Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013350.1 Kokia drynarioides strain JFW-HI SEQ_128373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7274
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:5548 original size:30 final size:29

Alignment explanation


    Indices: 5512--5568  Score: 87
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       5502 AACATTTCAT

                      *                   
       5512 AAATAGTGGATCCAATTAGGAAAAAAAAAC
          1 AAATAGTGGACCCAATT-GGAAAAAAAAAC

                             *         
       5542 AAATAGTGGACCCAATTTGAAAAAAAA
          1 AAATAGTGGACCCAATTGGAAAAAAAA

       5569 TGGTGGGTTC


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  29    9  0.36
  30   16  0.64

ACGTcount: A:0.56, C:0.11, G:0.16, T:0.18


Consensus pattern (29 bp):   
AAATAGTGGACCCAATTGGAAAAAAAAAC
Done.