genome.fa.s13338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013338.1 Kokia drynarioides strain JFW-HI SEQ_128360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152924

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4924--4984	28	2.2	27	88	2	86	21	19	6	52	1.68
10631--10691	28	2.2	27	88	2	86	21	19	6	52	1.68
11336--11879	201	2.7	201	94	1	939	35	19	23	21	1.96
12236--12296	11	5.4	11	82	5	68	39	0	1	59	1.08
12236--12296	6	10.7	6	77	10	65	39	0	1	59	1.08
12203--12310	17	6.4	17	81	5	121	37	1	1	58	1.20
13412--13536	64	1.9	65	91	1	207	21	34	40	4	1.72
14125--14796	59	11.4	59	86	1	900	33	30	3	32	1.75
14129--14797	295	2.3	294	89	0	1007	33	30	3	31	1.76
16530--16563	18	2.0	18	88	11	54	64	0	5	29	1.17
16853--16888	18	2.1	18	89	5	56	33	0	0	66	0.92
21036--21096	11	5.4	11	82	5	68	39	0	1	59	1.08
21036--21096	6	10.7	6	77	10	65	39	0	1	59	1.08
21003--21110	17	6.4	17	81	5	121	37	1	1	58	1.20
22212--22336	64	1.9	65	91	1	207	21	34	40	4	1.72
22925--23596	59	11.4	59	86	1	900	33	30	3	32	1.75
22929--23597	295	2.3	294	89	0	1007	33	30	3	31	1.76
25330--25363	18	2.0	18	88	11	54	64	0	5	29	1.17
25653--25688	18	2.1	18	89	5	56	33	0	0	66	0.92
29845--29905	11	5.4	11	82	5	68	39	0	1	59	1.08
29845--29905	6	10.7	6	77	10	65	39	0	1	59	1.08
29812--29919	17	6.4	17	81	5	121	37	1	1	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31021--31145	64	1.9	65	91	1	207	21	34	40	4	1.72
31734--32405	59	11.4	59	86	1	900	33	30	3	32	1.75
31738--32406	295	2.3	294	89	0	1007	33	30	3	31	1.76
34139--34172	18	2.0	18	88	11	54	64	0	5	29	1.17
34462--34497	18	2.1	18	89	5	56	33	0	0	66	0.92
38654--38714	11	5.4	11	82	5	68	39	0	1	59	1.08
38654--38714	6	10.7	6	77	10	65	39	0	1	59	1.08
38621--38728	17	6.4	17	81	5	121	37	1	1	58	1.20
39830--39954	64	1.9	65	91	1	207	21	34	40	4	1.72
40543--41214	59	11.4	59	86	1	900	33	30	3	32	1.75
40547--41215	295	2.3	294	89	0	1007	33	30	3	31	1.76
42948--42981	18	2.0	18	88	11	54	64	0	5	29	1.17
43271--43306	18	2.1	18	89	5	56	33	0	0	66	0.92
48390--48447	29	2.0	29	100	0	116	51	20	3	24	1.62
50373--50405	15	2.2	15	94	0	57	24	0	27	48	1.51
50500--50752	43	5.9	43	80	1	238	30	16	23	28	1.97
50508--50775	86	3.1	84	79	4	268	29	16	23	30	1.96
50501--50733	129	1.8	129	83	3	308	29	17	23	29	1.97
50501--50775	129	2.1	129	80	2	293	30	16	22	29	1.96
50482--50775	43	6.8	43	76	6	211	30	17	23	29	1.96
51623--51682	24	2.6	23	77	12	61	61	3	3	31	1.28
56646--56675	1	30.0	1	100	0	60	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56686--56723	1	38.0	1	100	0	76	100	0	0	0	0.00
62711--62736	3	8.7	3	100	0	52	0	30	0	69	0.89
71471--71497	2	13.5	2	100	0	54	0	48	0	51	1.00
71557--71620	30	2.3	27	85	15	101	18	45	12	23	1.84
81464--81495	2	16.0	2	100	0	64	50	0	0	50	1.00
81962--82009	8	5.9	8	85	2	60	37	2	12	47	1.53
81963--82006	12	3.6	12	81	3	52	36	2	11	50	1.51
95786--95828	20	2.2	20	86	0	59	44	4	0	51	1.22
108193--108229	14	2.6	15	83	8	51	67	5	0	27	1.12
108193--108228	17	2.1	17	89	0	54	69	2	0	27	1.02
122165--122221	24	2.5	23	75	8	62	54	3	1	40	1.28
123909--124052	60	2.4	60	83	4	184	29	18	15	36	1.92
131243--131310	31	2.2	31	82	7	77	36	4	8	50	1.54
134280--134372	43	2.2	43	100	0	186	50	20	8	20	1.74
135809--135890	40	2.0	40	83	4	101	20	13	31	34	1.91
136652--136847	23	8.4	23	83	7	193	41	22	24	11	1.87
138793--138895	40	2.6	40	84	0	125	40	22	14	22	1.90
138957--139016	29	2.1	29	90	0	93	20	18	18	43	1.88
139006--139062	17	3.6	17	70	29	63	22	10	19	47	1.80
139003--139093	29	3.1	29	84	6	121	24	10	21	42	1.85
139009--139103	29	3.3	29	83	5	120	22	11	22	44	1.84
150098--150123	13	2.0	13	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150098--150182	14	5.9	14	68	21	52	58	5	0	35	1.22
152577--152639	4	15.5	4	80	9	65	65	0	34	0	0.93
152577--152639	17	4.1	16	76	19	64	65	0	34	0	0.93
152577--152638	25	2.5	26	79	10	76	64	0	35	0	0.94
152579--152636	29	2.1	27	87	6	80	65	0	34	0	0.93

Tables:   1

The End!