAAG-ATTAATAGAAA
1 AAAGAATTAATAGAAA
50903 AAA
1 AAA
50906 CTAATAGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAGAATTAATAGAAA
Found at i:53616 original size:43 final size:43
Alignment explanation
Indices: 53562--53665 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
53552 ACACAAGACA
* * *
53562 AAGGAAACTACATGGAAAAAGCCACATTCAAGAAACAACAAAG
1 AAGGAAGCTACATGGAAAAAACAACATTCAAGAAACAACAAAG
* ** *
53605 AAGGAAGCTACATGGAAAAAACAACTTTCAAGAAATGATAAAG
1 AAGGAAGCTACATGGAAAAAACAACATTCAAGAAACAACAAAG
*
53648 AAGGAAGCTACGTGGAAA
1 AAGGAAGCTACATGGAAA
53666 CCACCTACTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.53, C:0.14, G:0.20, T:0.12
Consensus pattern (43 bp):
AAGGAAGCTACATGGAAAAAACAACATTCAAGAAACAACAAAG
Found at i:53835 original size:12 final size:12
Alignment explanation
Indices: 53803--53838 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
53793 CTAGATAAGG
*
53803 CATTCAAGCTTT
1 CATTCAAGTTTT
53815 CATTCAAGTTTT
1 CATTCAAGTTTT
*
53827 CCTTCAAGTTTT
1 CATTCAAGTTTT
53839 TCTCAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.47
Consensus pattern (12 bp):
CATTCAAGTTTT
Found at i:55193 original size:126 final size:126
Alignment explanation
Indices: 55038--55293 Score: 485
Period size: 126 Copynumber: 2.0 Consensus size: 126
55028 ATAGTCTGAT
*
55038 ATAGGGATATTTGTAATATCTAAATATATTCCTCTTTTAACAATATTTCTTTTATTAAGATCATC
1 ATAGGGATATTTGTAAGATCTAAATATATTCCTCTTTTAACAATATTTCTTTTATTAAGATCATC
* *
55103 TATCCTATGAGAGATTGGTTGGGTAGATGGTTCTCCTAAGTTTTCTGATTTTATTTCATTA
66 TATCCTATGAGAGATTGGTTAGGTAGATGGTTCTCCTAAATTTTCTGATTTTATTTCATTA
55164 ATAGGGATATTTGTAAGATCTAAATATATTCCTCTTTTAACAATATTTCTTTTATTAAGATCATC
1 ATAGGGATATTTGTAAGATCTAAATATATTCCTCTTTTAACAATATTTCTTTTATTAAGATCATC
55229 TATCCTATGAGAGATTGGTTAGGTAGATGGTTCTCCTAAATTTTCTGATTTTATTTCATTA
66 TATCCTATGAGAGATTGGTTAGGTAGATGGTTCTCCTAAATTTTCTGATTTTATTTCATTA
55290 ATAG
1 ATAG
55294 CAATATTTTC
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (126 bp):
ATAGGGATATTTGTAAGATCTAAATATATTCCTCTTTTAACAATATTTCTTTTATTAAGATCATC
TATCCTATGAGAGATTGGTTAGGTAGATGGTTCTCCTAAATTTTCTGATTTTATTTCATTA
Found at i:56487 original size:12 final size:12
Alignment explanation
Indices: 56472--56497 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
56462 ATTCTCCAAC
56472 TTTTTCTAGAGG
1 TTTTTCTAGAGG
56484 TTTTTCTAGAGG
1 TTTTTCTAGAGG
56496 TT
1 TT
56498 GTTTATCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (12 bp):
TTTTTCTAGAGG
Found at i:57706 original size:15 final size:15
Alignment explanation
Indices: 57686--57715 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57676 TGAACTATTA
*
57686 ATTTTTTCTATTAAT
1 ATTTTTTCTAATAAT
57701 ATTTTTTCTAATAAT
1 ATTTTTTCTAATAAT
57716 TCTTTAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTTTCTAATAAT
Found at i:74651 original size:21 final size:21
Alignment explanation
Indices: 74625--74664 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
74615 ATAAAAAATT
74625 AAAATCAG-AAAAAAAATCTCA
1 AAAATC-GTAAAAAAAATCTCA
*
74646 AAAATCGTATAAAAAATCT
1 AAAATCGTAAAAAAAATCT
74665 GATACCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAATCGTAAAAAAAATCTCA
Found at i:83469 original size:32 final size:32
Alignment explanation
Indices: 83428--83492 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
83418 GTTACTAAAG
83428 TAAGAGTAATCCACCATTGATAAGCATCTTCC
1 TAAGAGTAATCCACCATTGATAAGCATCTTCC
83460 TAAGAGTAATCCACCATTGATAAGCATCTTCC
1 TAAGAGTAATCCACCATTGATAAGCATCTTCC
83492 T
1 T
83493 TAAGCAGGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (32 bp):
TAAGAGTAATCCACCATTGATAAGCATCTTCC
Found at i:85175 original size:23 final size:23
Alignment explanation
Indices: 85149--85219 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 23
85139 TACATTTATA
*
85149 CTCGTCAGTATAATATGTTTACG
1 CTCGTCAGCATAATATGTTTACG
*
85172 CTCGTCAGCATGATATGTTTACG
1 CTCGTCAGCATAATATGTTTACG
* * **
85195 TTCGTCAGCATGATACATTTACG
1 CTCGTCAGCATAATATGTTTACG
85218 CT
1 CT
85220 TACTTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (23 bp):
CTCGTCAGCATAATATGTTTACG
Found at i:96015 original size:21 final size:20
Alignment explanation
Indices: 95989--96029 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
95979 AATAACAACC
*
95989 TATAAAATATAAAATATAAAA
1 TATAAAATA-AAAATAAAAAA
96010 TATAAAATAAAAATAAAAAA
1 TATAAAATAAAAATAAAAAA
96030 ACAAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (20 bp):
TATAAAATAAAAATAAAAAA
Found at i:96024 original size:6 final size:7
Alignment explanation
Indices: 95989--96028 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
95979 AATAACAACC
95989 TATAAAA
1 TATAAAA
95996 TATAAAA
1 TATAAAA
96003 TATAAAA
1 TATAAAA
96010 TATAAAA
1 TATAAAA
96017 TA-AAAA
1 TATAAAA
96023 TA-AAAA
1 TATAAAA
96029 AACAAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 10 0.30
7 23 0.70
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
TATAAAA
Found at i:96029 original size:7 final size:7
Alignment explanation
Indices: 95992--96047 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
95982 AACAACCTAT
*
95992 AAAATAT
1 AAAATAA
*
95999 AAAATAT
1 AAAATAA
*
96006 AAAATAT
1 AAAATAA
96013 AAAAT-A
1 AAAATAA
96019 AAAATAA
1 AAAATAA
96026 AAAA-ACA
1 AAAATA-A
96033 AAAATAA
1 AAAATAA
96040 GAAAATAA
1 -AAAATAA
96048 CAATTTTTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
6 6 0.14
7 30 0.68
8 8 0.18
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (7 bp):
AAAATAA
Done.