Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013357.1 Kokia drynarioides strain JFW-HI SEQ_128380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4501
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Found at i:595 original size:29 final size:29

Alignment explanation


    Indices: 553--620  Score: 82
    Period size: 29  Copynumber: 2.3  Consensus size: 29

        543 CACGAGGTAG

                 *   *      *            
        553 ACACATGGGAGTGTGATAGGCCGTGTGTC
          1 ACACACGGGCGTGTGAAAGGCCGTGTGTC

                              *   *      
        582 ACACACGGGCGTGTGAAATGCCTTGTGTC
          1 ACACACGGGCGTGTGAAAGGCCGTGTGTC

               *      
        611 ACAAACGGGC
          1 ACACACGGGC

        621 TAGCACATGA


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  29   33  1.00

ACGTcount: A:0.24, C:0.22, G:0.34, T:0.21


Consensus pattern (29 bp):   
ACACACGGGCGTGTGAAAGGCCGTGTGTC
Done.