Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013358.1 Kokia drynarioides strain JFW-HI SEQ_128381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6979
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31


Found at i:6033 original size:34 final size:34

Alignment explanation


    Indices: 5990--6057  Score: 118
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       5980 AGGTAAAGGA

                                              
       5990 ATTAAGAAATAAACGAGTTTCCCTAGCAAAAGTC
          1 ATTAAGAAATAAACGAGTTTCCCTAGCAAAAGTC

                         *            *       
       6024 ATTAAGAAATAAATGAGTTTCCCTAGTAAAAGTC
          1 ATTAAGAAATAAACGAGTTTCCCTAGCAAAAGTC

       6058 TTATGGAGAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26


Consensus pattern (34 bp):   
ATTAAGAAATAAACGAGTTTCCCTAGCAAAAGTC
Done.