genome.fa.s13355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013355.1 Kokia drynarioides strain JFW-HI SEQ_128378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  398338

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--31	2	15.5	2	100	0	62	48	0	0	51	1.00
2205--2252	23	2.1	23	96	0	87	31	27	4	37	1.76
4925--5181	86	2.9	86	82	11	265	38	15	8	36	1.78
5296--5477	10	18.5	10	67	17	69	64	0	2	32	1.12
5308--5334	6	4.5	6	100	0	54	85	0	0	14	0.61
5363--5490	59	2.2	59	82	10	156	62	1	3	32	1.20
5405--5488	19	4.3	19	76	8	80	65	2	3	28	1.22
5405--5488	29	2.9	28	73	8	78	65	2	3	28	1.22
5586--5615	7	4.3	7	95	0	51	76	0	0	23	0.78
5689--5796	29	3.7	29	76	7	103	34	4	1	59	1.29
15291--15485	74	2.6	73	79	6	180	47	14	10	27	1.76
15366--15637	73	3.6	74	76	9	221	45	12	11	30	1.78
15285--15636	38	9.4	38	72	13	187	45	13	11	29	1.78
15781--15814	17	1.9	18	94	5	61	70	0	0	29	0.87
18890--18929	7	5.7	7	90	0	62	40	27	2	30	1.70
19561--19918	38	9.7	38	85	3	414	37	14	20	27	1.92
19561--19912	74	4.8	75	82	6	414	38	14	20	27	1.91
19909--20242	141	2.4	140	86	3	467	30	20	20	27	1.98
25802--25879	39	2.0	39	97	0	147	34	25	16	23	1.95
32185--32217	16	2.1	16	94	0	57	18	18	0	63	1.31
32824--33121	39	7.5	39	77	9	244	29	26	17	26	1.97
32864--33104	81	3.0	81	84	1	340	30	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32825--33058	120	1.9	119	84	6	301	29	26	18	26	1.98
41005--41047	21	2.0	21	100	0	86	13	13	34	37	1.85
53383--53453	31	2.3	30	80	9	81	2	35	0	61	1.10
59486--59538	18	2.9	18	72	10	54	24	13	20	41	1.88
63133--63292	80	2.0	79	88	1	239	31	25	19	24	1.98
65561--65603	13	3.4	12	83	6	50	4	11	0	83	0.78
66409--66433	13	1.9	13	100	0	50	72	0	0	28	0.86
67428--67461	15	2.3	15	89	0	50	14	20	20	44	1.87
74591--74634	19	2.4	18	81	7	52	68	2	4	25	1.20
82658--82733	39	1.9	40	89	7	120	51	0	1	47	1.09
82665--82750	39	2.2	38	84	15	106	52	1	0	46	1.08
82785--82837	6	8.5	6	83	8	70	0	62	0	37	0.96
91089--91962	431	2.0	431	92	1	1464	33	24	14	27	1.94
92622--92808	81	2.3	81	91	0	293	20	18	29	31	1.96
105605--105656	25	2.1	25	85	7	70	13	9	15	61	1.56
105614--105663	24	2.1	24	88	7	75	10	10	16	64	1.50
105614--105663	25	2.1	24	85	7	66	10	10	16	64	1.50
109881--109926	23	2.0	23	100	0	92	30	26	0	43	1.55
112323--112418	50	1.9	50	91	4	158	51	17	10	20	1.75
115916--115968	14	3.6	14	84	5	70	30	11	18	39	1.86
115998--116076	20	4.0	19	82	12	81	53	7	1	37	1.38
115998--116076	21	4.0	18	81	15	70	53	7	1	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118666--118690	12	2.1	12	100	0	50	40	0	8	52	1.31
129836--129899	32	2.0	32	96	0	119	25	28	14	32	1.94
133586--134013	43	10.0	43	76	5	337	28	25	16	30	1.96
133594--134013	86	4.9	85	80	5	373	27	25	16	30	1.97
134283--134415	65	2.0	66	81	7	155	13	25	19	41	1.88
135290--135324	16	2.1	17	89	5	54	25	8	2	62	1.38
140044--140115	26	2.8	26	91	0	108	41	1	8	48	1.42
140069--140270	26	8.1	25	67	11	101	45	0	6	47	1.29
140106--140181	22	3.3	22	65	13	62	47	0	7	44	1.32
140080--140216	48	2.9	48	96	0	247	43	0	8	47	1.34
140196--140267	8	8.5	8	76	8	63	55	0	2	41	1.14
140176--140251	34	2.2	36	90	4	120	46	0	6	47	1.28
140196--140293	52	1.9	51	91	2	160	48	0	6	44	1.27
141645--141817	57	3.0	56	74	6	150	36	17	12	34	1.87
143449--143487	19	2.1	19	100	0	78	43	20	15	20	1.88
144462--144658	40	4.9	40	77	7	173	22	19	19	38	1.94
148837--148881	24	1.9	23	86	13	65	53	8	11	26	1.65
151094--151141	19	2.4	20	86	13	64	60	10	14	14	1.59
151531--151574	9	4.9	9	85	0	61	0	22	0	77	0.77
157499--157540	18	2.3	18	80	8	50	21	16	23	38	1.93
162742--162782	19	2.2	18	83	8	55	73	2	7	17	1.17
162978--163091	10	11.6	10	69	18	62	30	2	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162978--163049	17	3.8	18	78	15	74	30	1	1	66	1.08
162978--163091	9	11.7	9	73	15	61	30	2	0	65	1.12
166835--166868	15	2.2	16	89	5	52	38	2	2	55	1.30
173295--173455	71	2.3	71	93	0	277	26	26	19	27	1.99
189189--189222	17	2.0	17	88	0	50	52	11	17	17	1.73
193155--193192	11	3.1	12	85	14	51	13	15	0	71	1.16
199386--199412	7	3.9	7	100	0	54	59	0	29	11	1.32
213311--213353	21	1.9	24	86	13	65	60	0	37	2	1.10
225407--225448	17	2.5	16	82	17	50	16	14	19	50	1.79
227960--227992	17	1.9	17	93	0	57	78	0	18	3	0.87
229180--229209	15	2.0	15	93	0	51	33	6	10	50	1.62
229252--229279	11	2.5	11	100	0	56	50	7	0	42	1.30
232672--232779	56	1.9	56	92	3	182	29	15	6	48	1.70
235851--235908	29	2.0	30	83	10	75	34	3	8	53	1.49
237620--237660	3	13.7	3	89	0	55	60	2	31	4	1.30
237620--237687	18	3.9	18	79	11	72	54	5	29	10	1.58
261929--261988	25	2.4	25	82	0	66	21	1	6	70	1.20
263490--263529	19	2.1	19	100	0	80	35	25	25	15	1.94
281992--282070	40	2.0	40	92	0	131	27	13	27	30	1.95
283932--283996	33	2.0	33	81	0	76	13	29	4	52	1.61
284000--284034	16	2.2	16	95	5	63	22	20	0	57	1.41
289432--289485	25	2.1	26	83	10	67	27	3	12	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290528--290573	23	2.0	23	95	0	83	50	8	17	23	1.74
291381--291405	12	2.1	12	100	0	50	40	16	8	36	1.77
292857--292893	15	2.4	15	90	4	56	0	10	2	86	0.67
294161--294223	18	3.4	18	76	8	72	9	28	9	52	1.65
300179--300552	59	6.4	59	78	8	286	35	21	2	40	1.67
300179--300552	29	12.8	29	76	8	294	35	21	2	40	1.67
305988--306088	7	14.1	7	70	17	66	79	2	14	2	0.98
305988--306083	9	11.1	8	73	16	68	79	3	14	3	0.98
305992--306065	32	2.2	33	86	9	98	81	4	12	2	0.94
305988--306060	22	3.4	21	76	14	78	80	2	13	2	0.93
305988--306065	10	7.3	10	78	13	68	80	3	12	2	0.95
306524--306577	27	2.0	27	100	0	108	25	18	11	44	1.83
307052--307179	50	2.6	50	83	2	150	32	14	32	20	1.93
307102--307330	50	4.7	49	77	8	200	32	16	31	19	1.94
307102--307386	99	2.9	99	80	5	276	33	16	30	19	1.94
307663--307802	72	1.9	71	82	5	174	26	32	17	22	1.97
307776--307988	39	5.6	38	71	16	156	24	34	19	21	1.96
307731--308187	78	5.9	78	76	7	315	24	31	19	24	1.98
307624--307872	111	2.2	111	80	6	274	24	32	20	22	1.98
307782--307981	72	2.7	72	79	6	195	24	35	19	21	1.96
308059--308184	39	3.2	39	73	12	123	25	25	22	26	2.00
307863--308254	78	5.0	78	78	5	289	24	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307758--308206	156	2.9	156	78	5	389	24	31	19	24	1.98
308080--308246	39	4.3	39	72	6	97	25	30	16	28	1.96
309820--309887	32	2.1	32	100	0	136	25	17	11	45	1.82
312002--312054	27	2.0	27	88	0	79	18	9	22	49	1.76
342247--342295	22	2.3	21	86	13	66	69	0	8	22	1.14
342252--342304	22	2.3	23	87	6	90	69	0	9	20	1.15
343226--343284	29	2.0	29	86	0	82	16	16	22	44	1.87
357511--357538	2	14.0	2	100	0	56	0	50	0	50	1.00
361691--362149	151	3.0	149	88	7	658	32	16	16	33	1.92
382726--382776	21	2.4	21	75	18	52	9	11	33	45	1.74

Tables:   1   2