Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013343.1 Kokia drynarioides strain JFW-HI SEQ_128365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40268
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:757 original size:15 final size:15
Alignment explanation
Indices: 739--778 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
729 TTGCAATTCG
739 AGTGTTCGCAACATC
1 AGTGTTCGCAACATC
*
754 AGTGTTCGCAACATG
1 AGTGTTCGCAACATC
*
769 AGTGCTCGCA
1 AGTGTTCGCA
779 TCTTCCAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (15 bp):
AGTGTTCGCAACATC
Found at i:16652 original size:216 final size:215
Alignment explanation
Indices: 16251--20010 Score: 3931
Period size: 216 Copynumber: 17.5 Consensus size: 215
16241 TCCAACTCAG
* * * * *
16251 TAAATAATTTGTC-TGTTTGTAAACAAGTTTTAGTCTTTGAAAT-AAAACTTATTTACCTAAGAA
1 TAAATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * *
16314 TTATCTCTATCTTGGTTCTTGGACGAACTTCCGCACTTGTCAAACTTTTACAAGTTCTTTTACAA
65 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * ** * *
16379 CCAT-GGTTACTTAAAGTATTCAAGGCGATCCATTCCTTTGAGCTATTT-TCCGAACATTTCATG
129 -CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCT-TGAACATTTCATG
* *
16442 CTCGAGAAATCACATCATTTGGTT
192 CTCGAGAAATCGCATCATTTGGTC
*
16466 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTAC-TAGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAGAA
* * *
16530 TTGTTTCTATCTTGGTTCTTGGACGAACTTCCACACTTGTCAAACTTTTATGAGTTCTTTTACAA
65 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA-ACTTGTCAAACTTTTACGAGTTCTTTTATAA
** *
16595 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAATAAATTTCTTGAACATTTCATGGT
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCT
*
16660 CGAGAAATCCCATCATTTGGTC
194 CGAGAAATCGCATCATTTGGTC
* * * * * * *
16682 TAAATAGTTTTTCGTTTTCTAAACAAATCTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * * * * * * * * *
16747 ACTTTCCCTCTTGGTTCTTGGATGAGCTTTCGAACTGGTAAAACTTTTATGAGTTGTATTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* ** * * *
16812 TTCAGTTCCTTAAAAAATTCAAGAAGATCCA-TCTTTCAAGCAATATTCTT-AACA-TTCTATAC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT-TTCTTGAACATTTC-ATGC
*
16874 TC-AGGAAATCGCATTATTTGGTC
193 TCGA-GAAATCGCATCATTTGGTC
16897 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
16962 TGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTAGTCAAACTTTT-CAAGTTCTTTCACAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
17026 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTCGAACATTTCATGCTC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCTC
17091 GAGAAATCGCATCATTTGGTC
195 GAGAAATCGCATCATTTGGTC
* * * *
17112 TAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTGAATTGAAAACTTATTTACGTTAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * * * * * *
17177 ACTTTCTCTCTTGGTTCTTGGACTAACTTTCGAAGTGGTAAAACTTTTATGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
17242 TTTGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTT-TTCGAACATTTCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTT-GAACATTTCATGCT
*
17306 CGAGAAATCGCATCATTTGATC
194 CGAGAAATCGCATCATTTGGTC
*
17328 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
17393 TGTTTCTCTCATGGTTCTTGGACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAAA
66 TGTTTCTCTCTTGGTTCTTGGACGAACTTC-CAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * *
17458 TTCGGTTCCTTAAAGTATTCAAGAC-AGTCTAATCCTTCAATCAATTTTTTGAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCT
17522 CGAGAAATCGCATCATTTGGTC
194 CGAGAAATCGCATCATTTGGTC
* *
17544 TAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * * *
17609 TGTAT-T-TATTAGTTCTTGGATGAACTTCCGAACTAGTAAAACTGTTACGAGTTCCTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * ** * *
17672 TTCGGTTCCTTAAAGTTTTCAAGACAATCCATTCCTTCGAGCTGTTT-TTCGAACGTTTCATCCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTT-GAACATTTCATGCT
**
17736 C-AGGAAATTTCATCATTT-GTC
194 CGA-GAAATCGCATCATTTGGTC
* * * * * *
17757 TTAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTGTTTACCTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
17822 TGTTTCTCTCTT-ATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * ** * **
17886 TTCAGTTCCATATAGTAATCAAGACGATTCATTCCTTTGAGAAAATTT-TTGAACATACCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG-CAATTTCTTGAACATTTCATGCT
* * ** *
17950 -TAGGAAATCGCATAATTTCCTT
194 CGA-GAAATCGCATCATTTGGTC
* * * *
17972 TCAATAGTTTGTCATTTTGTAAACGAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * * * * * *
18037 TGTTTCTCTCTTGGTTCTTATATGTACTTTCGC-ATTTGTCAAACTTTTACAAGCTCTTTTAAAA
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTC-CAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * ** * * *
18101 GTTCGGTTCCTTAAAGTGTTTAAGACGATCCATTCCTTTGAGAAATTT-TTCGAACATTCCATAC
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTT-GAACATTTCATGC
* *
18165 TC-AGTAAATTGCATCATTTGGTT
193 TCGAG-AAATCGCATCATTTGGTC
* * * * * * *
18188 TAGATAGTTTGTCAATTTGTAAACAAGTTTTAGTTTTTGAAATAAAAACTTATTTACCTAAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * *
18253 TGTCTCTCTCTTGGTTTTTGGGCAAAATTCCTCACTTGTCAAACTTTTACGAGTT-TTTTCACAA
66 TGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTT-ATAA
* * * * *
18317 CTTCGGTTACTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCTATTTTCCT-AACATTTCATGG
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC-AATTTCTTGAACATTTCAT-G
* * *
18381 TTTGA-AAATTGCATCATTTGGTC
192 CTCGAGAAATCGCATCATTTGGTC
* * *
18404 TAAATAGGTTT-TCATTTTCTATACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
1 TAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
** * * * *
18468 TACTTT-TGCTCTTGGATCTTGGATGAACTTTCGAA-TTGGT-AAACTTTTACGAGTTTTTTTAT
65 TTGTTTCT-CTCTTGGTTCTTGGACGAAC-TTCCAACTT-GTCAAACTTTTACGAGTTCTTTTAT
* * * *
18530 AACTTCTGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTTCATG
127 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATG
* *
18595 CTCGGGAAATTGCATCATTTGGTC
192 CTCGAGAAATCGCATCATTTGGTC
* *
18619 TAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
18684 TATTTCTCTCTTGGTTCTTGGATGAAGTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAACTTC-CAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * ** **
18749 TTCGGTTTCGTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTT-TCTAAACATACCATAAT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCT-TGAACATTTCATGCT
* * *
18813 CAAGAAATCGCATCATTAGGTT
194 CGAGAAATCGCATCATTTGGTC
** * * *
18835 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAATCTTTAAATTCAAAACTTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * * * * *
18900 AGTTTCTCTCTTGGTTCTTAGA-TATGCTTCCGCATTTATGAAAC-TTTACGACCTT-TTTTAGA
66 TGTTTCTCTCTTGGTTCTTGGACGA-ACTTCC-AACTTGTCAAACTTTTACGA-GTTCTTTTATA
* * * * * * ** *
18962 ACTTTGGTTCCTTAAAGTGTTTAGGATGATCCATTCCTTCAAGAAATTT-TCCAA-ACTTTCATA
128 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACA-TTTCATG
** *
19025 CTC-AGTAAATCATATCATTTGGTT
192 CTCGAG-AAATCGCATCATTTGGTC
* * *
19049 TAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* *
19114 TG--TCTCTCTTGGTTTTTGGACAAACTTTCGC-ACTTGTCAAACTTTTACGAGTTCTTTTATAA
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTC-CAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * ** * * * **
19176 CTTCGGTTACATAAAGTTTTCAAGATAATCCATT-C--CGAGTAA-TTCGTTGAACATTCCATTA
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTC-TTGAACATTTCATGC
* * *
19237 TCGGGAAATCGCATAATTTTGTC
193 TCGAGAAATCGCATCATTTGGTC
* * *
19260 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACATAATTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * * *
19325 TGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTAGTCAAACTATTACGAGTTCTTTCACAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * *
19390 TTCTGTTCCTTAAAGTATTCAAGAC-A---A-TCCAT--AGCAATTTCCTGAACATTTCATGGTC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCTC
*
19448 -AGAAAATCGCATCATTCGGTC
195 GAG-AAATCGCATCATTTGGTC
* * * * *
19469 TAAATAGTTTTTCATTTTCTAAACAACTTTTAGTCTTTGAATTAAAATCTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
** * * * * *
19534 ACTTTCTCTCTTGGTTCTTGGATGAACTTTCAAACTGGTAAAACATTTACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * **
19599 TTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTCCCGAACATTTCATGCTC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCTC
*
19664 GGGAAATCGCATCATTTGGTC
195 GAGAAATCGCATCATTTGGTC
* * *
19685 TAAATAGTTTTTCATTTTGTAAGCAAGTTTTGGTCTTTGAATTAAAAGCTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
*
19750 T-TTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTATTTTATAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* ** * * * * *
19813 TTCGATTCCTTAAAGTATTCAAGATAATTCATTCTTTTAAGCAATATTC-TGAACATTCCATACT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT-TTCTTGAACATTTCATGCT
* * *
19877 CGGGAAATTGCATAATTTGGTC
194 CGAGAAATCGCATCATTTGGTC
* * *
19899 TAAATAGTTTGTTATTTTGTAAATAAGTTTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
19964 TGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTAGTCAAACTTT
66 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTT
20011 GGTGAGTTCT
Statistics
Matches: 2982, Mismatches: 473, Indels: 179
0.82 0.13 0.05
Matches are distributed among these distances:
208 2 0.00
209 170 0.06
210 9 0.00
211 84 0.03
212 31 0.01
213 192 0.06
214 538 0.18
215 650 0.22
216 1280 0.43
217 24 0.01
218 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTCTTGAACATTTCATGCTCG
AGAAATCGCATCATTTGGTC
Found at i:17354 original size:431 final size:430
Alignment explanation
Indices: 16266--20010 Score: 4087
Period size: 431 Copynumber: 8.7 Consensus size: 430
16256 AATTTGTCTG
* * * * * *
16266 TTTGTAAACAAGTTTTAGTCTTTGAAAT-AAAACTTATTTACCTAAGAATTATCTCTATCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TATTTCTCTCTTGGT
* * * * * ** *
16330 TCTTGGACGAACTTCCGCACTTGTCAAACTTTTACAAGTTCTTTTACAACCATGGTTACTTAAAG
65 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAG
* ** * * * *
16395 TATTCAAGGCGATCCATTCCTTTGAGCTATTTTCCGAACATTTCATGCTCGAGAAATCACATCAT
130 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTC-AGAAATCGCATCAT
* *
16460 TTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTAC-T
194 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * *
16524 AGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCACACTTGTCAAACTTTTATGAGTTCTT
259 -GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCTT
* * *
16589 TTACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-AATAAATTTCTTGAACATT
323 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGT-AATTTCTCGAACATT
* * * *
16653 TCATGGTCGAGAAATCCCATCATTTGGTCTAAATAGTTTTTCGT
387 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * * * * *
16697 TTTCTAAACAAATCTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAATACTTTCCCTCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATA-TTTCTCTCTTGGT
* * * * * * ** *
16762 TCTTGGATGAGCTTTCGAACTGGTAAAACTTTTATGAGTTGTATTATAACTTCAGTTCCTTAAAA
65 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAG
* * *
16827 AATTCAAGAAGATCCA-TCTTTCAAGCAATATTCTT--AACA-TTCTATACTCAGGAAATCGCAT
130 TATTCAAGACGATCCATTCCTTCAAGCAAT-TT-TTCGAACATTTC-ATACTCA-GAAATCGCAT
*
16888 TATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
191 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* *
16953 CGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTAGTCAAACTTTT-CAAGTTC
256 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTC
* *
17017 TTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTCGAACAT
321 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTCGAACAT
*
17082 TTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
386 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * *
17127 TTTGTAAATAAGTTTTGGTCTTTGAATTGAAAACTTATTTACGTTAGAATACTTTCTCTCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATA-TTTCTCTCTTGGT
* * * * *
17192 TCTTGGACT-AACTTTCGAAGTGGTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTGAAA
65 TCTTGGA-TGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAA
*
17256 GTATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATGCTCGAGAAATCGCATCA
129 GTATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTC-AGAAATCGCATCA
* *
17321 TTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACG
193 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
*
17386 TGAGAATTGTTTCTCTCATGGTTCTTGGACGAAC-TTCAAAAC-ATGTCAAACTTTTACGAGTTC
258 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTA-GTCAAACTTTTACGAGTTC
* * * * * *
17449 TTTTATAAATTCGGTTCCTTAAAGTATTCAAGAC-AGTCTAATCCTTC-AATCAATTTTTTGAAC
321 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGT-AATTTCTCGAAC
17512 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
384 ATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * * * * *
17559 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT-TGTATTTATTAGTT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATATTTCTCTCTTGGTT
* * * * * *
17623 CTTGGATGAACTTCCGAACTAGTAAAACTGTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGT
66 CTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
* * * ** * * **
17688 TTTCAAGACAATCCATTCCTTCGAGCTGTTTTTCGAACGTTTCATCCTCAGGAAATTTCATCATT
131 ATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTCA-GAAATCGCATCATT
* * * * * *
17753 T-GTCTTAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTGTTTACCTG
195 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
17817 AGAATTGTTTCTCTCTT-ATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
260 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * *
17881 ATAACTTCAGTTCCATATAGTAATCAAGACGATTCATTCCTTTGAGAAAATTT-TTGAACATACC
325 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-TAATTTCTCGAACATTCC
* * ** * * *
17945 ATGCT-TAGGAAATCGCATAATTTCCTTTCAATAGTTTGTCAT
389 ATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * * *
17987 TTTGTAAACGAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TATTTCTCTCTTGGT
** * * * * * * * *
18052 TCTTATATGTACTTTCGCATTTGTCAAACTTTTACAAGCTCTTTTAAAAGTTCGGTTCCTTAAAG
65 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAG
* * ** * * *
18117 TGTTTAAGACGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATACTCAGTAAATTGCATCAT
130 TATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTCAG-AAATCGCATCAT
* * * * * * *
18182 TTGGTTTAGATAGTTTGTCAATTTGTAAACAAGTTTTAGTTTTTGAAATAAAAACTTATTTACCT
194 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * * * ** *
18247 AAGAATTGTCTCTCTCTTGGTTTTTGGGCAAAATTCCTCACTTGTCAAACTTTTACGAGTT-TTT
259 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCTTT
* * * * *
18311 TCACAACTTCGGTTACTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCTATTTTC-CTAACATT
324 T-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-TAATTTCTCGAACATT
* * * * *
18375 TCATGGTTTGA-AAATTGCATCATTTGGTCTAAATAGGTTTTCAT
387 CCAT-GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * *
18419 TTTCTATACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATACTTT-TGCTCTTGG
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATA-TTTCT-CTCTTGG
* *
18483 ATCTTGGATGAACTTTCGAA-TTGGT-AAACTTTTACGAGTTTTTTTATAACTTCT-GTTCCTTA
64 TTCTTGGATGAACTTTCGAACTT-GTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTA
* * * * * *
18545 CAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGGGAAATTGCAT
127 AAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTC-AGAAATCGCAT
* *
18610 CATTTGGTCTAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTA
191 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
18675 CGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-GTTCAAAAC-ATGTCAAACTTTTACGAGT
256 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTA-GTCAAACTTTTACGAGT
* * * *
18738 TCTTTTATAACTTCGGTTTCGTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTT-TCTAAA
319 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTC-GAA
* ** * * * *
18802 CATACCATAATCAAGAAATCGCATCATTAGGTTTAAATAGTTTGTCAT
383 CATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
** * * *
18850 TTTGTAAACAAGTTTTAATCTTTAAATTCAAAACTTATTTACATGAGAATAGTTTCTCTCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATA-TTTCTCTCTTGGT
* * * * * * * * *
18915 TCTTAGAT-ATGCTTCCGCATTTATGAAAC-TTTACGACCTT-TTTTAGAACTTTGGTTCCTTAA
65 TCTTGGATGA-ACTTTCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAA
* * * * * * * **
18977 AGTGTTTAGGATGATCCATTCCTTCAAGAAATTTTCCAAAC-TTTCATACTCAGTAAATCATATC
128 AGTATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTCAG-AAATCGCATC
* * *
19041 ATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTAC
192 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * ** *
19106 CTGAGAATTG--TCTCTCTTGGTTTTTGGACAAACTTTCGCACTTGTCAAACTTTTACGAGTTCT
257 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCT
* * * ** *
19169 TTTATAACTTCGGTTACATAAAGTTTTCAAGATAATCCATT-C--CGAGTAA-TTCGTTGAACAT
322 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTC-TCGAACAT
** * * * *
19230 TCCATTATCGGGAAATCGCATAATTTTGTCTAAATAGTTTGTCAT
386 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * * *
19275 TTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACATAATTACGTGAGAATTGTTTCTCTCTTGGT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TATTTCTCTCTTGGT
* * * * *
19340 TCTTGCATGAACTTTCGAACTAGTCAAACTATTACGAGTTCTTTCACAACTTCT-GTTCCTTAAA
65 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAA
* * **
19404 GTATTCAAGAC-A---A-TCCAT--AGCAA-TTTCCTGAACATTTCATGGTCAGAAAATCGCATC
129 GTATTCAAGACGATCCATTCCTTCAAGCAATTTTTC-GAACATTTCATACTCAG-AAATCGCATC
* * * * * *
19461 ATTCGGTCTAAATAGTTTTTCATTTTCTAAACAACTTTTAGTCTTTGAATTAAAATCTTATTTAC
192 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
** * * * *
19526 GTGAGAATACTTTCTCTCTTGGTTCTTGGATGAACTTTCAAACTGGTAAAACATTTACGAGTTCT
257 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCT
* * * *
19591 TTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTCCCGAACATT
322 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTCGAACATT
* *
19656 TCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
387 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
* * *
19700 TTTGTAAGCAAGTTTTGGTCTTTGAATTAAAAGCTTATTTACGTGAGAAT-TTTTTCTCTTGGTT
1 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATATTTCTCTCTTGGTT
* * * * * *
19764 CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGATTCCTTAAAGT
66 CTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
** * * * * * * * *
19829 ATTCAAGATAATTCATTCTTTTAAGCAA-TATTCTGAACATTCCATACTCGGGAAATTGCATAAT
131 ATTCAAGACGATCCATTCCTTCAAGCAATTTTTC-GAACATTTCATACTC-AGAAATCGCATCAT
* * *
19893 TTGGTCTAAATAGTTTGTTATTTTGTAAATAAGTTTTGGTCTTTGAATTGAAAACTTATTTACGT
194 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* *
19958 GAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTAGTCAAACTTT
259 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTT
20011 GGTGAGTTCT
Statistics
Matches: 2774, Mismatches: 460, Indels: 161
0.82 0.14 0.05
Matches are distributed among these distances:
418 5 0.00
419 7 0.00
420 83 0.03
421 4 0.00
422 82 0.03
423 75 0.03
424 4 0.00
425 220 0.08
426 38 0.01
427 4 0.00
428 241 0.09
429 91 0.03
430 700 0.25
431 780 0.28
432 436 0.16
433 3 0.00
434 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (430 bp):
TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATATTTCTCTCTTGGTT
CTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
ATTCAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTTCATACTCAGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCTTTTA
TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTCTCGAACATTCCAT
GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAT
Found at i:17675 original size:646 final size:642
Alignment explanation
Indices: 16251--20010 Score: 4118
Period size: 646 Copynumber: 5.8 Consensus size: 642
16241 TCCAACTCAG
* * * *
16251 TAAATAATTTGTC-TGTTTGTAAACAAGTTTTAGTCTTTGAAAT-AAAACTTATTTACCTAAGAA
1 TAAATAGTTTGTCAT-TTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAA
* * * * *
16314 TTATCTCTATCTTGGTTCTTGGACGAACTTCCGCACTTGTCAAACTTTTACAAGTTCTTTTACAA
65 TTGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAAC-TTTACGAGTT-TTTTACAA
* * * * *
16379 CCAT-GGTTACTTAAAGTATTCAAGGCGATCCATTCCTTTGAGCTATTTTC-CGAACATTTCATG
128 -CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCATG
* * * *
16442 CTCGAGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAA
192 CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* *
16507 TTAAAAACTTATTTAC-TAGAGAATTGTTTCTATCTTGGTTCTTGGACGAAC-TTCCACACTTGT
257 TTAAAAACTTATTTACGT-GAGAA-T-TTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGT
* *
16570 CAAACTTTTATGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
318 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
** * * * * * *
16635 ATAAATTTCTTGAACATTTCATGGTCGAGAAATCCCATCATTTGGTCTAAATAGTTTTTCGTTTT
383 AGCAATTT-TTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTT
* * * * ** *
16700 CTAAACAAATCTTAGTCTTT-AAATTAAAAACTTATTTACGTGAGAATACTTTCCCTCTTGGTTC
447 GTAAACAAGTTTTGGTCTTTGAAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * * * **
16764 TTGGATGAGCTTTCGAACTGGTAAAACTTTTATGAGTTGTATTATAACTTCAGTTCCTTAAAAAA
511 TTGGATGAACTTTCGAACT-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
16829 TTCAAGA-AGATCCATCTTTCAAGCAATATTCTT-AACATTCTATACTCAGGAAATCGCATTATT
575 TTCAAGACAGATCAATCCTTCAAGCAAT-TTTTTGAACATTCCATACTCA-GAAATCGCATCATT
16892 TGGTC
638 TGGTC
* *
16897 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * * *
16962 TGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTAGTCAAACTTTTCAAGTTCTTTCACAACT
66 TGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTACGAGTT-TTTTACAACT
17027 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-TAATTTCTCGAACATTTCATGCTC
130 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCATGCTC
* *
17091 GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAATAAGTTTTGGTCTTTGAATTG
195 GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * *
17156 AAAACTTATTTACGTTAGAATACTTTCTCTCTTGGTTCTTGGACTAACTTTCGAAGTGGTAAAAC
260 AAAACTTATTTACGTGAGAAT--TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * *
17221 TTTTATGAGTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
323 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAA
* * *
17286 TTTTTCGAACATTTCATGCTCGAGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAA
388 TTTTT-GAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
17351 CAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCATGGTTCTTGGAC
452 CAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT
* *
17416 GAAC-TTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAA
517 GAACTTTC-GAAC-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* *
17480 GACAG-TCTAATCCTTCAATCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTC
580 GACAGATC-AATCCTTCAAGCAATTTTTTGAACATTCCATACTC-AGAAATCGCATCATTTGGTC
* *
17544 TAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * * *
17609 TGTAT-T-TATTAGTTCTTGGATGAACTTCCGAACTAGTAAAACTGTTACGAGTTCCTTTATAAC
66 TGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACT-TTACGAGTT-TTTTACAAC
* * * * * *
17672 TTCGGTTCCTTAAAGTTTTCAAGACAATCCATTCCTTCGAGCT-GTTTTTCGAACGTTTCATCCT
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCATGCT
** * * * *
17736 C-AGGAAATTTCATCATTT-GTCTTAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTCGAAT
194 CGA-GAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * *
17799 TAAAAACTTGTTTACCTGAGAATTGTTTCTCTCTT-ATTCTTGGACGAACTTTCGAACTTGTCAA
258 TAAAAACTTATTTACGTGAGAA-T-TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * **
17863 ACTTTTACGAGTTCTTTTATAACTTCAGTTCCATATAGTAATCAAGACGATTCATTCCTTTGAGA
321 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAG-
* * * ** * *
17928 AAATTTTTGAACATACCATGCT-TAGGAAATCGCATAATTTCCTTTCAATAGTTTGTCATTTTGT
385 CAATTTTTGAACATTCCATGCTCGA-GAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
17992 AAACGAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTA
449 AAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * ** * * * * * *
18057 TATGTACTTTCGCATTTGTCAAACTTTTACAAGCTCTTTTAAAAGTTCGGTTCCTTAAAGTGTTT
514 GATGAACTTTCG-AACTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* ** * * *
18122 AAGAC-GATCCATTCCTTTGAGAAATTTTTCGAACATTCCATACTCAGTAAATTGCATCATTTGG
578 AAGACAGAT-CAATCCTTCAAGCAATTTTTTGAACATTCCATACTCAG-AAATCGCATCATTTGG
*
18186 TT
641 TC
* * * * * *
18188 TAGATAGTTTGTCAATTTGTAAACAAGTTTTAGTTTTTGAAATAAAAACTTATTTACCTAAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * ** *
18253 TGTCTCTCTCTTGGTTTTTGGGCAAAATTCCTCACTTGTCAAACTTTTACGAGTTTTTTCACAAC
66 TGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAAC-TTTACGAGTTTTTT-ACAAC
* * * * *
18318 TTCGGTTACTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCTATTTTC-CTAACATTTCATGGT
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCAT-GC
* * * * * *
18382 TTGA-AAATTGCATCATTTGGTCTAAATAGGTTTTCATTTTCTATACAACTTTTGGTCTTTGAAT
193 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* *
18446 TAAAAACTTATTTACGTGAGAATACTTT-TGCTCTTGGATCTTGGATGAACTTTCGAA-TTGGT-
258 TAAAAACTTATTTACGTGAGAAT--TTTCT-CTCTTGGTTCTTGGACGAACTTTCGAACTT-GTC
* * * *
18508 AAACTTTTACGAGTTTTTTTATAACTTCTGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGA
319 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAA
* * * *
18573 GCAATTTTTTGAACATTTCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
384 GCAA-TTTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTG
* *
18638 TGAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
448 TAAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
18703 GGATGAA-GTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTTCGTAAAGTAT
513 GGATGAACTTTC-GAAC-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * * *
18767 TCAAGAC-GATCCATTCCTTCGAGAAATTTTCTAAACATACCATAATCAAGAAATCGCATCATTA
576 TCAAGACAGAT-CAATCCTTCAAGCAATTTTTTGAACATTCCATACTC-AGAAATCGCATCATTT
*
18831 GGTT
639 GGTC
* * *
18835 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAATCTTTAAATTCAAAACTTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * ** * * *
18900 AGTTTCTCTCTTGGTTCTTAGA-TATGCTTCCGCATTTA-TGAAACTTTACGACCTTTTTTAGAA
66 TGTCTCTCTCTTGGTTCTTGGACGA-ACTTCCG-AACTAGTCAAACTTTACGA-GTTTTTTACAA
* * * * * * * * *
18963 CTTTGGTTCCTTAAAGTGTTTAGGATGATCCATTCCTTCAAG-AAATTT-TCCAA-ACTTTCATA
128 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACA-TTTCATG
** * * * *
19025 CTC-AGTAAATCATATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCTTTGA
192 CTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * * *
19089 ATTAAAAACTTATTTACCTGAGAATTGTCTCTCTTGGTTTTTGGACAAACTTTCGCACTTGTCAA
256 ATTAAAAACTTATTTACGTGAGAATTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * ** * *
19154 ACTTTTACGAGTTCTTTTATAACTTCGGTTACATAAAGTTTTCAAGATAATCCATT-C--CGAGT
321 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGC
* ** * *
19216 AATTCGTTGAACATTCCATTATCGGGAAATCGCATAATTTTGTCTAAATAGTTTGTCATTTTGTA
386 AATT-TTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
19281 AACAAGTTTTGGTCTTT-AAATTAAAAACATAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
450 AACAAGTTTTGGTCTTTGAAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
19345 CATGAACTTTCGAACTAGTCAAACTATTACGAGTTCTTTCACAACTTCTGTTCCTTAAAGTATTC
514 GATGAACTTTCGAACT-GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
* ** * ** *
19410 ---A-AGA-CAATCCAT--AGCAATTTCCTGAACATTTCATGGTCAGAAAATCGCATCATTCGGT
578 AAGACAGATCAATCCTTCAAGCAATTTTTTGAACATTCCATACTCAG-AAATCGCATCATTTGGT
19468 C
642 C
* * * * *
19469 TAAATAGTTTTTCATTTTCTAAACAACTTTTAGTCTTTGAATTAAAATCTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
** * * * * * * *
19534 ACTTTCTCTCTTGGTTCTTGGATGAACTTTCAAACTGGTAAAACATTTACGAGTTCTTTTATAAC
66 TGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAAC-TTTACGAGTT-TTTTACAAC
* * * *
19599 TTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAG-AAATTTCCCGAACATTTCATGCT
129 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCATGCT
* *
19663 CGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAGCAAGTTTTGGTCTTTGAATT
194 CGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
19728 AAAAGCTTATTTACGTGAGAATTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACT
259 AAAAACTTATTTACGTGAGAATTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
* * ** * * *
19793 TTTACGAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGATAATTCATTCTTTTAAGCAAT
324 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAAT
* * * * * *
19858 ATTCTGAACATTCCATACTCGGGAAATTGCATAATTTGGTCTAAATAGTTTGTTATTTTGTAAAT
389 -TTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
19923 AAGTTTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACG
453 AAGTTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
19988 AACTTTCGAACTAGTCAAACTTT
518 AACTTTCGAACT-GTCAAACTTT
20011 GGTGAGTTCT
Statistics
Matches: 2632, Mismatches: 411, Indels: 149
0.82 0.13 0.05
Matches are distributed among these distances:
633 4 0.00
634 123 0.05
635 57 0.02
636 175 0.07
637 2 0.00
638 3 0.00
639 139 0.05
640 9 0.00
641 165 0.06
642 3 0.00
643 32 0.01
644 396 0.15
645 213 0.08
646 680 0.26
647 606 0.23
648 25 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (642 bp):
TAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAAT
TGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTACGAGTTTTTTACAACTT
CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTAATTTCTCGAACATTTCATGCTCG
AGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAGAATTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTT
TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTT
TTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
TTTCGAACTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAGA
TCAATCCTTCAAGCAATTTTTTGAACATTCCATACTCAGAAATCGCATCATTTGGTC
Found at i:20452 original size:17 final size:17
Alignment explanation
Indices: 20432--20464 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20422 TTTAAGGACT
20432 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
20449 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
20465 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:20707 original size:47 final size:49
Alignment explanation
Indices: 20646--20743 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 49
20636 ATGCATTATG
* *
20646 TAATAACATCCATTAACT-C-T-CATGATTAGTTAAGTTTGCATCATAAA
1 TAATAACATCCATTAACTACTTACATG-TTAGTTAAATATGCATCATAAA
* * *
20693 TAATGACATGCATTAAGTAACTTACATGTTAGTTAAATATGCATCATAAA
1 TAATAACATCCATTAACT-ACTTACATGTTAGTTAAATATGCATCATAAA
20743 T
1 T
20744 CCTATCATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
47 15 0.36
49 1 0.02
50 22 0.52
51 4 0.10
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (49 bp):
TAATAACATCCATTAACTACTTACATGTTAGTTAAATATGCATCATAAA
Found at i:20726 original size:50 final size:49
Alignment explanation
Indices: 20659--20811 Score: 141
Period size: 50 Copynumber: 3.1 Consensus size: 49
20649 TAACATCCAT
* *
20659 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAA-TATGCATCATAAATAATGACATGCATTAAG
* ** *
20710 TAACTTACATGTTAGTTAAATATGCATCATAAATCCT-ATCATGCATTATG
1 TAACTCACATGTTAGTT-AATATGCATCATAAATAATGA-CATGCATTAAG
* * * *
20760 CAACTCCCATGTTAGTTAA-ATGCATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAATATGCATCA-TAAAT-AATGACATGCATTAAG
20809 TAA
1 TAA
20812 TTCATTAGTT
Statistics
Matches: 82, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
48 8 0.10
49 19 0.23
50 44 0.54
51 11 0.13
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (49 bp):
TAACTCACATGTTAGTTAATATGCATCATAAATAATGACATGCATTAAG
Found at i:22062 original size:26 final size:26
Alignment explanation
Indices: 22022--22091 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
22012 AAAATTCAAA
* *
22022 AAAAAAAAGAAAAAATATTGAAA-TATTG
1 AAAAAAAA-AAAAAA-ATTCAAAGT-TCG
*
22050 AAAAAAAATAAAAAATTCAAAGTTCG
1 AAAAAAAAAAAAAAATTCAAAGTTCG
*
22076 AAAAAAAAGAAAAAAT
1 AAAAAAAAAAAAAAAT
22092 CGAATTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 23 0.62
27 6 0.16
28 8 0.22
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (26 bp):
AAAAAAAAAAAAAAATTCAAAGTTCG
Found at i:22117 original size:31 final size:33
Alignment explanation
Indices: 22075--22139 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 33
22065 TTCAAAGTTC
22075 GAAAAAAAAG-AAAAAA-TCGA-ATTAAAAAAA
1 GAAAAAAAAGAAAAAAATTCGAGATTAAAAAAA
22105 GAAAAAAGAAGAAAAAAATTCGAGTATTAAAAAAA
1 GAAAAAA-AAGAAAAAAATTCGAG-ATTAAAAAAA
22140 TCAATTTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
30 7 0.23
31 3 0.10
32 6 0.20
33 4 0.13
35 10 0.33
ACGTcount: A:0.72, C:0.03, G:0.12, T:0.12
Consensus pattern (33 bp):
GAAAAAAAAGAAAAAAATTCGAGATTAAAAAAA
Found at i:22122 original size:21 final size:21
Alignment explanation
Indices: 22076--22122 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
22066 TCAAAGTTCG
**
22076 AAAAAAAAGAAAAAATCGAAT
1 AAAAAAAAGAAAAAAAAGAAT
*
22097 TAAAAAAAGAAAAAAGAAGAA-
1 AAAAAAAAGAAAAAA-AAGAAT
22118 AAAAA
1 AAAAA
22123 TTCGAGTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.81, C:0.02, G:0.11, T:0.06
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAAAGAAT
Found at i:25632 original size:13 final size:14
Alignment explanation
Indices: 25613--25651 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
25603 GCAAATAAAG
25613 TGAAAAGAAAGAGA
1 TGAAAAGAAAGAGA
*
25627 -GAAAAGAAAAAGA
1 TGAAAAGAAAGAGA
*
25640 TGAAAAGGAAGA
1 TGAAAAGAAAGA
25652 AAAAGAGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (14 bp):
TGAAAAGAAAGAGA
Found at i:27086 original size:32 final size:32
Alignment explanation
Indices: 27050--27112 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
27040 GCCATCCATA
* *
27050 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
*
27082 CATGTACCTGAAACACATTAATTAGCTAATT
1 CATGTACCTGAAACACATTAATCAGCTAATT
27113 AATTTTGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAGCTAATTG
Found at i:27201 original size:39 final size:39
Alignment explanation
Indices: 27147--27267 Score: 169
Period size: 38 Copynumber: 3.2 Consensus size: 39
27137 CAAACATGAA
* * *
27147 ATTAAAT-TGTCTCAAACTTAGACACCTTAAAAACAACT
1 ATTAAATATGTATCAAACTAAGACACATTAAAAACAACT
*
27185 ATTAAATATGTATCAAAATAAGACACATTAAAAACAACT
1 ATTAAATATGTATCAAACTAAGACACATTAAAAACAACT
*
27224 ATT-AATATGTATCAAACTAAGACACATT-AAAAC-CCT
1 ATTAAATATGTATCAAACTAAGACACATTAAAAACAACT
27260 ATTAAATA
1 ATTAAATA
27268 AACATGTCCA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
36 5 0.07
37 9 0.12
38 31 0.41
39 30 0.40
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.28
Consensus pattern (39 bp):
ATTAAATATGTATCAAACTAAGACACATTAAAAACAACT
Found at i:28351 original size:215 final size:215
Alignment explanation
Indices: 27643--28641 Score: 1114
Period size: 215 Copynumber: 4.6 Consensus size: 215
27633 CTTGTCTGAA
* * * *
27643 CATTCCTTCGAGCAATTTTCTGAACATTCCACGCTCGGGAAATCGCATCATTT-CTTCTGAATAG
1 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTT-TAAATAG
* * * * * * * *
27707 TTTGTCTTTTTTTAAACAATTTTTGGTTTTTAAATTATAAACTTCTTTGCATGAGAATTG-TT-T
65 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCT
* * * *
27770 CTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACATCGGTT
130 CTCTTGGTTCTTGCACGAAC-TTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
*
27835 CCTTAAAGTATTCAAGATGATC
194 CCTTAAAGTATTCAAGACGATC
* * * * * * *
27857 CATTCTTTCAAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTAAATATT
1 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTTTAAATAGT
** * *
27922 TTGTTTTTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACATTAGAATTGTTTCTC
66 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * * * *
27987 TCTTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTTTGATTC
131 TCTTGGTTCTTGCACGAACTT-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
*
28052 CTTAAAGTATTCAAGACAATC
195 CTTAAAGTATTCAAGACGATC
* * * * * * *
28073 CATTCCTTTGAGCAATTTTCCGAACATTTCATGCTC-GAGAAATCACATAATTTTGTCTAAATAG
1 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTTTAAATAG
* * *
28137 TTTATCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACTTGAGAATTGTTTCT
65 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCT
* *
28202 CTCTTGGTT-TTGCACGAACTTCAAAACATGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTT
130 CTCTTGGTTCTTGCACGAACTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
*
28266 -TTGTAAAGTATTCAAGACGATC
194 CCT-TAAAGTATTCAAGACGATC
* * **
28288 CATTCCTTCGAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTTACTTTAAATAGT
1 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTTTAAATAGT
** *
28353 TTGTCATTTTGT-AACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTACTC
66 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * ** * * ** * * * * *
28417 TCTGGGTTTTTAAATGTACTTCTTCATTTGTGAAACTTTTACGAGCTCTTTTAAAACTTTGGTTC
131 TCTTGGTTCTTGCACGAACTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
28482 CTTAAAGTGTTTAAGACGATC
195 CTTAAAGTATTCAAGACGATC
** * * * *
28503 TGTTCCTTCGAGAAATTTT-TCGAACATTCCATACTCAGTAAATTGCATCATTTGGTTTAAATAG
1 CATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTTTAAATAG
* * * * * * * *
28567 TTTGTCAATTTGAAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTAATAATTATCTCT
65 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCT
28632 CTCTTGGTTC
130 CTCTTGGTTC
28642 AAGGACGATC
Statistics
Matches: 660, Mismatches: 113, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
214 158 0.24
215 256 0.39
216 246 0.37
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (215 bp):
CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTTTAAATAGT
TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
TCTTGGTTCTTGCACGAACTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
TTAAAGTATTCAAGACGATC
Found at i:28782 original size:149 final size:149
Alignment explanation
Indices: 28496--28774 Score: 353
Period size: 149 Copynumber: 1.9 Consensus size: 149
28486 AAGTGTTTAA
** * * * *
28496 GACGATCTGTTCCTTCGAGAAATTTTTCGAACATTCCATACTCAGTAAATTGCATCATTTGGTTT
1 GACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCAGGAAATCGCATCATTTCGTCT
* * *
28561 AAATAGTTTGTCAATTTGAAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTAATAATT
66 AAATAGTTTGTCAATTTGAAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATAAGAATT
28626 ATCTCTCTCTTGGTTCAAG
131 ATCTCTCTCTTGGTTCAAG
* * * *
28645 GACGATCCATTCCTTCGAGAAAATTTTT-GACCATTCCATGCTCGGGAAATCGTATCATTTCGTC
1 GACGATCCATTCCTTCGAG-AAATTTTTCGAACATTCCATACTCAGGAAATCGCATCATTTCGTC
* ** * * * * *
28709 TAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAAT
65 TAAATAGTTTGTCAATTTGAAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATAAGAAT
28774 T
130 T
28775 GTTTCTCTTA
Statistics
Matches: 108, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
149 100 0.93
150 8 0.07
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (149 bp):
GACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCAGGAAATCGCATCATTTCGTCT
AAATAGTTTGTCAATTTGAAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACATAAGAATT
ATCTCTCTCTTGGTTCAAG
Found at i:28950 original size:363 final size:362
Alignment explanation
Indices: 28276--29003 Score: 892
Period size: 363 Copynumber: 2.0 Consensus size: 362
28266 TTGTAAAGTA
28276 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTT
* *
28341 ACTTTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
66 ACTCTAAATAGTTTGTCATTTTGTAACAACTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
* * * * * *
28406 AATTGTTACTCTCTGGGTTTTTAAATGTACTTCTTCATTTGTGAAACTTTTACGAGCTCTTTTAA
131 AATTGTTA-TCTCTGAGTTCTTAAACGAACTTCTTCACTTGTCAAACTTTTACGAGCTCTTTTAA
* * * ** * *
28471 AACTTTGGTTCCTTAAAGTGTTTAAGACGATCTGTTCCTTCGAGAAATTTTTCGAACATTCCATA
195 AACTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTCTCGAACATTCCATA
* * * *
28536 CTCAGTAAATTGCATCATTTGGTTTAAATAGTTTGTCAATTTGAAAACAAGTTTTAGTCTTTGAA
260 CTCAATAAATCGCATAATTTGGTCTAAATAGTTTGTCAATTTGAAAACAAGTTTTAGTCTTTGAA
* *
28601 TTAAAAACTTATTTACCTAATAATTATCTCTCTCTTGG
325 TTAAAAACTTAATTACCTAACAATTATCTCTCTCTTGG
* * * *
28639 TTCAAGGACGATCCATTCCTTCGAGAAAATTTT-TGACCATTCCATGCTCGGGAAATCGTATCAT
1 TTCAA-GACGATCCATTCCTTCGAG-AAATTTTCTGAACATACCATGCTCAGGAAATCGCATCAT
* ** * * *
28703 TT-CGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCA
64 TTAC-TCTAAATAGTTTGTCATTTTGT-AACAACTTTTAATCTTTGAATTAAAAACTTATTTACA
* ** *
28767 TGAGAATTGTT-TCTCTTAGTTCTTGGACGAAC-T-TTCGAACTTGTCAAACTTTTACGAGTTCT
127 TGAGAATTGTTATCTCTGAGTTCTTAAACGAACTTCTTC--ACTTGTCAAACTTTTACGAGCTCT
* ** * *
28829 TTTATAACTTTAGTTCCTTAAAGTATTCAAGTTGATCCATTCTTTCAAGCAATATTCT-GAACAT
190 TTTAAAACTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAAT-TTCTCGAACAT
* * * * * *
28893 TCCATACTCAATAAATCGTATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTC
254 TCCATACTCAATAAATCGCATAATTTGGTCTAAATAGTTTGTCAATTTGAAAACAAGTTTTAGTC
* * * *
28958 TTTGAATTAAAAACTTAATTACGTTACAATTGTTTCTCTCTTGG
319 TTTGAATTAAAAACTTAATTACCTAACAATTATCTCTCTCTTGG
29002 TT
1 TT
29004 TTTGCACAAA
Statistics
Matches: 308, Mismatches: 50, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
361 3 0.01
362 1 0.00
363 184 0.60
364 71 0.23
365 49 0.16
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (362 bp):
TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCATGCTCAGGAAATCGCATCATTT
ACTCTAAATAGTTTGTCATTTTGTAACAACTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
AATTGTTATCTCTGAGTTCTTAAACGAACTTCTTCACTTGTCAAACTTTTACGAGCTCTTTTAAA
ACTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTCTCGAACATTCCATAC
TCAATAAATCGCATAATTTGGTCTAAATAGTTTGTCAATTTGAAAACAAGTTTTAGTCTTTGAAT
TAAAAACTTAATTACCTAACAATTATCTCTCTCTTGG
Found at i:29168 original size:579 final size:578
Alignment explanation
Indices: 28061--29188 Score: 1359
Period size: 579 Copynumber: 1.9 Consensus size: 578
28051 CCTTAAAGTA
* * *
28061 TTCAAGACAATCCATTCCTTTGAGCAATTTTCCGAACATTTCATGCTCGAGAAATCACATAATTT
1 TTCAAGACAATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGAGAAATCACATAATTT
* * *
28126 TGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTATTTACTTGA
66 CGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAAATAAAAACTTATTTACATGA
* *
28191 GAATTGTTTCTCTCTTGGTTTTGCACGAACTTCAAAACATGTCAAACTTTTATGAGTTCTTTTAT
131 GAATTGTTTCTCTCTTAGTTTTGCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTAT
* * * * *
28256 AACTTCGGTTTTGTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCATG
196 AACTTCAGTTCTGTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATATTCTGAACATACCATA
* * *
28321 CTCAGGAAATCGCATCATTTACTTTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTGAAT
261 CTCAAGAAATCGCATAATTTACTCTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTGAAT
* * *** *** * * *
28386 TAAAAACTTATTTACATGAGAATTGTTACTCTCTGGGTTTTTAAATGTACTTCTTCATTTGTGAA
326 TAAAAACTTAATTACATGACAATTGTTACTCTCTGGGTTTTTAAACAAACTTCCAAACTAGTCAA
* * * * * * ***
28451 ACTTTTACGAGCTCTTTTAAAACTTTGGTTCCTTAAAGTGTTTAAGACGATCTGTTCCTTCGAGA
391 ACTTTTACGAGCTCCTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCTTCGAGA
* * *
28516 AATTTTTCGAACATTCCATACTCAGTAAATTGCATCATTTGGTTTAAATAGTTTGTCAATTTGAA
456 AATTTTTCGAACATTCCATACTCAGTAAATCGCATCATTTGGTCTAAATAGTTTATCAATTTGAA
*
28581 AACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCTAATAATTATCTCTCTCTTGG
521 AACAAGTTTTAGTCTTTGAAATAAAAACTTATTTACCTAATAATTATCTCTCTCTTGG
* * * * ** *
28639 TTCAAGGACGATCCATTCCTTCGAGAAAATTTT-TGACCATTCCATGCTCGGGAAATCGTATCAT
1 TTCAA-GACAATCCATTCCTTCGAG-AAATTTTCCGAACATTCCATGCTCGAGAAATCACATAAT
* * * * * *
28703 TTCGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCAT
64 TTCGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAAATAAAAACTTATTTACAT
* * *
28768 GAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTT
129 GAGAATTGTTTCTCTCTTAGTT-TTGCACGAAC-TTCAAAACATGTCAAACTTTTACGAGTTCTT
* ** * * *
28830 TTATAACTTTAGTTCCT-TAAAGTATTCAAGTTGATCCATTCTTTCAAGCAATATTCTGAACATT
192 TTATAACTTCAGTT-CTGTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATATTCTGAACATA
* * ** * * **
28894 CCATACTCAATAAATCGTATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCT
256 CCATACTCAAGAAATCGCATAATTTACTCTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCT
* * * * **
28959 TTGAATTAAAAACTTAATTACGTTACAATTGTTTCTCTCTTGGTTTTTGCACAAACTTCCAAACT
320 TTGAATTAAAAACTTAATTACATGACAATTGTTACTCTCTGGGTTTTTAAACAAACTTCCAAACT
* * * *
29024 AGTCCAACTTTTACGAGTTCCTTCACAGCTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCT
385 AGTCAAACTTTTACGAGCTCCTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCT
* * * * *
29089 TTGAGCAATTTTTCGGACATTTCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTATCA
450 TCGAGAAATTTTTCGAACATTCCATACTC-AGTAAATCGCATCATTTGGTCTAAATAGTTTATCA
* * *
29153 TTTTGTAAACAAGTTTTCGTCTTTGAAATAAAAACT
514 ATTTGAAAACAAGTTTTAGTCTTTGAAATAAAAACT
29189 CACTTACGTG
Statistics
Matches: 455, Mismatches: 88, Indels: 13
0.82 0.16 0.02
Matches are distributed among these distances:
577 9 0.02
578 131 0.29
579 307 0.67
580 8 0.02
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (578 bp):
TTCAAGACAATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGAGAAATCACATAATTT
CGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAAATAAAAACTTATTTACATGA
GAATTGTTTCTCTCTTAGTTTTGCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTAT
AACTTCAGTTCTGTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATATTCTGAACATACCATA
CTCAAGAAATCGCATAATTTACTCTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTGAAT
TAAAAACTTAATTACATGACAATTGTTACTCTCTGGGTTTTTAAACAAACTTCCAAACTAGTCAA
ACTTTTACGAGCTCCTTCAAAACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCTTCGAGA
AATTTTTCGAACATTCCATACTCAGTAAATCGCATCATTTGGTCTAAATAGTTTATCAATTTGAA
AACAAGTTTTAGTCTTTGAAATAAAAACTTATTTACCTAATAATTATCTCTCTCTTGG
Found at i:29710 original size:214 final size:214
Alignment explanation
Indices: 28639--34204 Score: 5319
Period size: 216 Copynumber: 26.0 Consensus size: 214
28629 TCTCTCTTGG
* * * *
28639 TTCAAGGACGATCCATTCCTTCGAGAAAATTTTTGACCATTCCATGCTCGGGAAATCGTATCATT
1 TTCAA-GACGATCCATTCCTTCGAG-AAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATT
* * * * * *
28704 TCGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* *
28769 AGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
28832 ATAACTTTAGTTCCTTAAAGTA
194 ATAAC-TTCGGTCCTTAAAGTA
** * * * * * ** * *
28854 TTCAAGTTGATCCATTCTTTCAAGCAATATTCTGAACATTCCATACTCAATAAATCGTATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * *
28919 GGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTTA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * * * *
28984 CAATTGTTTCTCTCTTGGTTTTTGCACAAACTTCCAAACTAGTCCAACTTTTACGAGTTCCTTCA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
29049 CAGCTTCGGTTCCTTAAAGTA
195 TAACTTCGG-TCCTTAAAGTA
* * * * * *
29070 TTCAAGACAATCCACTCCTTTGAGCAATTTTTCGGACATTTCATGCTC-GAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAG-AAATTTTCGAACATTCCATGCTCAG-GAAATCGCATCATT
* * * * * *
29134 TGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTCGTCTTTGAAATAAAAACTCACTTACGTG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* *
29199 AGAATTGTTTCTCTCTTGGTT-TTGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * **
29263 ATAATTTTGGTTTTGTAAAGTA
194 ATAACTTCGGTCCT-TAAAGTA
* * *
29285 TTCAAGACGATCCGTTCCTTCGAGAAATTTTCTGAAAATACCATGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * ** * *
29350 AGTTTAAATAGTTTTTCATTTTGT-AGCAAGTTTTAAT-TTTGAATTAAAAACTGATTTACAAGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* ** * * * * * * * *
29413 GAATTGCTTCTCTCTTGGTTCTCAGATGTAC-TCTGCATTTGTGAATCTTTTACGAGCTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
29477 AAACTTCGGTTCCTTAAAGTG
195 TAACTTCGG-TCCTTAAAGTA
* * * *
29498 TTTAAGACGATCCATTCCTTCGAGAAATTTTCGAACATTCCTTACTCAGTAAATCGCATCATTTG
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTG
* * * * * *
29563 GTTTAAATAGTTTGTCAATCTGTAAACAAGTTTTAGTCTTTGAATTTAAAACTTATTTACCTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
* * * *
29628 AATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTTTAC
131 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
29693 GACATCGGTACTTAAAGTT
196 AACTTCGGTCCTTAAAGTA
* * * *
29712 TTCAAGATGATCCATTCCTTCGAGAAATTTTGTGACCATTCCATGCTCGGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCAGGAAATCGCATCATTT
* * ** * * *
29777 GGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTAATTTTTGAATTATAAACTTATTTGCATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* *
29842 GAATTGTTTC-C-CTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
*
29905 TAACTTCGGTTCCCTAAAGTA
195 TAACTTCGG-TCCTTAAAGTA
* * * * *
29926 TTCAAG-CTGATCCATT-CTTACGAGCAATATTTT-AAACATTCTATACTCAGGAAATCGTATAA
1 TTCAAGAC-GATCCATTCCTT-CGAG-AA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCA
* * * * * * * *
29988 TTTGCTCAAAAAATTTTGTTATTTTGTAAACAAGTTTTGGTATTTGAATTAAAAACTTAATTACG
62 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACA
* * * * * * *
30053 TTAGAATTCTTTCTCTATTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACAAGTTCTT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* *
30118 TCACAACTTCGGTTCCTTAAAGTA
192 TTATAACTTCGG-TCCTTAAAGTA
* * * * * * * *
30142 TTCAAGAAGATCAATTCCTTTGAGTAATTTTTTGAACATTCCCTGCTCAGGAAATAGCATAATTT
1 TTCAAGACGATCCATTCCTTCGAG-AAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * *
30207 GGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* ** *
30272 GAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTATGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
30335 TAACTTCGGTTCCTTAAAGTA
195 TAACTTCGG-TCCTTAAAGTA
* * * * * * * * *
30356 TTCAAGATGATCTATTCTTTCGAGCAAA-ATTCTAAACATTCTATACTCAGGAAATCGAATAATT
1 TTCAAGACGATCCATTCCTTCGAG-AAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATT
* * * * *
30420 TGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA-TGTAATTACGT
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACAT
* * * * * * *
30484 TAGAATTCTTTCTCTTTTGGTTCTTGCACGAACTTCCAAACTAGTCAAACATTTACGAGTTAC-T
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-CTT
* *
30548 TCACAACTTCGGTCCTTAAAGTA
192 TTATAACTTCGGTCCTTAAAGTA
* * * * * * *
30571 TTCAAGTCAATCCATTCCTTTGAGCAATTTTCCCAACATTTCATGCTC-GAGAAATTGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCAG-GAAATCGCATCATT
** * *
30635 TGGTCTAAATAGTTTACCATTTTGTGAAA-AAGTTTTGGTCTTTGAGA-TAAAAACTTACTTACG
64 TGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACA
* ** ** * *
30698 TGAGAATTGTTTCTATCTTGGTTC-TACACGAACTT-C-AA--AATCAAACTTTAACGAGTTCCT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
**
30758 TTATAACTTCGGTTTTGTAAAGTA
192 TTATAACTTCGGTCCT-TAAAGTA
* * * *
30782 TTCAAGATGATCCGTTCCTTCGAGAAATTTTTTGAACATACCATGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATTT
* * ** *
30847 AGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTGAATTAAAAACTTCTTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * * * * * *
30911 GAATTGTGTCTCTCTTGGTTCTTAGATGTACTTCTGCATTTATGAAACTTTTGCGAGCTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * *
30976 AAACTCCGGTTCCTTAAAGTG
195 TAACTTCGG-TCCTTAAAGTA
* * * * *
30997 TTCAAGACGATCCATTCCTTCGTGAAATTTTCCGAACATTCAATACTTAGTAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * * * *
31062 TGTTTAAATAGTTTGTTAATTTGTAAACAAGTTTTAGTCTTTCAATTAAAAACTTATTTACCTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * *
31127 GAATTGTCTCTCTCTTGATTCATGGACGAAATTCTGCAA-TAGTCAAACTTTTACGA---C---T
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG-AACTTGTCAAACTTTTACGAGTTCTTTT
* * *
31185 -T--C--AGGTACTTAAAGTT
194 ATAACTTCGGTCCTTAAAGTA
* * * *
31201 TTCAGGACGATCCATTCCTTCGAGAAATTTTCTAAACATTCCATGCTCGGGAAATCGCATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * * * **
31266 GGTCTAAATAGTTTGTCATTTTTTAAACTACTTTTGGTTTTTGAATTATAAACTTCTTCGCATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
*
31331 GAATTG-TT-TCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
**
31394 TAACTTCAATTCCTTAAAGTA
195 TAACTTC-GGTCCTTAAAGTA
* * * * * *
31415 TTCAAGATGATCCATTCTTTCGAGCAATATTTT-GAACATTCCATACTCAGAAAATCACATAATT
1 TTCAAGACGATCCATTCCTTCGAG-AA-ATTTTCGAACATTCCATGCTCAGGAAATCGCATCATT
* * * * *
31479 TGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAATTACGTT
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* * * * * *
31544 AGAATTGTTTTTCTCTTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTC
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
*
31609 ACAACTTCGGTTCCTTAAAGTA
194 ATAACTTCGG-TCCTTAAAGTA
* * * * *
31631 TTTAAGACAATCCATTCCTTTGAGCAATTTTTCGAACATTTCATGCTC-GAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAG-AAATTTTCGAACATTCCATGCTCAG-GAAATCGCATCATT
** * * *
31695 TGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTACTTAAATG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* * ** * * * *
31760 AGAATTGTTTCTCTCTTGGTTC-TGCACTAACTTCAAAACATGTCAAACTTTTACAAATTCTTAT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
**
31824 ATAACTTCGGTTTTGTAAAGTA
194 ATAACTTCGGTCCT-TAAAGTA
* * * *
31846 TTCAAGACAATCCATTCCTTCGATAAATTTTCTGAACATACCATGCGCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * **
31911 AGTTTAAATAGTTTGTCATTTTG-GAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * * * * * *
31975 GAATTGTTTCACTCTTGGTTCTTCGATGTACGTCTGCATTTGTGAAACCTTTACGAGCTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
32040 AAACTTCGGTTCCTTAAAGTG
195 TAACTTCGG-TCCTTAAAGTA
* * * * * * * **
32061 TTTAAGATGATCCGTTCCTTAGAGAAATTTTCCAAACATTGCATACTCAATAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTT-CGAACATTCCATGCTCAGGAAATCGCATCATTT
* * * ** *
32126 GGTTTAAATAGTTTGTTAATTTGTAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACCTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * *
32191 GAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAGCTTTTACGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
** * * *
32256 CGACTATGGGTACTTAAAGTT
195 TAACT-TCGGTCCTTAAAGTA
* * * *
32277 TTCAGGATGATCCATTCCTTCGAGAAATTTTCTGAATATTCCATGCTCGGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * * *
32342 GGTCTAAATAGTTAGTCATTTTTTAAA-AACCTTTTGGTTTTTGAA-TAATAAAGTTATTTGCAT
65 GGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAA-AAACTTATTTACAT
* * * *
32405 GAGAGTTG-TT-TCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGTGTTCTTT
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
32468 TATAACTTCGGTTCCTTAAAGTA
193 TATAACTTCGG-TCCTTAAAGTA
* * * * * * *
32491 TTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGTATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * * ** *
32556 GGTCTAAATATTTTGTTATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACATAATTATGTTA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * *
32621 GAATTGTTACTCTCTTGGTTCTTGCACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCCTTCA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
32686 CAACTTCGATTCCTTAAAGTA
195 TAACTTCG-GTCCTTAAAGTA
** * * * *
32707 TTCAAGATAATCC-TTTCTTGTGAGCAAATTTCCGAGCATGT-CATGCTC-GAGAAATCGCATCA
1 TTCAAGACGATCCATTCCTT-CGAG-AAATTTTCGAACAT-TCCATGCTCAG-GAAATCGCATCA
** * * * *
32769 TTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGCTCTTTGAAATAAAAACTTACTTACG
62 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACA
* * ** * * *
32834 TGAGAGTTGTTTCTCTCTTGGTTC-TGCACGAACTTCAAAACATGTCCAACTTTTACGAATTCTT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
**
32898 TTATAACTTCGGTTTTGTAAAGTA
192 TTATAACTTCGGTCCT-TAAAGTA
* * *
32922 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCATGCTTAGGAAATCGTATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
** * **
32987 ATTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * * * * *
33050 GAATTGTGTCTCTCTCGGTTCTTAGATGTACTTCTGCATTTGTGAAACTTTTACGAGGTCTTTT-
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
*
33114 TAAACTTCGGTTCCTTAAAGTC
195 T-AACTTCGG-TCCTTAAAGTA
* * * * *
33136 TTTAAGACGATCCGA-TCCTCCAAGAAATTTTTCGAACATTCCATACTCAGTAAATCGCATCATT
1 TTCAAGACGATCC-ATTCCTTCGAGAAA-TTTTCGAACATTCCATGCTCAGGAAATCGCATCATT
* * * *
33200 TGGTTTAAATAGTTTGTCAATTTT-TGAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACCT
64 TGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACAT
* * * * * *
33264 GAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTTCGCACTTGTCAAGCTTTTACGACTTCTTT
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
** * * *
33329 TACGACTTTAGGTACTTAAAGTT
193 TATAAC-TTCGGTCCTTAAAGTA
* * * *
33352 TTTAGGACGATCCATTCCTTCGAGAAATTTTCTGGATATTCCATGCTC-GAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAG-GAAATCGCATCATT
* * * * * *
33416 TGGTCTAAATAGTTTGTCATTTTTTAACCAACTTTTGGCCTTTGAATTATAAACTTATTTGCATG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* **
33481 AGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
33544 ATAACTTCGGTTCCTTAAAGTA
194 ATAACTTCGG-TCCTTAAAGTA
** * * * * * *
33566 TTCAAGATTATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCACATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * * * * * * *
33631 GGTCTAAATATTTTGTTATTCTGTAATCAAGTTTTGGTCGTTGAATTAAAAACTTAATTACGTTA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * *
33696 GAATTGTTTTTCTCTTGGTTTTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * *
33761 CAACTTCAGTTCCTTAAAGTT
195 TAACTTC-GGTCCTTAAAGTA
* * * * * *
33782 TTTAAGACAATCCATTCCATT-GAGCAATTTTCCTGGACATTTCATGCTC-GAGAAATCGCATGA
1 TTCAAGACGATCCATTCC-TTCGAGAAATTTT-C-GAACATTCCATGCTCAG-GAAATCGCATCA
** * * * * *
33845 TTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGATCTTTGAAATAAAAAATTACTTACG
62 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACA
* ** * *
33910 TGAGAATTGTTTCTCTCTTGGTTC--GCACGAACTTCAAAACATGTCAAACTTTTACGAATTCTT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
**
33973 TTATAACTTCGGTTTTGTAAAGTA
192 TTATAACTTCGGTCCT-TAAAGTA
* * * * * * *
33997 TTCAAGACGATCCGTTTCTTCGAGAAATTTTCTGAACATACCATGCTTAGTAAATCGTATTATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTT
* * **
34062 AGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGA
* * * * * * * * *
34125 GAATTGTGTT-TCTCTTGGTTCTTAGATGTACGTCTGCATTTGTGAAACTTTTACGAGATCTTTT
130 GAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
34189 CA-AACTTCGGTTCCTT
194 -ATAACTTCGG-TCCTT
34205 CGAGAAATTT
Statistics
Matches: 4351, Mismatches: 872, Indels: 257
0.79 0.16 0.05
Matches are distributed among these distances:
201 2 0.00
202 37 0.01
203 2 0.00
204 119 0.03
205 3 0.00
207 1 0.00
208 1 0.00
209 5 0.00
210 79 0.02
211 83 0.02
212 94 0.02
213 250 0.06
214 1238 0.28
215 965 0.22
216 1347 0.31
217 125 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
TTCAAGACGATCCATTCCTTCGAGAAATTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTG
GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTCCTTAAAGTA
Found at i:30272 original size:430 final size:431
Alignment explanation
Indices: 28639--39704 Score: 10150
Period size: 430 Copynumber: 25.8 Consensus size: 431
28629 TCTCTCTTGG
* * * * *
28639 TTCAAGGAC-GATCCATTCCTTCGAG-AAAATTTTTGACCATTCCATGCTCGGGAAATCGTATCA
1 TTCAA-GACTGATCCATTCCTTCGAGCAATA-TTTTGAACATTCCATACTCAGGAAATCGCATCA
* * * * * * *
28702 TTTCGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCA
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
28767 TGAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
** * * * *
28830 TTATAACTTTAGTTCCTTAAAGTATTCAAGTTGATCCATTCTTTCAAGCAATATTCTGAACATTC
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* ** * * * *
28895 CATACTCAATAAATCGTATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTT
259 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * * * * *
28960 TGAATTAAAAACTTAATTACGTTACAATTGTTTCTCTCTTGGTTTTTGCACAAACTTCCAAACTA
324 TGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * * *
29025 GTCCAACTTTTACGAGTTCCTTCACAGCTTCGGTTCCTTAAAGTA
387 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * *
29070 TTCAAGAC-AATCCACTCCTTTGAGCAAT-TTTTCGGACATTTCATGCTC-GAGAAATCGCATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT-GAACATTCCATACTCAG-GAAATCGCATCA
* * * * *
29132 TTTGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTCGTCTTTGAAATAAAAACTCACTTACG
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
*
29197 TGAGAATTGTTTCTCTCTTGGTT-TTGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * * *
29261 TTATAATTTTGGTT-TTGTAAAGTATTCAAGACGATCCGTTCCTTCGAGAAATTTTCTGAAAATA
194 TTATAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * * **
29325 CCATGCTCAGGAAATCGCATCATTTAGTTTAAATAGTTTTTCATTTTGT-AGCAAGTTTTAAT-T
258 CCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * ** * * * * *
29388 TTGAATTAAAAACTGATTTACAAGAGAATTGCTTCTCTCTTGGTTCTCAGATGTAC-TCTGCATT
323 TTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * *
29452 TGTGAATCTTTTACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTG
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
29498 TTTAAGAC-GATCCATTCCTTCGAG-AA-ATTTTCGAACATTCCTTACTCAGTAAATCGCATCAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT-GAACATTCCATACTCAGGAAATCGCATCAT
* * * * * *
29560 TTGGTTTAAATAGTTTGTCAATCTGTAAACAAGTTTTAGTCTTTGAATTTAAAACTTATTTACCT
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * **
29625 GAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAACTTTTACGAGTTCTTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
** * * * * * *
29690 TACGACATCGG-TACTTAAAGTTTTCAAGATGATCCATTCCTTCGAGAAATTTTGTGACCATTCC
195 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * ** *
29754 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTAATTTTT
260 ATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * *
29819 GAATTATAAACTTATTTGCATGAGAATTGTTTCCCTTAGTTCTTGGATGAACTTCCGAACTTGTC
325 GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
29884 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCCTAAAGTA
390 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * *
29926 TTCAAG-CTGATCCATT-CTTACGAGCAATATTTTAAACATTCTATACTCAGGAAATCGTATAAT
1 TTCAAGACTGATCCATTCCTT-CGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCAT
* * * * * * *
29989 TTGCTCAAAAAATTTTGTTATTTTGTAAACAAGTTTTGGTATTTGAATTAAAAACTTAATTACGT
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
30054 TAGAATTCTTTCTCTATTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACAAGTTCTTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * *
30119 CACAACTTCGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTTGAGTAATTTTTTGAACATTCC
195 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * *
30184 CTGCTCAGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTT
260 ATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * **
30249 GAATTATAAACTTATTTGCATGAGAATTGTTTCTCTTAGTTCTTGGACGAACTTTTGAACTTGTC
325 GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
30314 AAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
390 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * * *
30356 TTCAAGA-TGATCTATTCTTTCGAGCAAAATTCTAAACATTCTATACTCAGGAAATCGAATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * *
30420 TGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA-TGTAATTACGT
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACGT
* * * * * *
30484 TAGAATTCTTTCTCTTTTGGTTCTTGCACGAACTTCCAAACTAGTCAAACATTTACGAGTTAC-T
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT-CTT
* * * * **
30548 TCACAACTTCGG-TCCTTAAAGTATTCAAG-TCAATCCATTCCTTTGAGCAATTTTCCCAACATT
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGAT-GATCCATTCCTTCGAGCAATTTTCTGAACATT
* * **
30611 TCATGCTC-GAGAAATTGCATCATTTGGTCTAAATAGTTTACCATTTTGTGAAA-AAGTTTTGGT
258 CCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGT
* * **
30674 CTTTGAGA-TAAAAACTTACTTACGTGAGAATTGTTTCTATCTTGGTTC-TACACGAACTT-C-A
321 CTTTGA-ATTAAAAACTTATTTACATGAGAATTGTTTC--TCTTGGTTCTTGGACGAACTTCCGA
** * * *
30735 A--AATCAAACTTTAACGAGTTCCTTTATAACTTCGGTT-TTGTAAAGTA
383 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTA
* * * * *
30782 TTCAAGA-TGATCCGTTCCTTCGAGAAATTTTTTGAACATACCATGCTCAGGAAATCGCATCATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * ** * *
30846 TAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTGAATTAAAAACTTCTTTACATG
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *** * * * * *
30910 AGAATTGTGTCTCTCTTGGTTCTTAGATGTACTTCTGCATTTATGAAACTTTTGCGAGCTCTTTT
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * *
30975 AAAACTCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGTGAAATTTTCCGAACATTCAA
196 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * * * * * *
31040 TACTTAGTAAATCGCATCATTTTGTTTAAATAGTTTGTTAATTTGTAAACAAGTTTTAGTCTTTC
261 TGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* * * * * *
31105 AATTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGATTCATGGACGAAATTCTGCAA-TAG
326 AATTAAAAACTTATTTACATGAGAATTGT-T-TCTCTTGGTTCTTGGACGAACTTCCG-AACTTG
* * *
31169 TCAAACTTTTACGA---C---T-T--C--AGG-TACTTAAAGTT
388 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * *
31201 TTCAGGAC-GATCCATTCCTTCGAGAAAT-TTTCTAAACATTCCATGCTCGGGAAATCGCATAAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTT-TGAACATTCCATACTCAGGAAATCGCATCAT
* * * * * * ** *
31264 TTGGTCTAAATAGTTTGTCATTTTTTAAACTACTTTTGGTTTTTGAATTATAAACTTCTTCGCAT
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* *
31329 GAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
** *
31392 TATAACTTCAATTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTT-TGAACATTC
195 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TTTCTGAACATTC
* * * * * *
31456 CATACTCAGAAAATCACATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTT
259 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * *
31521 TGAATTAAAAACTTAATTACGTTAGAATTGTTTTTCTCTTGGTTCTTGCACGAACTTCCAAACTA
324 TGAATTAAAAACTTATTTACATGAGAATTG--TTTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * *
31586 GTCAAACTTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTA
387 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
31631 TTTAAGAC-AATCCATTCCTTTGAGCAAT-TTTTCGAACATTTCATGCTC-GAGAAATCGCATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT-GAACATTCCATACTCAG-GAAATCGCATCA
** * * **
31693 TTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGGTCTTTGAAATAAAAACTTACTTAAA
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * *
31758 TGAGAATTGTTTCTCTCTTGGTTC-TGCACTAACTTCAAAACATGTCAAACTTTTACAAATTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * ** ** *
31822 ATATAACTTCGGTT-TTGTAAAGTATTCAAGACAATCCATTCCTTCGATAAATTTTCTGAACATA
194 TTATAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * * **
31886 CCATGCGCAGGAAATCGCATCATTTAGTTTAAATAGTTTGTCATTTTG-GAACAAGTTTTAATCT
258 CCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * * *
31950 TTGAATTAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTCGATGTACGTCTGCATT
323 TTGAATTAAAAACTTATTTACATGAGAATTGTTT--CTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * *
32015 TGTGAAACCTTTACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTG
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * **
32061 TTTAAGA-TGATCCGTTCCTTAGAG-AA-ATTTTCCAAACATTGCATACTCAATAAATCGCATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT--GAACATTCCATACTCAGGAAATCGCATCA
* * * ** *
32123 TTTGGTTTAAATAGTTTGTTAATTTGTAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACC
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * ** *
32188 TGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCAAGCTTTTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
** * * * * * *
32253 TTACGACTAT-GGGTACTTAAAGTTTTCAGGATGATCCATTCCTTCGAGAAATTTTCTGAATATT
194 TTATAACT-TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * * *
32317 CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTAGTCATTTTTTAAA-AACCTTTTGGTT
258 CCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTC
* * * * *
32381 TTTGAA-TAATAAAGTTATTTGCATGAGAGTTGTTTCTCTTAGTTCTTGGACGAACTTTCGAACT
322 TTTGAATTAA-AAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACT
*
32445 TGTCAAACTTTTACGTGTTCTTTTATAACTTCGGTTCCTTAAAGTA
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * *
32491 TTCAAGA-TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGTATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * * * * *
32555 TGGTCTAAATATTTTGTTATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACATAATTATGTT
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
32620 AGAATTGTTACTCTCTTGGTTCTTGCACGAACTTTCAAACTAGTCAAACTTTTACGAGTTCCTTC
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * *
32685 ACAACTTCGATTCCTTAAAGTATTCAAGATAATCC-TTTCTTGTGAGCAAATTTCCGAGCATGT-
196 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT-CGAGCAATTTTCTGAACAT-TC
** *
32748 CATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGCTCT
259 CATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * ** *
32812 TTGAAATAAAAACTTACTTACGTGAGAGTTGTTTCTCTCTTGGTTC-TGCACGAACTTCAAAACA
323 TTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT
* * *
32876 TGTCCAACTTTTACGAATTCTTTTATAACTTCGGTT-TTGTAAAGTA
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTA
* * * * *
32922 TTCAAGAC-GATCCATTCCTTCGAGAAAT-TTTCTGAACATACCATGCTTAGGAAATCGTATCAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTT-TGAACATTCCATACTCAGGAAATCGCATCAT
** * ** *
32985 TTATTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAAT-TTTGAATTAAAAACTTATTTACAT
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *** * * *
33048 GAGAATTGTGTCTCTCTCGGTTCTTAGATGTACTTCTGCATTTGTGAAACTTTTACGAGGTCTTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * *
33113 T-TAAACTTCGGTTCCTTAAAGTCTTTAAGACGATCCGA-TCCTCCAAGAAATTTT-TCGAACAT
195 TAT-AACTTCGGTTCCTTAAAGTATTCAAGATGATCC-ATTCCTTCGAGCAATTTTCT-GAACAT
* * * * *
33175 TCCATACTCAGTAAATCGCATCATTTGGTTTAAATAGTTTGTCAATTTT-TGAACAAGTTTTAGT
257 TCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGT
* * * *
33239 CTTTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTTCGCA
321 CTTTGAATTAAAAACTTATTTACATGAGAATTGT-T-TCTCTTGGTTCTTGGACGAACTTCCGAA
* * ** * * *
33304 CTTGTCAAGCTTTTACGACTTCTTTTACGACTTTAGG-TACTTAAAGTT
384 CTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTA
* * * * * *
33352 TTTAGGAC-GATCCATTCCTTCGAGAAAT-TTTCTGGATATTCCATGCTC-GAGAAATCGCATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTT-TGAACATTCCATACTCAG-GAAATCGCATCA
* * * * * * *
33414 TTTGGTCTAAATAGTTTGTCATTTTTTAACCAACTTTTGGCCTTTGAATTATAAACTTATTTGCA
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* ***
33479 TGAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * *
33542 TTATAACTTCGGTTCCTTAAAGTATTCAAGATTATCCATTCTTTCGAGCAATATTCTGAACATTC
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * * * * * * *
33607 CATACTCAGGAAATCACATAATTTGGTCTAAATATTTTGTTATTCTGTAATCAAGTTTTGGTCGT
259 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * * *
33672 TGAATTAAAAACTTAATTACGTTAGAATTGTTTTTCTCTTGGTTTTTGCACGAACTTCCAAACTA
324 TGAATTAAAAACTTATTTACATGAGAATTG--TTTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * * *
33737 GTCAAACTTTTACGAGTTCCTTCACAACTTCAGTTCCTTAAAGTT
387 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
33782 TTTAAGAC-AATCCATTCCATT-GAGCAAT-TTTCCTGGACATTTCATGCTC-GAGAAATCGCAT
1 TTCAAGACTGATCCATTCC-TTCGAGCAATATTT--TGAACATTCCATACTCAG-GAAATCGCAT
* ** * * * *
33843 GATTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGATCTTTGAAATAAAAAATTACTTA
62 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * *
33908 CGTGAGAATTGTTTCTCTCTTGGTTC--GCACGAACTTCAAAACATGTCAAACTTTTACGAATTC
127 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTC
* * * * *
33971 TTTTATAACTTCGGTT-TTGTAAAGTATTCAAGACGATCCGTTTCTTCGAGAAATTTTCTGAACA
192 TTTTATAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACA
* * * * * * * **
34035 TACCATGCTTAGTAAATCGTATTATTTAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAAT
256 TTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * *
34099 -TTTGAATTAAAAACTTATTTACATGAGAATTGTGTTTCTCTTGGTTCTTAGATGTACGTCTGCA
321 CTTTGAATTAAAAACTTATTTACATGAGAA-T-TGTTTCTCTTGGTTCTTGGACGAACTTCCGAA
* * *
34163 TTTGTGAAACTTTTACGAGATCTTTTCA-AACTTCGGTTCC--------
384 CTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTA
* * **
34203 TTC--GA--GA--AATT--TT----C--TA-----AACATTGCATACTCAATAAATCGCATCATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * * **
34249 TGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTAGTCATTGAATTAAAAACTTATTTACCAG
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * ** ** * *
34314 AGAATTATCTCTCTCTTGCTTCAAGGACGAACTTCCGCACTTGTTAAGCTTTTACGAGTTCTTTT
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
** * * ** * * * * * * *
34379 ACGACTTTGGGTATTTAAAGTTTTCAGGACT-ATCTATTCCTTC-ATGAAAATTTCAGAATATTC
196 ATAACTTCGGTTCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGA-GCAATTTTCTGAACATTC
* * * * * *
34442 CATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTAGTCTTTTTTTAAAAAACTTTTGGTTT
259 CATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * *
34506 TTGAATTATAAACTTATTTGCATGAGAATTGTTTCTCTTTGTTATTGGACGAACTTTCGAACTTT
323 TTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* *
34571 TCAAACTTGTACGAGTTCTTTAATAACTTCGGTTCCTTAAAGTA
388 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
34615 TTCAAGA-TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * * * * *
34679 TGGTCTAAATATTTTGTTATTCTGTAATCAAGTTTTGGTCGTTGAATTAAAAACTTAATTACGTT
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
34744 AGGATTGTTTTTCTCTTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTC
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
* ** ** *
34809 ACAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCATT-GAGCAATTTTCCAAGACATTT
196 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCC-TTCGAGCAATTTTCTGA-ACATTC
* ** *
34873 CATGCTC-GAGAAATCGCATGATTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGATCT
259 CATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * * ** *
34937 TTGAAATAAAAAATTACTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGCACGAACTTCAAAACA
323 TTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT
*
35001 TGTCAAACTTTTACGAATTCTTTTATAACTTCGGTT--TTGAAAAGTA
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT--AAAGTA
* * * *
35047 TTCAAGACT-ATCCATTCCTTCGAGAAAT-TTTCTAAACATACCATGCTCAGGAAATCGCATCAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTT-TGAACATTCCATACTCAGGAAATCGCATCAT
* * ** *
35110 TTAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCTTTGAATTAAAAACTTATTTCCGT
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
35174 GAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAATCATGCCAAACTCTTACGAGTTCTTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * *
35239 TATAACTTCGGTCCCTTAAAATATTCAAGATGATCCATTCTTTCTACCAATATTCTGAA-ATTCC
195 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * **
35303 ATACTCGGGAAATCGCATAATTTGGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTT
260 ATGCTCAGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * *
35367 TGAATTAAAAACTTGTTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACTT-CTACATT
324 TGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGA-ACT
* * * * *
35431 TGTGAAACTTTTACGAGCTCTTTTAAAACTTCAGTTCCTTAAAGTG
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
35477 TTTAAGAC-GATCCGTTCCTTCGA-TAA-ATTTTCCGAACATTCCATACTCAGTAAATCACATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT--GAACATTCCATACTCAGGAAATCGCATCA
* * ** * * * *
35539 TTTGGTTTAAATAGTTTGTGAACTTGTAAACAAGTTTTAGCCTTTGAATAAAAAACTTATTTACC
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * ** * *
35604 TGAGAATTGTCTCTCTCTTGGTTCATGGACGATCTTCCGCACTTGTCAAACTATTACGAGCTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
** * * * * * ** *
35669 TTACGACTTCGGGTACTTAAAGTTTTCTAGACGATCCATTCCTTCGATAAATTTTCTGAACATTT
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * * * *
35734 CATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTT
259 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * *
35799 TTAATTATAAACTTATTTACATGAGAATTGTTTCTCTTAGTTATTAGACGAACTTCTGAACTTGT
324 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
*
35864 CAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
389 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
35907 TTCAAGA-TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * * *
35971 TGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTAATTACGTT
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * * *
36036 AGAATTGTTTCTCTCTTGGTTCTTGCACGAACTACCAAACTAGTCAAACTTTTACAAGGTCCTTC
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** * *
36101 ACAACATCGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTTGAGCAATTTT-TCGAACATTTC
196 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT-GAACATTCC
* * ** *
36165 GTGCTC-GAGAAATCGCATCATTTGCTCTAAATAGTTTACCATTTTGTAAACAAGTATTGGTCTT
260 ATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * ** *
36229 TGAAATAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGCACGAACTTCAAAACAT
324 TGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTT
* *
36293 GTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT-TTGTAAAGTA
387 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTA
* * * *
36338 TTCAAGAC-GATCCATTCCTTCGAGAAAT-TTTCTGAACATACCTTGCTCAGGAAATCGCATCAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTT-TGAACATTCCATACTCAGGAAATCGCATCAT
* * ** *
36401 TTAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCCTTGAATTAAAAACTTATTT-CTG
65 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC-G
* * * * *
36464 TGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAATCATGCCAAACTTTTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * * * *
36529 TTATAAATTCGGTCCCTTAAAATATTTAAGATGATCCATTCTTTCTACCAATATTCTGAAAATTC
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * * * * **
36594 CATACTCGGGAAATCGCATAATTTGGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCT
259 CATGCTCAGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * *
36658 TTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGATGTACTT-CTACAT
323 TTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGA-AC
* * * * *
36722 TTGTGAAACTTTAACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTG
385 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * ** * *
36769 TTTAAGAC-GATCCGTTCCTTC-AATAA-ATTTTCCGAACATTCCATACTCAGTAAATCACATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT--GAACATTCCATACTCAGGAAATCGCATCA
* * * * * * *
36831 TTTGGTTTAAATAGTTTGTGAATTTGTAAACAAGTTTTAGTCTTTGAATAAAAAACTTATTTGCC
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * ** *
36896 TGAGAATTGTCTCTCTCTTGGTTCATGGACGAATTTTCGCACTTGTCAAACTATTACGAGTTCTT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
** * * * ** * *
36961 TTACGACTTCGGATACTTAAAGTTTTCTGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTC
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * * * *
37026 CATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTT
259 CATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* ** * *
37091 TTAATTATTAACTTATTTACATGAGAATTGTTTCTCTTAGTTATTGGACGAACTTCCGAACTTGT
324 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* *
37156 CAAACTTTTACGTGTTCTTTTATAACTTCTGTTCCTTAAAGTA
389 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
37199 TTCAAGA-TGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * * * * *
37263 TGGTCTAAATATTTTGTTATTTTGTAACCAAGTTTTGGTCTTTGATTTAAAAACTTAATTACGTT
66 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
** * * * * *
37328 AGAATTGTTTCTCTCTTGGTTCTTCCACGAACTACCAAACTAGTCAAACTTTTACGAGGTCCTTC
131 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * ** * *
37393 ATAACTTCGATTCCTTATAGTATTCAAGACAATCCATTCCTTCGAG-AA-ATT-TG-ACATACCA
196 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * ** *
37454 TGCTCAGGAAATCGCATCATTTAGTTTAAATTGTTTGTCATTTTGT-AACAAGTTTTAATCATTG
261 TGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* * * *
37518 AATTAAAAACTTATTTCCGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCC-AATCATG
326 AATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAA-CTTG
* * *
37582 TCAAACTTCTACGAGTTCTTTTATAACTTCGGTCCCTTAAAATA
388 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * *
37626 TTCAAGA-TGATCCATTCTTTCTACCAATATTCTGAAAAATT-CATACTCGGGAAATCGCATAAT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTG-AACATTCCATACTCAGGAAATCGCATCAT
* * **
37689 TTGGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTACA
65 TTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC-
* * ** ** * *
37753 GATTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGATGTCCTTCCGTATTTGTG
128 G-----------------TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * * * * *
37818 AAACTTTTATGAGCTCTTTTAGAACTTTGGATCCTTAAAGTGTTTAATATGACCCATTCCTTCGA
176 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * * * *
37883 G-ATATTTTCCGAACATTCCATACTCAGTAATTCACATCATTTGGTTTAAATAGTTTGTCAATTT
241 GCA-ATTTTCTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
** * * *
37947 GTAAACAAGTTTTAATCGTTGAATTAAAAACTTGTTTACCTGAGAATTGTCTCTCTCTTGGTTCT
305 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT-T-TCTCTTGGTTCT
* * ** * * *
38012 TGGACGAACTGT-CGCACTTGTTAAACTTTTACGAGTTCTTACACAACTTCGGTTACTTAAAGTT
368 TGGACGAACT-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * ** * * *
38076 TTCAAGAC-GATCCATTTCATT-GAGTAAT-TTTCCAAAAATTCCATGCTC-GAGAAATCGTATC
1 TTCAAGACTGATCCA-TTCCTTCGAGCAATATTT-TGAACATTCCATACTCAG-GAAATCGCATC
* * * * * *
38137 ATTTGGCCTAAATAGTTTTTCTTTTTGTAAACAACTTCTGGTCTTTGAATTAAAAACTTATTTAT
63 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
** *
38202 GTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCT
128 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCT
* * * * * *
38265 TTTATAACTTCGATTCATTAAAATATTCAAGATGATCCATTCTTTCGAGCAATATTCTGAAAATT
193 TTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * * * * * * **
38330 CAATACTCGGGAAATCACATAATTTGGT-TAAAATATTTTGTCATTTCGTAAATAAGTTTTAATC
258 CCATGCTCAGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * *
38394 TTTGAATTAAAAACTTATTTTCATGAGAATTGTTTCTCTCTTGGTTCTTAGATGTACTTCCGCAT
322 TTTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAAC
** * * * * * * *
38459 TTGTGGAACTTTTATGTGCTCTTTTAGAACTTTGGATCCTTAAAGTG
385 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * *
38506 TTTAATA-TGACCCATTCCTTCGAG--ATATTTTCCGAACATTCCATACTCAGTAATTCACATCA
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTT--GAACATTCCATACTCAGGAAATCGCATCA
* * * * * * *
38568 TTTAGTTTAAATAGTTTGTCAATTTGTATACAAGTTTTAGTCGTTGAATTAAAAACTTATTTACC
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * **
38633 TGAGAATTGTCTCTCCCATGGTTCTTTGACGAACTTTCCCCACTTGTCAAACTTTTACGAGTTCT
129 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCT
* * * * * * * * *
38698 TTCACAACTTCGGTTACTTAAAGTTTTCAA-AGCGATCCATTTCATT-GAGTAATTTTCAGAAAA
193 TTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGATCCA-TTCCTTCGAGCAATTTTCTGAACA
* * * * *
38761 TTCCATGCTC-GAGAAATCGCATCATTTGGCCTAAA-ACTTTTTCTTTTTGTAAACAACTTTTGG
256 TTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* *
38824 TCTTTGAATTAAAAACTTATTTACATGAGAATAGTTTCTCTTGGTTCTTGGACGAACTT-CTAGA
320 TCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGA-A
* *
38888 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATA
384 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * * * *
38936 TTCTATA-TGATCCATTCTTTCGAGCAATATTCTAAAAATTCCATACTCGGGAAATCACATAATT
1 TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
* * ** * *
39000 TGGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTTCAT
66 TGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * *** * * * * *
39064 GAGAATTGTTTCTCTCTTGGTTCTTAGA-TACACTTCTGCATTTGTGAAACTTTTATGTGCTCTT
130 GAGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* * * * * ** * *
39128 TTAGAACTTTGGATCCTTAAAGTGTTTAATTTGACCCATTCCTTCGAG-ATATTTTCCGAACATT
194 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCA-ATTTTCTGAACATT
* ** * * * * * * *
39192 CCATACTCAATAATTCACATCATTTGGTTTAAATAGTTTGTCAATTTGTATACAAGTTTTAGTCG
258 CCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * * *
39257 TTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCCCTTGGTTCTTCGACGAACTTTCGCACT
323 TTGAATTAAAAACTTATTTACATGAGAATTGT-T-TCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * *
39322 TGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTACTTAAAGTT
386 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
39368 TTCAAGAC-GATCCATTTCATT-GAGTAAT-TTTCAGAAAATTCCATGCTC-GAGAAATCGCATC
1 TTCAAGACTGATCCA-TTCCTTCGAGCAATATTT-TGAACATTCCATACTCAG-GAAATCGCATC
* * * * * *
39429 ATTTGGCCTAAA-ACTTTTTCTTTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
63 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
39493 ATGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCT
128 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCT
* * * * * *
39556 TTTATAACTTCGGTTCCTTAAAATATTCAAGATGATCCATTCTTTTGAGAAATATTCTGAAAATT
193 TTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * * * * * * ** *
39621 TCATACTCGGGAAATCGCATAAGTTGGT-TAAAATATTTTGTCATTTTGTACAGAAGTTTTAATG
258 CCATGCTCAGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
39685 TTTGAATTAAAAACTTATTT
322 TTTGAATTAAAAACTTATTT
39705 TGATACGAGT
Statistics
Matches: 8635, Mismatches: 1713, Indels: 576
0.79 0.16 0.05
Matches are distributed among these distances:
402 95 0.01
403 3 0.00
404 168 0.02
405 12 0.00
406 27 0.00
408 1 0.00
410 1 0.00
412 3 0.00
413 2 0.00
414 2 0.00
415 2 0.00
416 3 0.00
417 5 0.00
418 214 0.02
419 91 0.01
420 42 0.00
421 3 0.00
422 1 0.00
423 1 0.00
424 2 0.00
425 127 0.01
426 287 0.03
427 395 0.05
428 211 0.02
429 1009 0.12
430 3262 0.38
431 1449 0.17
432 741 0.09
433 125 0.01
434 6 0.00
445 87 0.01
446 1 0.00
447 2 0.00
448 1 0.00
449 57 0.01
450 189 0.02
451 8 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (431 bp):
TTCAAGACTGATCCATTCCTTCGAGCAATATTTTGAACATTCCATACTCAGGAAATCGCATCATT
TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
TGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
AATTAAAAACTTATTTACATGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
Found at i:32209 original size:646 final size:646
Alignment explanation
Indices: 28639--39704 Score: 10551
Period size: 646 Copynumber: 17.2 Consensus size: 646
28629 TCTCTCTTGG
* *
28639 TTCAAGGACGATCCATTCCTTCGAGAAAATTTT-TGACCATTCCATGCTCGGGAAATCGTATCAT
1 TTCAA-GACGATCCATTCCTTCGAG-AAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCAT
* * * ** * * *
28703 TTCGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTGCAT
64 TTGGTCTAAATAGTTTGTCA-TTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACAT
*
28768 GAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTT
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTT
** * * * * *
28830 TTATAACTTTAGTTCCTTAAAGTATTCAAGTTGATCCATTCTTTCAAGCAATATTCTGAACATTC
192 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTC
** * * * * *
28895 CATACTCAATAAATCGTATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTT
257 CATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTT
* * * * * * *
28960 TGAATTAAAAACTTAATTACGTTACAATTGTTTCTCTCTTGGTTTTTGCACAAACTTCCAAACTA
322 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTT
* * * * *
29025 GTCCAACTTTTACGAGTTCCTTCACAGCTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCTT
387 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * *
29090 TGAGCAATTTTTCGGACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTATCATT
452 TGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
29155 TTGTAAACAAGTTTTCGTCTTTGAAATAAAAACTCACTTACGTGAGAATTGTTTCTCTCTTGGTT
517 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * * *
29220 -TTGCACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTGGTTTTGTAAAGT
582 CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCT-TAAAGT
29284 A
646 A
* * * *
29285 TTCAAGACGATCCGTTCCTTCGAGAAATTTTCTGAAAATACCATGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * * * * *
29350 AGTTTAAATAGTTTTTCATTTTGTAGCAAGTTTTAAT-TTTGAATTAAAAACTGATTTACAAGAG
66 GGTCTAAATAGTTTGTCATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
* ** * * * * * * * *
29414 AATTGCTTCTCTCTTGGTTCTCAGATGTAC-TCTGCATTTGTGAATCTTTTACGAGCTCTTTTAA
131 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
29478 AACTTCGGTTCCTTAAAGTGTTTAAGACGATCCATTCCTTCGAGAAATTTTC-GAACATTCCTTA
196 AACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATA
* * * *
29542 CTCAGTAAATCGCATCATTTGGTTTAAATAGTTTGTCAATCTGTAAACAAGTTTTAGTCTTTGAA
261 CTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAA
* * * * * **
29607 TTTAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCA
326 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTCA
* * * * * * *
29672 AACTTTTACGAGTTCTTTTACGACATCGG-TACTTAAAGTTTTCAAGATGATCCATTCCTTCGAG
391 AACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG
* * * *
29736 AAATTTTGT-GACCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTT
456 CAATTTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* ** * * * *
29800 TAAACAACTTTTAATTTTTGAATTATAAACTTATTTGCATGAGAATTGTTTC-C-CTTAGTTCTT
520 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * *
29863 GGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCCTAAAGTA
585 GGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTAAAGTA
* * * * * * *
29926 TTCAAG-CTGATCCATT-CTTACGAGCAATATTT-TAAACATTCTATACTCAGGAAATCGTATAA
1 TTCAAGAC-GATCCATTCCTT-CGAGAAAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATCA
* * * * * ** * * *
29988 TTTGCTCAAAAAATTTTGTTATTTTGTAAACAAGTTTTGGTATTTGAATTAAAAACTTAATTACG
63 TTTGGTCTAAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACA
* * * * ** * *
30053 TTAGAATTCTTTCTCTATTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACAAGTTCTT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * *
30118 TCACAACTTCGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTTGAGTAATTTTTTGAACATTC
192 TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTC
* * * * * * * *
30183 CCTGCTCAGGAAATAGCATAATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTT
257 CATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTT
* * * * ***
30248 TGAATTATAAACTTATTTGCATGAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTTGAACTT
322 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTT
* * * * *
30311 GTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCTATT-CTT
387 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
** * * * * * * *
30375 TCGAGCAA-AATTCTAAACATTCTATACTC-AGGAAATCGAATAATTTGGTCTAAATATTTTGTT
452 T-GAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * * * *
30438 ATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAA-TGTAATTACGTTAGAATTCTTTCTCTTTT
514 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACATGAGAATTGTTTCTCTCTT
* * * * * *
30502 GGTTCTTGCACGAACTTCCAAACTAGTCAAACATTTACGAGTTAC-TTCACAACTTCGGTCCTTA
578 GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCGGTTCTTA
30566 AAGTA
642 AAGTA
* * * * ** * * *
30571 TTCAAGTCAATCCATTCCTTTGAGCAATTTTCCCAACATTTCATGCTCGAGAAATTGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
** ** * *
30636 GGTCTAAATAGTTTACCATTTTGTGAAA-AAGTTTTGGTCTTTGAGA-TAAAAACTTACTTACGT
66 GGTCTAAATAGTTTGTCA-TTT-TGAAACAAGTTTTAATCTTTGA-ATTAAAAACTTATTTACAT
* ** ** * *
30699 GAGAATTGTTTCTATCTTGGTTC-TACACGAACTTC--AA--AATCAAACTTTAACGAGTTCCTT
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* * * *
30759 TATAACTTCGGTT-TTGTAAAGTATTCAAGATGATCCGTTCCTTCGAGAAATTTTTTGAACATAC
193 TATAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTC
* * * *
30823 CATGCTCAGGAAATCGCATCATTTAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAATCTT
257 CATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTT
* * * * *** *
30887 TGAATTAAAAACTTCTTTACATGAGAATTGTGTCTCTCTTGGTTCTTAG-ATGTACTTCTGCATT
322 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GCACGAACTTCCAAACT
* * * * * * * *
30951 TATGAAACTTTTGCGAGCTCTTTTAAAACTCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCT
386 TGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * * * * * *
31016 TCGTGAAATTTTCCGAACATTCAATACT-TAGTAAATCGCATCATTTTGTTTAAATAGTTTGTTA
451 TTGAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * * * *
31080 ATTTGTAAACAAGTTTTAGTCTTTCAATTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGA
515 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG
* * * * *
31145 TTCATGGACGAAATTCTGC-AA-TAGTCAAACTTTTACGA---C---T-T--C--AGGTACTTAA
580 TTCTTGGACGAACTTC--CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTAA
*
31197 AGTT
643 AGTA
* * *
31201 TTCAGGACGATCCATTCCTTCGAGAAATTTTCTAAACATTCCATGCTCGGGAAATCGCATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * ** * * * **
31266 GGTCTAAATAGTTTGTCATTTTTTAAACTACTTTTGGTTTTTGAATTATAAACTTCTTCGCATGA
66 GGTCTAAATAGTTTGTCA-TTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGA
* *
31331 GAATTG-TT-TCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA
** * *
31394 TAACTTCAATTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTT-TGAACATTCCA
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAAT-TTTCTGAACATTCCA
* * * * * *
31458 TACTCAGAAAATCACATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTG
259 TACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTG
* * * * *
31523 AATTAAAAACTTAATTACGTTAGAATTGTTTTTCTCTTGGTTCTTGCACGAACTTCCAAACTAGT
324 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGT
* * *
31588 CAAACTTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTTAAGACAATCCATTCCTTTG
389 CAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTG
* **
31653 AGCAATTTTTCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTACCATTTT
454 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
31718 GTAAACAAGTTTTGGTCTTTGAAATAAAAACTTACTTAAATGAGAATTGTTTCTCTCTTGGTTC-
519 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * * *
31782 TGCACTAACTTCAAAACATGTCAAACTTTTACAAATTCTTATATAACTTCGGTTTTGTAAAGTA
584 TGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCT-TAAAGTA
* * * * *
31846 TTCAAGACAATCCATTCCTTCGATAAATTTTCTGAACATACCATGCGCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * *
31911 AGTTTAAATAGTTTGTCATTTTGGAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
66 GGTCTAAATAGTTTGTCATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
* * * * * * * * * * *
31976 AATTGTTTCACTCTTGGTTCTTCGATGTACGTCTGCATTTGTGAAACCTTTACGAGCTCTTTTAA
131 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * ** *
32041 AACTTCGGTTCCTTAAAGTGTTTAAGATGATCCGTTCCTTAGAGAAATTTTCCAAACATTGCATA
196 AACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATA
** * * * *
32106 CTCAATAAATCGCATCATTTGGTTTAAATAGTTTGTTAATTTGTAAACAAGTTTTAATCTTTGAA
261 CTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAA
* * * * **
32171 TTAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTTCCGCACTTGTCA
326 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTCA
* * * * * * * * *
32236 AGCTTTTACGAGTTCTTTTACGACTAT-GGGTACTTAAAGTTTTCAGGATGATCCATTCCTTCGA
391 AACTTTTACGAGTTCTTTCACAACT-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA
* * * *
32300 G-AAATTTTCTGAATATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTAGTCATTTT
455 GCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * * *
32364 TTAAA-AACCTTTTGGTTTTTGAA-TAATAAAGTTATTTGCATGAGAGTTG-TT-TCTCTTAGTT
519 GTAAACAA-GTTTTGGTCTTTGAATTAA-AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * *
32425 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGGTTCCTTAAAGT
582 CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTAAAGT
32490 A
646 A
* * * * * * * *
32491 TTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGTATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * ** * * ** *
32556 GGTCTAAATATTTTGTTATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACATAATTATGTTA
66 GGTCTAAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGA
* * * * * *
32621 GAATTGTTACTCTCTTGGTTCTTGCACGAACTT-TCAAACTAGTCAAACTTTTACGAGTTCCTTC
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * *
32685 ACAACTTCGATTCCTTAAAGTATTCAAGATAATCC-TTTCTTGTGAGCAAA-TTTCCGAGCATGT
194 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT-CGAG-AAATTTTCTGAACAT-T
* * * **
32748 -CATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTT-GCT
256 CCATACTCAG-GAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAG-T
* * * * *
32810 CTTTGAAATAAAAACTTACTTACGTGAGAGTTGTTTCTCTCTTGGTTC-TGCACGAACTTCAAAA
319 CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA
* * * * * *
32874 CATGTCCAACTTTTACGAATTCTTTTATAACTTCGGTT-TTGTAAAGTATTCAAGACGATCCATT
384 CTTGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCT-TAAAGTATTCAAGACGATCCATT
* * * * * ** *
32938 CCTTCGAG-AAATTTTCTGAACATACCATGCT-TAGGAAATCGTATCATTTATTTTAAATAGTTT
448 CCTTTGAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTT
** *
33001 GTCATTTTGT-AACAAGTTTTAAT-TTTGAATTAAAAACTTATTTACATGAGAATTGTGTCTCTC
511 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * *** * * *
33064 TCGGTTCTTAGATGTACTTCTGCATTTGTGAAACTTTTACGAGGTCTTTT-TAAACTTCGGTTCC
576 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAT-AACTTCGGTT-C
*
33128 TTAAAGTC
639 TTAAAGTA
* * * * * *
33136 TTTAAGACGATCCGA-TCCTCCAAGAAATTTT-TCGAACATTCCATACTCAGTAAATCGCATCAT
1 TTCAAGACGATCC-ATTCCTTCGAGAAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCAT
* * *
33199 TTGGTTTAAATAGTTTGTCAATTTTTG-AACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACC
64 TTGGTCTAAATAGTTTGTC-A-TTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACA
* * * * *
33263 TGAGAATTGTCTCTCTCTTGGTTCATGGACGAACTT-TCGCACTTGTCAAGCTTTTACGACTTCT
127 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCT
** * * * * * * * *
33327 TTTACGACTTTAGG-TACTTAAAGTTTTTAGGACGATCCATTCCTTCGAGAAATTTTCTGGATAT
191 TTTATAAC-TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACAT
* * * * * * * *
33391 TCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAACCAACTTTTGGC
255 TCCATACTCAG-GAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGT
* * * * ***
33455 CTTTGAATTATAAACTTATTTGCATGAGAATTG-TT-TCTCTTAGTTCTTGGACGAACTTTTGAA
319 CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAA
* * **
33518 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATTATCCATT-
384 CTTGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * *
33582 CTTTCGAGCAA-TATTCTGAACATTCCATACTC-AGGAAATCACATAATTTGGTCTAAATATTTT
449 CTTT-GAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * * *
33645 GTTATTCTGTAATCAAGTTTTGGTCGTTGAATTAAAAACTTAATTACGTTAGAATTGTTTTTCTC
511 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * * * *
33710 TTGGTTTTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTTCAGTTCCT
576 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CT
*
33775 TAAAGTT
640 TAAAGTA
* * * * * * *
33782 TTTAAGACAATCCATTCCATT-GAGCAATTTTCCTGGACATTTCATGCTCGAGAAATCGCATGAT
1 TTCAAGACGATCCATTCC-TTCGAGAAATTTT-CTGAACATTCCATGCTCGGGAAATCGCATCAT
** * * * * *
33846 TTGGTCTAAATAGTTTACCATTTTGTAAACAAGTTTTGATCTTTGAAATAAAAAATTACTTACGT
64 TTGGTCTAAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACAT
* ** * *
33911 GAGAATTGTTTCTCTCTTGGTTC--GCACGAACTTCAAAACATGTCAAACTTTTACGAATTCTTT
128 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * *
33974 TATAACTTCGGTT-TTGTAAAGTATTCAAGACGATCCGTTTCTTCGAGAAATTTTCTGAACATAC
193 TATAACTTCGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTC
* * * * * * *
34038 CATGCTTAGTAAATCGTATTATTTAGTTTAAATAGTTTGTCATTTTGT-AACAAGTTTTAAT-TT
257 CATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTT
* * * *** *
34101 TGAATTAAAAACTTATTTACATGAGAATTGTGTT-TCTCTTGGTTCTTAG-ATGTACGTCTGCAT
322 TGAATTAAAAACTTATTTACATGAGAATTGT-TTCTCTCTTGGTTCTT-GCACGAACTTCCAAAC
* * *
34164 TTGTGAAACTTTTACGAGATCTTTTCA-AACTTCGGTTCC--------TTC--GA-GA---AAT-
385 TTGTCAAACTTTTACGAGTTC-TTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * * *
34213 -TTT---C------T-AAACATTGCATACTCAATAAATCGCATCATTTGGTTTAAATAGTTTGTC
449 CTTTGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * * *
34267 AATTTGTAAACAAGTTTTAGTCATTGAATTAAAAACTTATTTACCA-GAGAATTATCTCTCTCTT
514 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA-CATGAGAATTGTTTCTCTCTT
* ** ** * * ** *
34331 GCTTCAAGGACGAACTTCCGCACTTGTTAAGCTTTTACGAGTTCTTTTACGACTTTGGGTAT-TT
578 GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGT-TCTT
*
34395 AAAGTT
641 AAAGTA
* * * * * * *
34401 TTCAGGACTATCTATTCCTTC-ATGAAAATTTCAGAATATTCCATGCTCGAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGA-GAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATT
* * * * * ** * * *
34465 TGGTCTAAATAGTTAGTCTTTTTTTAAAAAACTTTTGGTTTTTGAATTATAAACTTATTTGCATG
65 TGGTCTAAATAGTTTGTC-ATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATG
* * *
34530 AGAATTGTTTCTCT-TT-GTTATTGGACGAACTT-TCGAACTTTTCAAACTTGTACGAGTTCTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTT
* * * *
34592 AATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCC
193 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCC
* * * * * * *
34657 ATACTCAGGAAATCGCATAATTTGGTCTAAATATTTTGTTATTCTGTAATCAAGTTTTGGTCGTT
258 ATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTT
* * * * * *
34722 GAATTAAAAACTTAATTACGTTAGGATTGTTTTTCTCTTGGTTCTTGCACGAACTTCCAAACTAG
323 GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTG
* * *
34787 TCAAACTTTTACGAGTTCCTTCACAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCATT
388 TCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT
* * * * **
34852 GAGCAATTTTCCAAGACATTTCATGCTCGAGAAATCGCATGATTTGGTCTAAATAGTTTACCATT
453 GAGCAATTTTTCGA-ACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
34917 TTGTAAACAAGTTTTGATCTTTGAAATAAAAAATTACTTACGTGAGAATTGTTTCTCTCTTGGTT
517 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * * *
34982 C-TGCACGAACTTCAAAACATGTCAAACTTTTACGAATTCTTTTATAACTTCGGTT-TTGAAAAG
582 CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTT--AAAG
35045 TA
645 TA
* * * *
35047 TTCAAGACTATCCATTCCTTCGAGAAATTTTCTAAACATACCATGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * * *
35112 AGTTTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCTTTGAATTAAAAACTTATTTCCGTGAG
66 GGTCTAAATAGTTTGTCATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
* * * *
35177 AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCT-AATCATGCCAAACTCTTACGAGTTCTTTTA
131 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA-CTTGTCAAACTTTTACGAGTTCTTTTA
* * * * ** *
35241 TAACTTCGGTCCCTTAAAATATTCAAGATGATCCATTCTTTCTACCAATATTCTGAA-ATTCCAT
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAT
* * * * *
35305 ACTCGGGAAATCGCATAATTTGGTTAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTGA
260 ACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGA
* * * * *
35370 ATTAAAAACTTGTTTACATGAGAATTGTTTCTCTCTTGGTTCTTAG-ATGAACTTCTACATTTGT
325 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GCACGAACTTCCAAACTTGT
* * * * * * * * *
35434 GAAACTTTTACGAGCTCTTTTAAAACTTCAGTTCCTTAAAGTGTTTAAGACGATCCGTTCCTTCG
389 CAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTG
** * * * * * **
35499 ATAAATTTTCCGAACATTCCATACTC-AGTAAATCACATCATTTGGTTTAAATAGTTTGTGAACT
454 AGCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
35563 TGTAAACAAGTTTTAGCCTTTGAATAAAAAACTTATTTACCTGAGAATTGTCTCTCTCTTGGTTC
518 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC
* * ** * * ** * *
35628 ATGGACGATCTTCCGCACTTGTCAAACTATTACGAGCTCTTTTACGACTTCGGGTACTTAAAGTT
583 TTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCTTAAAGTA
* * * *
35693 TTCTAGACGATCCATTCCTTCGATAAATTTTCTGAACATTTCATGCTCGGGAAATTGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * ** * * *
35758 GGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTTAATTATAAACTTATTTACATGA
66 GGTCTAAATAGTTTGTCA-TTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGA
* * * *
35823 GAATTG-TT-TCTCTTAGTTATTAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * *
35886 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCCAT
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAT
* * * *
35951 ACTCAGGAAATCGCATAATTTGGTCTAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGA
260 ACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGA
* * * * * *
36016 TTTAAAAACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTACCAAACTAGTC
325 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTC
* * * * * *
36081 AAACTTTTACAAGGTCCTTCACAACATCGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTTGA
390 AAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA
* * * **
36146 GCAATTTTTCGAACATTTCGTGCTCGAGAAATCGCATCATTTGCTCTAAATAGTTTACCATTTTG
455 GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
36211 TAAACAAGTATTGGTCTTTGAAATAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTC-T
520 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
36275 GCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTTTGTAAAGTA
585 GGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCT-TAAAGTA
* * *
36338 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATACCTTGCTCAGGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * * *
36403 AGTTTAAATAGTTTGTCATTTTGTAACAAGTTTTAATCCTTGAATTAAAAACTTATTT-CTGTGA
66 GGTCTAAATAGTTTGTCATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTAC-ATGA
* * *
36467 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCT-AATCATGCCAAACTTTTACGAGTTCTTTT
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA-CTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * ** * *
36531 ATAAATTCGGTCCCTTAAAATATTTAAGATGATCCATTCTTTCTACCAATATTCTGAAAATTCCA
194 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCA
* * * * *
36596 TACTCGGGAAATCGCATAATTTGGTTAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTG
259 TACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTG
* * * * *
36661 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAG-ATGTACTTCTACATTTG
324 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GCACGAACTTCCAAACTTG
* * * * * * * * *
36725 TGAAACTTTAACGAGCTCTTTTAAAACTTCGGTTCCTTAAAGTGTTTAAGACGATCCGTTCCTTC
388 TCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT
* ** * * * * * *
36790 AATAAATTTTCCGAACATTCCATACTC-AGTAAATCACATCATTTGGTTTAAATAGTTTGTGAAT
453 GAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
36854 TTGTAAACAAGTTTTAGTCTTTGAATAAAAAACTTATTTGCCTGAGAATTGTCTCTCTCTTGGTT
517 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * * ** * ** *
36919 CATGGACGAATTTTCGCACTTGTCAAACTATTACGAGTTCTTTTACGACTTCGGATACTTAAAGT
582 CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCTTAAAGT
*
36984 T
646 A
** *
36985 TTCTGGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATTGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * ** * * **
37050 GGTCTAAATAGTTTGTCATTTTTTAAACAACTTTTGGTTTTTTAATTATTAACTTATTTACATGA
66 GGTCTAAATAGTTTGTCA-TTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGA
* * * *
37115 GAATTG-TT-TCTCTTAGTTATTGGACGAACTTCCGAACTTGTCAAACTTTTACGTGTTCTTTTA
130 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * *
37178 TAACTTCTGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCTGAACATTCCAT
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCAT
* * * * *
37243 ACTCAGGAAATCGCATAATTTGGTCTAAATATTTTGTTATTTTGTAACCAAGTTTTGGTCTTTGA
260 ACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGA
* * * * * * *
37308 TTTAAAAACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTCCACGAACTACCAAACTAGTC
325 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTC
* * * * * * *
37373 AAACTTTTACGAGGTCCTTCATAACTTCGATTCCTTATAGTATTCAAGACAATCCATTCCTTCGA
390 AAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA
* * * * *
37438 G-AA-ATTT-G-ACATACCATGCTC-AGGAAATCGCATCATTTAGTTTAAATTGTTTGTCATTTT
455 GCAATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
** * * *
37498 GT-AACAAGTTTTAATCATTGAATTAAAAACTTATTTCCGTGAGAATTGTTTCTCTCTTGGTTCT
519 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * * * *
37562 TGGATGAACTTCCAATCATGTCAAACTTCTACGAGTTCTTTTATAACTTCGGTCCCTTAAAATA
584 TGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT-TCTTAAAGTA
* * * ** * * * *
37626 TTCAAGATGATCCATTCTTTCTACCAATATTCTGAAAAATT-CATACTCGGGAAATCGCATAATT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTG-AACATTCCATGCTCGGGAAATCGCATCATT
* *
37690 TGGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTACAG
65 TGGTCT-AAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTG--------A---A-TT----
* * ** * * * *
37754 ATTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGATGTCCTTCCGTATTTGTGA
112 A--AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
* * * * * * * * *
37819 AACTTTTATGAGCTCTTTTAGAACTTTGGATCCTTAAAGTGTTTAATATGACCCATTCCTTCGAG
175 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAG
* * * * * * *
37884 ATATTTTCCGAACATTCCATACTCAGTAATTCACATCATTTGGTTTAAATAGTTTGTCAATTTGT
240 AAATTTTCTGAACATTCCATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGT
* * * * *
37949 AAACAAGTTTTAATCGTTGAATTAAAAACTTGTTTACCTGAGAATTGTCTCTCTCTTGGTTCTTG
305 AAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
* * * * *
38014 GACGAACTGTCGC--ACTTGTTAAACTTTTACGAGTTCTTACACAACTTCGGTTACTTAAAGTTT
370 CACGAACT-TC-CAAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTAT
* * * * * * *
38077 TCAAGACGATCCATTTCATTGAGTAATTTTCCAAAAATTCCATGCTCGAGAAATCGTATCATTTG
433 TCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * * * * **
38142 GCCTAAATAGTTTTTCTTTTTGTAAACAACTTCTGGTCTTTGAATTAAAAACTTATTTATGTGAG
498 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAG
** *
38207 AATTG-TT-TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTAT
563 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAT
* *
38270 AACTTCGATTCATTAAAATA
628 AACTTCGGTTC-TTAAAGTA
* * * * * * * * *
38290 TTCAAGATGATCCATTCTTTCGAGCAATATTCTGAAAATTCAATACTCGGGAAATCACATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
38355 GGT-TAAAATATTTTGTCATTTCGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTTCATG
66 GGTCT-AAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATG
* * * * * * ** * * *
38419 AGAATTGTTTCTCTCTTGGTTCTTAGATGTACTTCCGCATTTGTGGAACTTTTATGTGCTCTTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * *
38484 AGAACTTTGGATCCTTAAAGTGTTTAATATGACCCATTCCTTCGAGATATTTTCCGAACATTCCA
194 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCA
* * * * * * * *
38549 TACTCAGTAATTCACATCATTTAGTTTAAATAGTTTGTCAATTTGTATACAAGTTTTAGTCGTTG
259 TACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTG
* * * * **
38614 AATTAAAAACTTATTTACCTGAGAATTGTCTCTCCCATGGTTCTTTG-ACGAACTTTCCCCACTT
324 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC-TTGCACGAAC-TTCCAAACTT
* * * *
38678 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTACTTAAAGTTTTCAA-AGCGATCCATTTCA
387 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCT
* * * * * *
38742 TTGAGTAA-TTTTCAGAAAATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAA-ACTTTTTCT
451 TTGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
38805 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATAG-TT-TCTCTTGG
515 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG
* * *
38868 TTCTTGGACGAACTTCTAGACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAA
580 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTAAA
*
38933 ATA
644 GTA
* * * * * * * * * * *
38936 TTCTATATGATCCATTCTTTCGAGCAATATTCTAAAAATTCCATACTCGGGAAATCACATAATTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * *
39001 GGT-TAAAATATTTTGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTTCATG
66 GGTCT-AAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATG
* * * * * * * *
39065 AGAATTGTTTCTCTCTTGGTTCTTAGA-TACACTTCTGCATTTGTGAAACTTTTATGTGCTCTTT
129 AGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * ** * * *
39129 TAGAACTTTGGATCCTTAAAGTGTTTAATTTGACCCATTCCTTCGAGATATTTTCCGAACATTCC
193 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCC
** * * * * * *
39194 ATACTCAATAATTCACATCATTTGGTTTAAATAGTTTGTCAATTTGTATACAAGTTTTAGTCGTT
258 ATACTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTT
* * * * **
39259 GAATTAAAAACTTATTTACCTGAGAATTGTCTCTCCCTTGGTTCTT-CGACGAACTTTCGCACTT
323 GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGC-ACGAACTTCCAAACTT
* * * *
39323 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTACTTAAAGTTTTCAAGACGATCCATTTCAT
387 GTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * *
39388 TGAGTAA-TTTTCAGAAAATTCCATGCTCGAGAAATCGCATCATTTGGCCTAAA-ACTTTTTCTT
452 TGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* *
39451 TTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGT
516 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT
* *
39514 TCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAA
581 TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTAAAG
39579 TA
645 TA
* * * * * * * * *
39581 TTCAAGATGATCCATTCTTTTGAGAAATATTCTGAAAATTTCATACTCGGGAAATCGCATAAGTT
1 TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
39646 GGT-TAAAATATTTTGTCATTTTGTACAGAAGTTTTAATGTTTGAATTAAAAACTTATTT
66 GGTCT-AAATAGTTTGTCATTTTG-AAACAAGTTTTAATCTTTGAATTAAAAACTTATTT
39705 TGATACGAGT
Statistics
Matches: 8655, Mismatches: 1524, Indels: 483
0.81 0.14 0.05
Matches are distributed among these distances:
616 3 0.00
617 2 0.00
618 213 0.02
619 180 0.02
620 84 0.01
621 2 0.00
626 1 0.00
628 12 0.00
629 17 0.00
630 122 0.01
631 5 0.00
632 3 0.00
633 134 0.02
634 231 0.03
635 4 0.00
636 3 0.00
637 4 0.00
639 42 0.00
640 133 0.02
641 497 0.06
642 202 0.02
643 347 0.04
644 545 0.06
645 1893 0.22
646 2805 0.32
647 581 0.07
648 46 0.01
649 2 0.00
652 3 0.00
653 3 0.00
656 1 0.00
657 1 0.00
659 21 0.00
660 2 0.00
661 252 0.03
662 3 0.00
663 10 0.00
664 161 0.02
665 45 0.01
666 40 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (646 bp):
TTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGAAACAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAG
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATA
CTCAGGAAATCGCATAATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAA
TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTCCAAACTTGTCA
AACTTTTACGAGTTCTTTCACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG
CAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
GACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCTTAAAGTA
Found at i:34837 original size:216 final size:216
Alignment explanation
Indices: 34199--39704 Score: 5242
Period size: 216 Copynumber: 25.5 Consensus size: 216
34189 CAAACTTCGG
* * * ** *
34199 TTCCTTCGAGAAATTTTCTAAACATTGCATACTCAATAAATCGCATCATTTGGTTTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
34264 GTCAATTTGTAAACAAGTTTTAGTCATTGAATTAAAAACTTATTTACCA-GAGAATTATCTCTCT
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTA-CATGAGAATTGTTTCTCT
* ** ** * * ** * * **
34328 CTTGCTTCAAGGACGAACTTCCGCACTTGTTAAGCTTTTACGAGTTCTTTTACGACTTTGGGTAT
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
34393 TTAAAGTTTTCAGGACT-ATCTA
195 TTAAAGTATTCAAGA-TGATCCA
* * * * *
34415 TTCCTTC-ATGAAAATTTCAGAATATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGT
1 TTCCTTCGA-GCAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGT
* * * * * * * * *
34478 TAGTCTTTTTTTAAAAAACTTTTGGTTTTTGAATTATAAACTTATTTGCATGAGAATTGTTTCTC
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * * * *
34543 T-TT-GTTATTGGACGAACTTTCGAACTTTTCAAACTTGTACGAGTTCTTTAATAACTTCGGTTC
129 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
34606 CTTAAAGTATTCAAGATGATCCA
194 CTTAAAGTATTCAAGATGATCCA
* * * *
34629 TTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTAAATATTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * * * * *
34694 GTTATTCTGTAATCAAGTTTTGGTCGTTGAATTAAAAACTTAATTACGTTAGGATTGTTTTTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * *
34759 TTGGTTCTTGCACGAACTTCCAAACTAGTCAAACTTTTACGAGTTCCTTCACAACTTCGGTTCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
**
34824 TAAAGTATTCAAGACAATCCA
196 TAAAGTATTCAAGATGATCCA
** * * *
34845 TTCCATT-GAGCAATTTTCCAAGACATTTCATGCTC-GAGAAATCGCATGATTTGGTCTAAATAG
1 TTCC-TTCGAGCAATTTTCTGA-ACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAG
** * * * *
34908 TTTACCATTTTGTAAACAAGTTTT-GATCTTTGAAATAAAAAATTACTTACGTGAGAATTGTTTC
63 TTTGTCATTTTGTAAACAAGTTTTAG-TCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTC
* * * *
34972 TCTCTTGGTTC-TGCACGAACTTCAAAACATGTCAAACTTTTACGAATTCTTTTATAACTTCGGT
127 TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
35036 T--TTGAAAAGTATTCAAGACT-ATCCA
192 TCCTT--AAAGTATTCAAGA-TGATCCA
* * * * * *
35061 TTCCTTCGAGAAATTTTCTAAACATACCATGCTCAGGAAATCGCATCATTTAGTTTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
35126 GTCATTTTGT-AACAAGTTTTAATCTTTGAATTAAAAACTTATTTCCGTGAGAATTGTTTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * * * *
35190 TTGGTTCTTGGATGAACTTCTAATCATGCCAAACTCTTACGAGTTCTTTTATAACTTCGGTCCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
*
35255 TAAAATATTCAAGATGATCCA
196 TAAAGTATTCAAGATGATCCA
* * * * * * *
35276 TTCTTTCTACCAATATTCTGAA-ATTCCATACTCGGGAAATCGCATAATTTGGT-TAAAATATTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGTT
* * *
35339 TGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTGTTTACATGAGAATTGTTTCTCT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * * * * * * * *
35404 CTTGGTTCTTAGATGAACTTCTACATTTGTGAAACTTTTACGAGCTCTTTTAAAACTTCAGTTCC
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * *
35469 TTAAAGTGTTTAAGACGATCCG
195 TTAAAGTATTCAAGATGATCCA
** * * * *
35491 TTCCTTCGATAAATTTTCCGAACATTCCATACTCAGTAAATCACATCATTTGGTTTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * * * *
35556 GTGAACTTGTAAACAAGTTTTAGCCTTTGAATAAAAAACTTATTTACCTGAGAATTGTCTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * ** * * ** * *
35621 TTGGTTCATGGACGATCTTCCGCACTTGTCAAACTATTACGAGCTCTTTTACGACTTCGGGTACT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * *
35686 TAAAGTTTTCTAGACGATCCA
196 TAAAGTATTCAAGATGATCCA
** * * * *
35707 TTCCTTCGATAAATTTTCTGAACATTTCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
35772 GTCATTTTTTAAACAACTTTTGGTTTTTTAATTATAAACTTATTTACATGAGAATTG-TT-TCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * ** *
35835 TTAGTTATTAGACGAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
35900 TAAAGTATTCAAGATGATCCA
196 TAAAGTATTCAAGATGATCCA
* * * *
35921 TTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTAAATATTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
35986 GTTATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTAATTACGTTAGAATTGTTTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * * * * * *
36051 TTGGTTCTTGCACGAACTACCAAACTAGTCAAACTTTTACAAGGTCCTTCACAACATCGGTTCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* **
36116 TAAAGCATTCAAGACAATCCA
196 TAAAGTATTCAAGATGATCCA
* * * * *
36137 TTCCTTTGAGCAATTTT-TCGAACATTTCGTGCTC-GAGAAATCGCATCATTTGCTCTAAATAGT
1 TTCCTTCGAGCAATTTTCT-GAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGT
** * * * * *
36200 TTACCATTTTGTAAACAAGTATTGGTCTTTGAAATAAAAACTTACTTACGTGAGAATTGTTTCTC
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * * *
36265 TCTTGGTTC-TGCACGAACTTCAAAACATGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT-
129 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
36328 TTGTAAAGTATTCAAGACGATCCA
194 CT-TAAAGTATTCAAGATGATCCA
* * * * * *
36352 TTCCTTCGAGAAATTTTCTGAACATACCTTGCTCAGGAAATCGCATCATTTAGTTTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
36417 GTCATTTTGT-AACAAGTTTTAATCCTTGAATTAAAAACTTATTT-CTGTGAGAATTGTTTCTCT
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTAC-ATGAGAATTGTTTCTCT
* * * * * * *
36480 CTTGGTTCTTGGATGAACTTCTAATCATGCCAAACTTTTACGAGTTCTTTTATAAATTCGGTCCC
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* *
36545 TTAAAATATTTAAGATGATCCA
195 TTAAAGTATTCAAGATGATCCA
* * * * * * * *
36567 TTCTTTCTACCAATATTCTGAAAATTCCATACTCGGGAAATCGCATAATTTGGT-TAAAATATTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGTT
* *
36631 TGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * * * * * * * * *
36696 CTTGGTTCTTAGATGTACTTCTACATTTGTGAAACTTTAACGAGCTCTTTTAAAACTTCGGTTCC
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * *
36761 TTAAAGTGTTTAAGACGATCCG
195 TTAAAGTATTCAAGATGATCCA
* ** * * * *
36783 TTCCTTCAATAAATTTTCCGAACATTCCATACTCAGTAAATCACATCATTTGGTTTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
36848 GTGAATTTGTAAACAAGTTTTAGTCTTTGAATAAAAAACTTATTTGCCTGAGAATTGTCTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * ** * ** * *
36913 TTGGTTCATGGACGAATTTTCGCACTTGTCAAACTATTACGAGTTCTTTTACGACTTCGGATACT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* ** *
36978 TAAAGTTTTCTGGACGATCCA
196 TAAAGTATTCAAGATGATCCA
* * * *
36999 TTCCTTCGAGAAATTTTCTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * **
37064 GTCATTTTTTAAACAACTTTTGGTTTTTTAATTATTAACTTATTTACATGAGAATTG-TT-TCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * *
37127 TTAGTTATTGGACGAACTTCCGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCTGTTCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
37192 TAAAGTATTCAAGATGATCCA
196 TAAAGTATTCAAGATGATCCA
* * * *
37213 TTCTTTCGAGCAATATTCTGAACATTCCATACTCAGGAAATCGCATAATTTGGTCTAAATATTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * *
37278 GTTATTTTGTAACCAAGTTTTGGTCTTTGATTTAAAAACTTAATTACGTTAGAATTGTTTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
** * * * * * *
37343 TTGGTTCTTCCACGAACTACCAAACTAGTCAAACTTTTACGAGGTCCTTCATAACTTCGATTCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* **
37408 TATAGTATTCAAGACAATCCA
196 TAAAGTATTCAAGATGATCCA
* * * * * *
37429 TTCCTTCGAG-AA-ATT-TG-ACATACCATGCTCAGGAAATCGCATCATTTAGTTTAAATTGTTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
37490 GTCATTTTGT-AACAAGTTTTAATCATTGAATTAAAAACTTATTTCCGTGAGAATTGTTTCTCTC
66 GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
* * * * *
37554 TTGGTTCTTGGATGAACTTCCAATCATGTCAAACTTCTACGAGTTCTTTTATAACTTCGGTCCCT
131 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
*
37619 TAAAATATTCAAGATGATCCA
196 TAAAGTATTCAAGATGATCCA
* * * * * * * *
37640 TTCTTTCTACCAATATTCTGAAAAATT-CATACTCGGGAAATCGCATAATTTGGT-TAAAATATT
1 TTCCTTCGAGCAATTTTCTG-AACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGT
* *
37703 TTGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTACAGATTAAAACTTATTT
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTG--------A---A-TT----A--AAAACTTATTT
* * ** ** * * * *
37768 ACATGAGAATTGTTTCTCTCTTGGTTCTTAGATGTCCTTCCGTATTTGTGAAACTTTTATGAGCT
111 ACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT
* * * * * * *
37833 CTTTTAGAACTTTGGATCCTTAAAGTGTTTAATATGACCCA
176 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCA
* * * * *
37874 TTCCTTCGAG-ATATTTTCCGAACATTCCATACTCAGTAATTCACATCATTTGGTTTAAATAGTT
1 TTCCTTCGAGCA-ATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
37938 TGTCAATTTGTAAACAAGTTTTAATCGTTGAATTAAAAACTTGTTTACCTGAGAATTGTCTCTCT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* ** *
38003 CTTGGTTCTTGGACGAACTGTCGC--ACTTGTTAAACTTTTACGAGTTCTTACACAACTTCGGTT
130 CTTGGTTCTTGGACGAACT-TC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
38066 ACTTAAAGTTTTCAAGACGATCCA
193 CCTTAAAGTATTCAAGATGATCCA
* * ** * * * *
38090 TTTCATT-GAGTAATTTTCCAAAAATTCCATGCTC-GAGAAATCGTATCATTTGGCCTAAATAGT
1 -TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGT
* * * * * **
38153 TTTTCTTTTTGTAAACAACTTCTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG-TT-TC
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
** * *
38216 TCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGATTC
129 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
38281 ATTAAAATATTCAAGATGATCCA
194 CTTAAAGTATTCAAGATGATCCA
* * * * * * * *
38304 TTCTTTCGAGCAATATTCTGAAAATTCAATACTCGGGAAATCACATAATTTGGT-TAAAATATTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGTT
* * * *
38368 TGTCATTTCGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTTCATGAGAATTGTTTCTCT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * * ** * ** * * * * * *
38433 CTTGGTTCTTAGATGTACTTCCGCATTTGTGGAACTTTTATGTGCTCTTTTAGAACTTTGGATCC
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * *
38498 TTAAAGTGTTTAATATGACCCA
195 TTAAAGTATTCAAGATGATCCA
* * * * * *
38520 TTCCTTCGAG-ATATTTTCCGAACATTCCATACTCAGTAATTCACATCATTTAGTTTAAATAGTT
1 TTCCTTCGAGCA-ATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
38584 TGTCAATTTGTATACAAGTTTTAGTCGTTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCC
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * ** * * *
38649 CATGGTTCTTTGACGAACTTTCCCCACTTGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTA
130 CTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
38714 CTTAAAGTTTTCAA-AGCGATCCA
194 CTTAAAGTATTCAAGA-TGATCCA
* * * * * * *
38737 TTTCATT-GAGTAATTTTCAGAAAATTCCATGCTC-GAGAAATCGCATCATTTGGCCTAAA-ACT
1 -TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGT
* * * * *
38799 TTTTCTTTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATAG-TT-TC
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
* * *
38862 TCTTGGTTCTTGGACGAACTTCTAGACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTC
129 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * *
38927 CTTAAAATATTCTATATGATCCA
194 CTTAAAGTATTCAAGATGATCCA
* * * * * * * *
38950 TTCTTTCGAGCAATATTCTAAAAATTCCATACTCGGGAAATCACATAATTTGGT-TAAAATATTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGTT
* * *
39014 TGTCATTTTGTAAATAAGTTTTAATCTTTGAATTAAAAACTTATTTTCATGAGAATTGTTTCTCT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * *** * * * * * * * *
39079 CTTGGTTCTTAGA-TACACTTCTGCATTTGTGAAACTTTTATGTGCTCTTTTAGAACTTTGGATC
130 CTTGGTTCTTGGACGA-ACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * ** *
39143 CTTAAAGTGTTTAATTTGACCCA
194 CTTAAAGTATTCAAGATGATCCA
* ** * * *
39166 TTCCTTCGAG-ATATTTTCCGAACATTCCATACTCAATAATTCACATCATTTGGTTTAAATAGTT
1 TTCCTTCGAGCA-ATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
39230 TGTCAATTTGTATACAAGTTTTAGTCGTTGAATTAAAAACTTATTTACCTGAGAATTGTCTCTCC
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
* * ** * * *
39295 CTTGGTTCTTCGACGAACTTTCGCACTTGTCAAACTTTTACGAGTTCTTTCACAACTTCGGTTAC
130 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* *
39360 TTAAAGTTTTCAAGACGATCCA
195 TTAAAGTATTCAAGATGATCCA
* * * * * * *
39382 TTTCATT-GAGTAATTTTCAGAAAATTCCATGCTC-GAGAAATCGCATCATTTGGCCTAAA-ACT
1 -TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGT
* * * * *
39444 TTTTCTTTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG-TT-TC
64 TTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTC
*
39507 TCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
129 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
*
39572 CTTAAAATATTCAAGATGATCCA
194 CTTAAAGTATTCAAGATGATCCA
* * * * * * * * * *
39595 TTCTTTTGAGAAATATTCTGAAAATTTCATACTCGGGAAATCGCATAAGTTGGT-TAAAATATTT
1 TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCT-AAATAGTT
* * * *
39659 TGTCATTTTGTACAGAAGTTTTAATGTTTGAATTAAAAACTTATTT
65 TGTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTT
39705 TGATACGAGT
Statistics
Matches: 4307, Mismatches: 876, Indels: 216
0.80 0.16 0.04
Matches are distributed among these distances:
211 122 0.03
212 60 0.01
213 230 0.05
214 952 0.22
215 630 0.15
216 1916 0.44
217 210 0.05
218 8 0.00
222 2 0.00
223 1 0.00
224 1 0.00
226 1 0.00
227 1 0.00
228 2 0.00
232 1 0.00
233 6 0.00
234 163 0.04
235 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TTCCTTCGAGCAATTTTCTGAACATTCCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTATTCAAGATGATCCA
Done.