Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013346.1 Kokia drynarioides strain JFW-HI SEQ_128369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70917
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Found at i:4781 original size:16 final size:16
Alignment explanation
Indices: 4757--4806 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
4747 TTTTATTTAT
*
4757 TAAATAAATAAACAAA
1 TAAAAAAATAAACAAA
4773 TAAAAAAATAATA-AAA
1 TAAAAAAATAA-ACAAA
*
4789 TTAAAAAAATATACAAA
1 -TAAAAAAATAAACAAA
4806 T
1 T
4807 CCAATTTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAAAAAATAAACAAA
Found at i:4788 original size:8 final size:8
Alignment explanation
Indices: 4757--4799 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
4747 TTTTATTTAT
*
4757 TAAATAAA
1 TAAAAAAA
*
4765 TAAACAAA
1 TAAAAAAA
4773 TAAAAAAA
1 TAAAAAAA
*
4781 TAATAAAAT
1 TAA-AAAAA
4790 TAAAAAAA
1 TAAAAAAA
4798 TA
1 TA
4800 TACAAATCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (8 bp):
TAAAAAAA
Found at i:6034 original size:30 final size:30
Alignment explanation
Indices: 5982--6110 Score: 172
Period size: 30 Copynumber: 4.3 Consensus size: 30
5972 AAAATCATTT
* *
5982 TTTAACCCCCAAAGTTTTCAAAAGTTCAAA
1 TTTAACCCCTAAAGTTTTCAAAAATTCAAA
*
6012 TTTCACCCCTAAA-TTTTCCAAAAATTCAAA
1 TTTAACCCCTAAAGTTTT-CAAAAATTCAAA
*
6042 TTTAACCCCTAAA-TTTTCCAAAAAATCAAA
1 TTTAACCCCTAAAGTTTT-CAAAAATTCAAA
*
6072 TTTAACCCCTAAAGTTTTCAAAAATTAAAA
1 TTTAACCCCTAAAGTTTTCAAAAATTCAAA
*
6102 TTTGACCCC
1 TTTAACCCC
6111 ATTCTAATGT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
29 4 0.04
30 81 0.91
31 4 0.04
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (30 bp):
TTTAACCCCTAAAGTTTTCAAAAATTCAAA
Found at i:6997 original size:20 final size:22
Alignment explanation
Indices: 6953--6997 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
6943 CCCAATTCTA
* *
6953 TTTACTCATCACTTCTCATTTC
1 TTTACTCAACACTTCTCAATTC
6975 TTTACTCAACA-TT-TCAATTC
1 TTTACTCAACACTTCTCAATTC
6995 TTT
1 TTT
6998 CATTCCCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 2 0.10
22 10 0.48
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTACTCAACACTTCTCAATTC
Found at i:9401 original size:20 final size:22
Alignment explanation
Indices: 9363--9403 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
9353 AAAAGAATAA
9363 AAATGAGAAAAATAAAGTGAAGT
1 AAATGAGAAAAAT-AAGTGAAGT
9386 AAATGA-AAAAAT-AGTGAA
1 AAATGAGAAAAATAAGTGAA
9404 CGAAAGAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
22 6 0.33
23 6 0.33
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (22 bp):
AAATGAGAAAAATAAGTGAAGT
Found at i:10054 original size:6 final size:6
Alignment explanation
Indices: 10043--10087 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
10033 TTAAAACATT
* * *
10043 TCTTGG TCTTGG TCTTGG TCTTGT TCTTGT TCTTGT TCTT-G TCTT
1 TCTTGG TCTTGG TCTTGG TCTTGG TCTTGG TCTTGG TCTTGG TCTT
10088 CCGCAGGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.00, C:0.18, G:0.22, T:0.60
Consensus pattern (6 bp):
TCTTGG
Found at i:10060 original size:12 final size:12
Alignment explanation
Indices: 10042--10087 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
10032 TTTAAAACAT
10042 TTCTTGGTCTTG
1 TTCTTGGTCTTG
*
10054 GTCTTGGTCTTG
1 TTCTTGGTCTTG
*
10066 TTCTTGTTCTTG
1 TTCTTGGTCTTG
10078 TTCTT-GTCTT
1 TTCTTGGTCTT
10088 CCGCAGGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
11 4 0.13
12 26 0.87
ACGTcount: A:0.00, C:0.17, G:0.22, T:0.61
Consensus pattern (12 bp):
TTCTTGGTCTTG
Found at i:10763 original size:24 final size:23
Alignment explanation
Indices: 10727--10792 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 23
10717 ATTCTCTCAG
10727 CCTCCTGCT-TTCTTCTCTCCTTGT
1 CCTCC-GCTATTC-TCTCTCCTTGT
*
10751 CCTCCGTTATTCTCT-T-CTTGT
1 CCTCCGCTATTCTCTCTCCTTGT
*
10772 TCTCCGCTATTCTCTTCTCCT
1 CCTCCGCTATTCTC-TCTCCT
10793 CATCTTTTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 17 0.49
22 2 0.06
23 6 0.17
24 10 0.29
ACGTcount: A:0.03, C:0.39, G:0.08, T:0.50
Consensus pattern (23 bp):
CCTCCGCTATTCTCTCTCCTTGT
Found at i:10787 original size:21 final size:21
Alignment explanation
Indices: 10739--10789 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
10729 TCCTGCTTTC
* *
10739 TTCTCTCCTTGTCCTCCGTTA
1 TTCTCTTCTTGTCCTCCGCTA
*
10760 TTCTCTTCTTGTTCTCCGCTA
1 TTCTCTTCTTGTCCTCCGCTA
10781 TTCTCTTCT
1 TTCTCTTCT
10790 CCTCATCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.35, G:0.08, T:0.53
Consensus pattern (21 bp):
TTCTCTTCTTGTCCTCCGCTA
Found at i:12757 original size:24 final size:24
Alignment explanation
Indices: 12725--12778 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
12715 GCGACGTAGA
12725 AGCCTCCTTCATCCCGCGGTTGGC
1 AGCCTCCTTCATCCCGCGGTTGGC
12749 AGCCTCCTTCATCCCGCGGTTGGC
1 AGCCTCCTTCATCCCGCGGTTGGC
12773 AGCCTC
1 AGCCTC
12779 GGAAAGTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.09, C:0.43, G:0.24, T:0.24
Consensus pattern (24 bp):
AGCCTCCTTCATCCCGCGGTTGGC
Found at i:16297 original size:16 final size:16
Alignment explanation
Indices: 16264--16308 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
16254 AAATTTCAAC
16264 AAATATAATATATAAATT
1 AAAT-TAATAT-TAAATT
* *
16282 TATTTAATATTAAATT
1 AAATTAATATTAAATT
16298 AAATTAATATT
1 AAATTAATATT
16309 TTAAAAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 15 0.65
17 6 0.26
18 2 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTAATATTAAATT
Found at i:24742 original size:2 final size:2
Alignment explanation
Indices: 24735--24762 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24725 GTTTTGACAA
24735 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
24763 TTAGTGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:37714 original size:22 final size:22
Alignment explanation
Indices: 37684--37732 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
37674 CAACTCAATG
37684 ATATAATGAAATACATACATAT
1 ATATAATGAAATACATACATAT
* *
37706 ATATGATGAAATACATGCATAT
1 ATATAATGAAATACATACATAT
37728 ATATA
1 ATATA
37733 TACACATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (22 bp):
ATATAATGAAATACATACATAT
Found at i:41149 original size:2 final size:2
Alignment explanation
Indices: 41142--41176 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
41132 AAAAGAGCTC
41142 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
41177 AGTACCTCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:44375 original size:74 final size:76
Alignment explanation
Indices: 44164--44446 Score: 295
Period size: 76 Copynumber: 3.8 Consensus size: 76
44154 GGTATATCCA
* * * * * * *
44164 ACTAGTGCTAGGCACACTTCTTATATTCGTTGGTTTATACGATTAGCGCTTGACGCAACTTTTGT
1 ACTAGTGCTGGGCACACTTCTTATATTCGTCGGTTTATCCAACTAGCGCTGGACGCAACTTTCGT
*
44229 CAGTTTATCTA
66 CAGTTTATCTG
* * **
44240 ACTAGTGCTGGGCATACTTCTTATATTTGTCGGTTTATCCAACTAGCGCTGGACATAACTTTCGT
1 ACTAGTGCTGGGCACACTTCTTATATTCGTCGGTTTATCCAACTAGCGCTGGACGCAACTTTCGT
*
44305 CAATTTATCTG
66 CAGTTTATCTG
* * * * ** * *
44316 ACCAGTGTTGGGC-CGCTTTTTATATTCGTCGG-TTATCTGACTAGCGTTGGGCGCAACTTTCGT
1 ACTAGTGCTGGGCACACTTCTTATATTCGTCGGTTTATCCAACTAGCGCTGGACGCAACTTTCGT
* *
44379 TAGTTTAACTG
66 CAGTTTATCTG
* * *
44390 ACTAGTGCTGGGCACACATT-TGACA-TCGTCGGTTTATCCAATTAGCGCTGGACGCAA
1 ACTAGTGCTGGGCACAC-TTCTTATATTCGTCGGTTTATCCAACTAGCGCTGGACGCAA
44447 AACTTTGTTA
Statistics
Matches: 166, Mismatches: 38, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
74 51 0.31
75 39 0.23
76 76 0.46
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (76 bp):
ACTAGTGCTGGGCACACTTCTTATATTCGTCGGTTTATCCAACTAGCGCTGGACGCAACTTTCGT
CAGTTTATCTG
Found at i:49140 original size:6 final size:6
Alignment explanation
Indices: 49129--49167 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
49119 TGATCAAAAT
* * *
49129 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
49168 TATGAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:50407 original size:41 final size:41
Alignment explanation
Indices: 50362--50461 Score: 146
Period size: 41 Copynumber: 2.4 Consensus size: 41
50352 GGGTGTTACA
* * *
50362 CTTGAGCCAAGCAGGCTTTATGCCAGTGTATTGCATCTGGC
1 CTTGAGCCTAGCAGGCTTTATGCCAATGTATTGCATCGGGC
* *
50403 CTTGAGCCTAGCAGGCTATATGCCAATGTATTGTATCGGGC
1 CTTGAGCCTAGCAGGCTTTATGCCAATGTATTGCATCGGGC
*
50444 CTTGTGCCTAGCAGGCTT
1 CTTGAGCCTAGCAGGCTT
50462 CCTACCGATG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.30
Consensus pattern (41 bp):
CTTGAGCCTAGCAGGCTTTATGCCAATGTATTGCATCGGGC
Found at i:58101 original size:23 final size:23
Alignment explanation
Indices: 58066--58164 Score: 108
Period size: 23 Copynumber: 4.3 Consensus size: 23
58056 ACATTAGCGC
* *
58066 GCTCTCTGTTTAGCACCGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
58089 GCTCTCTAATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * *
58112 GCTCTTTGATTAGTACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * *
58135 ACTCTTTGTTTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
58158 GCTCTCT
1 GCTCTCT
58165 ATTGCCCAGC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.45
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:58213 original size:69 final size:68
Alignment explanation
Indices: 58067--58206 Score: 171
Period size: 69 Copynumber: 2.0 Consensus size: 68
58057 CATTAGCGCG
* *
58067 CTCTCTGTTTAGCACCGTGTGTGCTCTCTAATTAGCACTTTGTGTGCTCTTTGATTAGTACTTTG
1 CTCTTTGTTTAGCACCGTGTGTGCTCTCTAATTAGCACTTTGTGT-CTCTCTGATTAGTACTTTG
58132 TGTA
65 TGTA
*
58136 CTCTTTGTTTAGCACTGTGTGTGCTCTCT-ATTGCCCAGCACTTATGTGT-TCTCTG-TTAGTAC
1 CTCTTTGTTTAGCACCGTGTGTGCTCTCTAATT----AGCACTT-TGTGTCTCTCTGATTAGTAC
58198 TTTG-GTA
61 TTTGTGTA
58205 CT
1 CT
58207 TCTTGTTCGT
Statistics
Matches: 63, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
68 3 0.05
69 32 0.51
70 11 0.17
71 5 0.08
72 7 0.11
73 5 0.08
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.45
Consensus pattern (68 bp):
CTCTTTGTTTAGCACCGTGTGTGCTCTCTAATTAGCACTTTGTGTCTCTCTGATTAGTACTTTGT
GTA
Found at i:62126 original size:193 final size:194
Alignment explanation
Indices: 61734--62179 Score: 569
Period size: 193 Copynumber: 2.3 Consensus size: 194
61724 TACCAGTACT
* * * * *
61734 CGATGCTGCTCACACGAGCTGTCGAGGACTCGTAACATATGCGGTACCCCAGCCATCGGTACGGT
1 CGATGCTGCTCACATGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACGGT
* * * *
61799 GCCTGTCTGTACTATAAACTATTCCCTAATGATGCTGCTTACACGAGCTGTCGAGAGTATGCATA
66 G-CTATCTGTACTATAAACTATTCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATA
* * * * *
61864 AAGCATAGTCCCAACCATTGTAGGACCTGTAATCCATTTAGGATTCATATCTCTTTCTCGTGTCA
130 AAGCATAATACCAACCATCGTAGGACCTGTAATCCATTTAGGATCCATATCTCTTTCTCGAGTCA
* * *
61929 CGATGCTGCTTACATGAGTTGTCGAGGACTCACAACATATGCGGTACCTCAACCATCGATAC-G-
1 CGATGCTGCTCACATGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACGGT
* *
61992 G-TATCTGTAC-ATATAACTGTTCCCTAACGATGCTGCTCACACGAGTTGTCGAGAATATGCACT
66 GCTATCTGTACTATA-AACTATTCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCA-T
* * * * * *
62055 TATGCATAAATATCAGCCATCGTAAGG-CCTGTAATCCATTTAGGATCCATATCTCTTTTTTGAG
129 AAAGCAT-AATACCAACCATCGT-AGGACCTGTAATCCATTTAGGATCCATATCTCTTTCTCGAG
62119 TCA
192 TCA
* *
62122 CGATGCTGCTCACATGAGCTATCAAGGACTCGCAACATATGCGGTACCTCAACCATCG
1 CGATGCTGCTCACATGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCG
62180 CGTTGATTTC
Statistics
Matches: 217, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
190 3 0.01
191 50 0.23
192 6 0.03
193 100 0.46
194 4 0.02
195 54 0.25
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (194 bp):
CGATGCTGCTCACATGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACGGT
GCTATCTGTACTATAAACTATTCCCTAACGATGCTGCTCACACGAGCTGTCGAGAATATGCATAA
AGCATAATACCAACCATCGTAGGACCTGTAATCCATTTAGGATCCATATCTCTTTCTCGAGTCA
Found at i:67529 original size:25 final size:25
Alignment explanation
Indices: 67418--67514 Score: 167
Period size: 25 Copynumber: 3.9 Consensus size: 25
67408 CGAAGTACTT
*
67418 AACAGAAGCGCATAAGTGCTGGGGA
1 AACAGAAGCACATAAGTGCTGGGGA
*
67443 AACAGAAGCGCATAAGTGCTGGGGA
1 AACAGAAGCACATAAGTGCTGGGGA
*
67468 AACAGAAGCACATAAGTTCTGGGGA
1 AACAGAAGCACATAAGTGCTGGGGA
67493 AACAGAAGCACATAAGTGCTGG
1 AACAGAAGCACATAAGTGCTGG
67515 AAAACAGTAG
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.38, C:0.16, G:0.32, T:0.13
Consensus pattern (25 bp):
AACAGAAGCACATAAGTGCTGGGGA
Found at i:67529 original size:50 final size:50
Alignment explanation
Indices: 67418--67539 Score: 165
Period size: 50 Copynumber: 2.4 Consensus size: 50
67408 CGAAGTACTT
* * *
67418 AACAGAAGCGCATAAGTGCTGGGGAAACAGAAGCGCATAAGTGCTGGGGA
1 AACAGAAGCACATAAGTGCTGGGGAAACAGAAGCACATAAGTGCTGGGAA
*
67468 AACAGAAGCACATAAGTTCTGGGGAAACAGAAGCACATAAGTGCT-GGAA
1 AACAGAAGCACATAAGTGCTGGGGAAACAGAAGCACATAAGTGCTGGGAA
* *
67517 AACAGTAGGCACACACAGTGCTG
1 AACAG-AAGCACATA-AGTGCTG
67540 AACAGAAGCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 8 0.13
50 49 0.78
51 6 0.10
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.13
Consensus pattern (50 bp):
AACAGAAGCACATAAGTGCTGGGGAAACAGAAGCACATAAGTGCTGGGAA
Found at i:67551 original size:22 final size:22
Alignment explanation
Indices: 67492--67593 Score: 107
Period size: 22 Copynumber: 4.5 Consensus size: 22
67482 AGTTCTGGGG
*
67492 AAACAGAAGCACATA-AGTGCT
1 AAACAGAAGCACACACAGTGCT
*
67513 GGAAAACAGTAGGCACACACAGTGCT
1 ---AAACAG-AAGCACACACAGTGCT
*
67539 GAACAGAAGCACACACAGTGCT
1 AAACAGAAGCACACACAGTGCT
* *
67561 AAACAAAAGCACACATAGTGCT
1 AAACAGAAGCACACACAGTGCT
67583 AAACAGTAAGC
1 AAACAG-AAGC
67594 GCACTAGCGT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
22 39 0.58
23 9 0.13
24 6 0.09
25 7 0.10
26 6 0.09
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.12
Consensus pattern (22 bp):
AAACAGAAGCACACACAGTGCT
Found at i:69480 original size:23 final size:23
Alignment explanation
Indices: 69427--69484 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 23
69417 GGAACACTAG
69427 CGTGCTCTCTATTTAGACTGTTT
1 CGTGCTCTCTATTTAGACTGTTT
*
69450 -GTGCTCTCTGTTTAGCAC-GTTT
1 CGTGCTCTCTATTTAG-ACTGTTT
69472 CGTGCTCTCTATT
1 CGTGCTCTCTATT
69485 ATTAGAACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.10, C:0.24, G:0.19, T:0.47
Consensus pattern (23 bp):
CGTGCTCTCTATTTAGACTGTTT
Done.