Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013345.1 Kokia drynarioides strain JFW-HI SEQ_128368, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3282
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1826 original size:23 final size:23

Alignment explanation


    Indices: 1800--1849  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       1790 TGATTTGATC

                     * *            
       1800 ATGATATGAGATAAAAAA-TGAGA
          1 ATGATATGAAAAAAAAAATTGA-A

                 *                 
       1823 ATGATGTGAAAAAAAAAATTGAA
          1 ATGATATGAAAAAAAAAATTGAA

                
       1846 ATGA
          1 ATGA

       1850 AACTAGATTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  23   20  0.87
  24    3  0.13

ACGTcount: A:0.58, C:0.00, G:0.20, T:0.22


Consensus pattern (23 bp):   
ATGATATGAAAAAAAAAATTGAA

Found at i:2822 original size:27 final size:27

Alignment explanation


    Indices: 2792--2853  Score: 124
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       2782 ATTCTTAGAC

                                       
       2792 GGTCGTGGGCAGTCCCAATTCCCTGAT
          1 GGTCGTGGGCAGTCCCAATTCCCTGAT

                                       
       2819 GGTCGTGGGCAGTCCCAATTCCCTGAT
          1 GGTCGTGGGCAGTCCCAATTCCCTGAT

                    
       2846 GGTCGTGG
          1 GGTCGTGG

       2854 ACTACTCTGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   35  1.00

ACGTcount: A:0.13, C:0.27, G:0.34, T:0.26


Consensus pattern (27 bp):   
GGTCGTGGGCAGTCCCAATTCCCTGAT
Done.