Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013359.1 Kokia drynarioides strain JFW-HI SEQ_128382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7282
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:5279 original size:38 final size:38

Alignment explanation


    Indices: 5237--5316  Score: 90
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       5227 GTCTATTCAG

                     * *    *                 *    
       5237 AATTGCGCATAGAATTGTCACTGCATGATG-ATGTCCAA
          1 AATTGCGCACAAAATTATCACTGCATGA-GCATGCCCAA

                 *  *                             
       5275 AATTGTGCCCAAAATTATCACTGCATGAGCATGCCCAA
          1 AATTGCGCACAAAATTATCACTGCATGAGCATGCCCAA

                
       5313 AATT
          1 AATT

       5317 TTTGTTGCAC


Statistics
Matches: 35,  Mismatches: 6, Indels: 2
        0.81            0.14        0.05

Matches are distributed among these distances:
  37    1  0.03
  38   34  0.97

ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28


Consensus pattern (38 bp):   
AATTGCGCACAAAATTATCACTGCATGAGCATGCCCAA
Done.